These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6737#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1448 fasta sequence [GCAAGGCCGAGCTGAGCTGAGCTGAGCTGCAGCGAGTGACAGCTCCACAGAAAAGCAAAGCAAGCAAGCTACCTCTCTCTCTCTCTCTCTCTCTCTCGGTAGCTTCTCTCTCTTGCTGGCTGGCTCTCTGCGCGTGGTGTGTACTCCTGCTGTCCCTGCTGCGGCTACAGCTACTGTTGCAGCTCGAGCACCCAGAAGGCCAGAAACCCAGAACAAGTCTCACACCCTCCTCCTCCTCTCGTCCATACTAGCACCACCGCTGCTGCTGTTGCTCCTGCTGCTGTGCTGCCGCCGCCTGCTCGTCCAAGAATCTTCCAGCTTTCCCCAATACTGAGCAGCCAACTCCTGCTACCGCTTCTTGATCTGTGGGATTTTCTTCTTGTTTCGAATCCAAGATCACTTCCAATCCATAGTTTTGGCTTTTGGCTTCCCTCCAGCATCAGTGAAAATTGGTTCTTTGGAGGGGAAGAAATGGATAGCGGCTGGATATGCTTCTTGAGCCAGATTGCTGATTTGATGCAATAAGATTTCTATCTTATTTCTTGCTGCAGTATCACAAATCAAACTAGGAGAACTGACTGAGAAGTGAAATATTCTGCTTCCAAGAATCAATCAGATAAACTGATTCCAAGAAAATAACAAGAAGTAATCAGATAACAGAAGCAGCTGCAGCTGCAGCAGTAGCATCTTTCTGTTCCCAGTAATTGCCCAATCCAACTCCAGCTAGATTTAATCAGATAGAGAAGTAATCTGCTGGATTGAAATCCATGGGTAGGGGAAGAGGCAGAGGGAGGAAGCTCACCAATGGCAGGAGCCATGAGGACAAGGGCAGCAGCGGCGAGGAGGTTGTGCCTGCGAGGAAGAGGAGGGGAAGGCCGCAGAAGCGCATTGTCGACAAGGTGGTGGATCAAGCAGAGGCCAAGAATCTAACCGAGGGCGACGACGGTGATGCTGACTACCAACAAGGCGAAGGAGAAGACGGCGGTGCGAAGCCGAAGGTGTCAAGAACGGAGAAGAGCTCTGCAGGGAAGGGCAACAAGAGGAACAGGCTGCCCAAGGAGGAAGAAAGCTCAAACCTTGACCTTGAGGAGAACAGCTCAAGCACCCGGTCCAGCAACGATGAATCCACCAGGTCCAATGGCTTCCGGCAGAATGGCAGCCGGCGTAAGAGCACGCCGCGGCGAGCCGCGGAGGCGGGGATATAGCTTGGAAACTTTGGAATAGGGTGGGGAGGACAGTTTCATCAGGGATTGGTTCTTGGGTTATATCATCAGTTAGGCAAGCTGCTCTTCAGTTTTGTCATCTTCAGATTCGGCAAGTTTTCCTTCAAAATTTTGTCATGTTCATGTTTGCTAGGCACCAACATGAATGTAATGTAAACATATACTAATCCGCGAGACATCGGAGTTT-TGCTTCTGGTGATGAAAATTGTATGAACTAGCATCGGC] [+] EMBL AK058736 [GCAAGGCCGAGCTGAGCTGAGCTGAGCTGCAGCGAGTGACAGCTCCACAGAAAAGCAAAGCAAGCAAGCTACCTCTCTCTCTCTCTCTCTCTCTCTCGGTAGCTTCTCTCTCTTGCTGGCTGGCTCTCTGCGCGTGGTGTGTACTCCTGCTGTCCCTGCTGCGGCTACAGCTACTGTTGCAGCTCGAGCACCCAGAAGGCCAGAAACCCAGAACAAGTCTCACACCCTCCTCCTCCTCTCGTCCATACTAGCACCACCGCTGCTGCTGTTGCTCCTGCTGCTGTGCTGCCGCCGCCTGCTCGTCCAAGAATCTTCCAGCTTTCCCCAATACTGAGCAGCCAACTCCTGCTACCGCTTCTTGATCTGTGGGATTTTCTTCTTGTTTCGAATCCAAGATCACTTCCAATCCATAGTTTTGGCTTTTGGCTTCCCTCCAGCATCAGTGAAAATTGGTTCTTTGGAGGGGAAGAAATGGATAGCGGCTGGATATGCTTCTTGAGCCAGATTGCTGATTTGATGCAATAAGATTTCTATCTTATTTCTTGCTGCAGTATCACAAATCAAACTAGGAGAACTGACTGAGAAGTGAAATATTCTGCTTCCAAGAATCAATCAGATAAACTGATTCCAAGAAAATAACAAGAAGTAATCAGATAACAGAAGCAGCTGCAGCTGCAGCAGTAGCATCTTTCTGTTCCCAGTAATTGCCCAATCCAACTCCAGCTAGATTTAATCAGATAGAGAAGTAATCTGCTGGATTGAAATCCATGGGTAGGGGAAGAGGCAGAGGGAGGAAGCTCACCAATGGCAGGAGCCATGAGGACAAGGGCAGCAGCGGCGAGGAGGTTGTGCCTGCGAGGAAGAGGAGGGGAAGGCCGCAGAAGCGCATTGTCGACAAGGTGGTGGATCAAGCAGAGGCCAAGAATCTAACCGAGGGCGACGACGGTGATGCTGACTACCAACAAGGCGAAGGAGAAGACGGCGGTGCGAAGCCGAAGGTGTCAAGAACGGAGAAGAGCTCTGCAGGGAAGGGCAACAAGAGGAACAGGCTGCCCAAGGAGGAAGAAAGCTCAAACCTTGACCTTGAGGAGAACAGCTCAAGCACCCGGTCCAGCAACGATGAATCCACCAGGTCCAATGGCTTCCGGCAGAATGGCAGCCGGCGTAAGAGCACGCCGCGGCGAGCCGCGGAGGCGGGGATATAGCTTGGAAACTTTGGAATAGGGTGGGGAGGACAGTTTCATCAGGGATTGGTTCTTGGGTTATATCATCAGTTAGGCAAGCTGCTCTTCAGTTTTGTCATCTTCAGATTCGGCAAGTTTTCCTTCAAAATTTTGTCATGTTCATGTTTGCTAGGCACCAACATGAATGTAATGTAAACATATACTAATCCGCGAGACATCGGAGTTT TGCTTCTGGTGATGAAAATTGTATGAACTAGCATC ] [+] EMBL AK071655 [ TCTCTTGCTGGCTGGCTCTCTGCGCGTGGTGTGTACTCCTGCTGTCCCTGCTGCGGCTACAGCTACTGTTGCAGCTCGGGCACCCAGAAGGCCAGAAACCCAGAACAAGTCTCACACCCTCCTCCTCCTCTCGTCCATACTAGCACCACCGCTGCTGCTGTTGCTCCTGCTGCTGTGCTGCCGCCGCCTGCTCGTCCAAGAATCTTCCAGCTTTCCCCAATACTGAGCAGCCAACTCCTGCTACCGCTTCTTGATCTGTGGGATTTTCTTCTTGTTTCGAATCCAAGATCACTTCCAATCCATAGTTTTGGCTTTTGGCTTCCCTCCAGCATCAGTGAAAATTGGTTCTTTGGAGGGGAAGAAATGGATAGCGGCTGGATATGCTTCTTGAGCCAGATTGCTGATTTGATGCAATAAGATTTCTATCTTATTTCTTGCTGCAGTATCACAAATCAAACTAGGAGAACTGACTGAGAAGTGAAATATTCTGCTTCCAAGAATCAATCAGATAAACTGATTCCAAGAAAATAACAAGAAGTAATCAGATAACAGAAGCAGCTGCAGCTGCAGCAGTAGCATCTTTCTGTTCCCAGTAATTGCCCAATCCAACTCCAGCTAGATTTAATCAGATAGAGAAGTAATCTGCTGGATTGAAATCCATGGGTAGGGGAAGAGGCAGAGGGAGGAAGCTCACCAATGGCAGGAGCCATGAGGACAAGGGCAGCAGCGGCGAGGAGGTTGTGCCTGCGAGGAAGAGGAGGGGAAGGCCGCAGAAGCGCATTGTCGACAAGGTGGTGGATCAAGCAGAGGCCAAGAATCTAACCGAGGGCGACGACGGTGATGCTGACTACCAACAAGGCGAAGGAGAAGACGGCGGTGCGAAGCCGAAGGTGTCAAGAACGGAGAAGAGCTCTGCAGGGAAGGGCAACAAGAGGAACAGGCTGCCCAAGGAGGAAGAAAGCTCAAACCTTGACCTTGAGGAGAACAGCTCAAGCACCCGGTCCAGCAACGATGAATCCACCAGGTCCAATGGCTTCCGGCAGAATGGCAGCCGGCGTAAGAGCACGCCGCGGCGAGCCGCGGAGGCGGGGATATAGCTTGGAAACTTTGGAATAGGGTGGGGAGGACAGTTTCATCAGGGATTGGTTCTTGGGTTATATCATCAGTTAGGCAAGCTGCTCTTCAGTTTTGTCATCTTCAGATTCGGCAAGTTTTCCTTCAAAATTTTGTCATGTTCATGTTTGCTAGGCACCAACATGAATGTAATGTAAACATATACTAATCCGCGAGACATCGGAGTTT TGCTTCTGGTGATGAAAATTGTATGAACTAGCATCGGC] [-] EMBL CB653297 [ CAGCTGCAGCAGTAGCATCTTTGTGTTCCCAGTAATTGCCCAATCCAACTCCAGCTAGATTTAATCAGATAGAGAAGTAATCTGCTGGATTGAAATCCATGGGTAGGGGAAGAGGCAGAGGGAGGAAGCTCACCAATGGCAGGAGCCATGAGGACAAGGGCAGCAGCGGCGAGGAGGTTGTGCCTGCGAGGAAGAGGAGGGGAAGGCCGCAGAAGCGCATTGTCGACAAGGTGGTGGATCAAGCAGAGGCCAAGAATCTAACCGAGGGCGACGACGGTGATGCTGACTACCAACAAGGCGAAGGAGAAGACGGCGGTGCGAAGCTGAAGGTGTCAAGAACGGAGAAGAGCTCTGCAGGGAAGGGCAACAAGAGGAACAGGCTGCCCAAGGAGGAAGAAAGCTCAAACCTTGTCCTTGAGGAGAACAGCTCAAGCACCCGGTCCAGCAACGATGAATCCACCAGGTCCAATGGCTTCCGGCAGAATGGCAGCCGGCGTAAGAGCACGCCGCGGCGAGCCGCGGAGGCGGGGATATAGCTTGGAAACTTTGGAATAGGGTGGGGAGGACAGTTTCATCAGGGATTGGTTCTTGGGTTATATCATCAGTTAGGCAAGCTGCTCTTCAGTTTTGTCATCTTCAGATTCGGCAAGTTTTCCTTCAAAATTTTGTCATGTTCATGTTTGCTAGGCACCAACATGAATGTAATGTAAACATATACTAATCCGCGAGACATCGGAGTTTGTGCTTCTG ] consensusID : consensus_6737#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 548 fasta sequence [AGAGGACGAGACAAGGGGAAGGAGAAGANGGCGGTGCGAAGCCGAAGGTGTCAAGAACGGAGAAGAGCTCTGCAGGGAAGGGCAACAAGAGGAACAGGCTGCCCAAGGAGGAAGAAAGCTCAAACCTTGACCTTGAGGAGAACAGCTCAAGCACCCGGTCCAGCAACGATGAATCCACCAGGTCCAATGGCTTCCGGCAGAATGGCAGCCGGCGTAAGAGCACCCCGCGGCGAGCCGCGGAGGCGGGGATAGCTTGGAAACTTTGGAATAGGGTGGGGAGGACAGTTTCATCAGGGATTGGTTCTTGGGTTATATCATCAGTTAGGCAAGCTGCTCTTCAGTTTTGTCATCTTCAGATTCGGCAAGTTTTCCTTCAAAATTTTGTCATGTTCATGTTTGCTAGGCACCAACATGAATGTAATGTAAACATATACTAATCCGCGAGACATCGGAGTTTTGCTTCTGGTGATGAAAATTGTATGAACTAGCATCGGCTTATGGTACTACTATAGCTAGCATCACCAATCTTGTTGCAAAAAAAAAAAAAA] [-] EMBL CA763657 [AGAGGACGAGACAAGGGGAAGGAGAAGANGGCGGTGCGAAGCCGAAGGTGTCAAGAACGGAGAAGAGCTCTGCAGGGAAGGGCAACAAGAGGAACAGGCTGCCCAAGGAGGAAGAAAGCTCAAACCTTGACCTTGAGGAGAACAGCTCAAGCACCCGGTCCAGCAACGATGAATCCACCAGGTCCAATGGCTTCCGGCAGAATGGCAGCCGGCGTAAGAGCACCCCGCGGCGAGCCGCGGAGGCGGGGATAGCTTGGAAACTTTGGAATAGGGTGGGGAGGACAGTTTCATCAGGGATTGGTTCTTGGGTTATATCATCAGTTAGGCAAGCTGCTCTTCAGTTTTGTCATCTTCAGATTCGGCAAGTTTTCCTTCAAAATTTTGTCATGTTCATGTTTGCTAGGCACCAACATGAATGTAATGTAAACATATACTAATCCGCGAGACATCGGAGTTTTGCTTCTGGTGATGAAAATTGTATGAACTAGCATCGGCTTATGGTACTACTATAGCTAGCATCACCAATCTTGTTGCAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6737#0 GCAAGGCCGAGCTGAGCTGAGCTGAGCTGCAGCGAGTGACAGCTCCACAGAAAAGCAAAG 60 consensus_6737#1 ------------------------------------------------------------ consensus_6737#0 CAAGCAAGCTACCTCTCTCTCTCTCTCTCTCTCTCTCGGTAGCTTCTCTCTCTTGCTGGC 120 consensus_6737#1 ------------------------------------------------------------ consensus_6737#0 TGGCTCTCTGCGCGTGGTGTGTACTCCTGCTGTCCCTGCTGCGGCTACAGCTACTGTTGC 180 consensus_6737#1 ------------------------------------------------------------ consensus_6737#0 AGCTCGAGCACCCAGAAGGCCAGAAACCCAGAACAAGTCTCACACCCTCCTCCTCCTCTC 240 consensus_6737#1 ------------------------------------------------------------ consensus_6737#0 GTCCATACTAGCACCACCGCTGCTGCTGTTGCTCCTGCTGCTGTGCTGCCGCCGCCTGCT 300 consensus_6737#1 ------------------------------------------------------------ consensus_6737#0 CGTCCAAGAATCTTCCAGCTTTCCCCAATACTGAGCAGCCAACTCCTGCTACCGCTTCTT 360 consensus_6737#1 ------------------------------------------------------------ consensus_6737#0 GATCTGTGGGATTTTCTTCTTGTTTCGAATCCAAGATCACTTCCAATCCATAGTTTTGGC 420 consensus_6737#1 ------------------------------------------------------------ consensus_6737#0 TTTTGGCTTCCCTCCAGCATCAGTGAAAATTGGTTCTTTGGAGGGGAAGAAATGGATAGC 480 consensus_6737#1 ------------------------------------------------------------ consensus_6737#0 GGCTGGATATGCTTCTTGAGCCAGATTGCTGATTTGATGCAATAAGATTTCTATCTTATT 540 consensus_6737#1 ------------------------------------------------------------ consensus_6737#0 TCTTGCTGCAGTATCACAAATCAAACTAGGAGAACTGACTGAGAAGTGAAATATTCTGCT 600 consensus_6737#1 ------------------------------------------------------------ consensus_6737#0 TCCAAGAATCAATCAGATAAACTGATTCCAAGAAAATAACAAGAAGTAATCAGATAACAG 660 consensus_6737#1 ------------------------------------------------------------ consensus_6737#0 AAGCAGCTGCAGCTGCAGCAGTAGCATCTTTCTGTTCCCAGTAATTGCCCAATCCAACTC 720 consensus_6737#1 ------------------------------------------------------------ consensus_6737#0 CAGCTAGATTTAATCAGATAGAGAAGTAATCTGCTGGATTGAAATCCATGGGTAGGGGAA 780 consensus_6737#1 ------------------------------------------------------------ consensus_6737#0 GAGGCAGAGGGAGGAAGCTCACCAATGGCAGGAGCCATGAGGACAAGGGCAGCAGCGGCG 840 consensus_6737#1 ------------------------------------------------------------ consensus_6737#0 AGGAGGTTGTGCCTGCGAGGAAGAGGAGGGGAAGGCCGCAGAAGCGCATTGTCGACAAGG 900 consensus_6737#1 ------------------------------------------------------------ consensus_6737#0 TGGTGGATCAAGCAGAGGCCAAGAATCTAACCGAGGGCGACGACGGTGATGCTGACTACC 960 consensus_6737#1 -------------------------------------------------AGAGGACGA-- 9 * *** * consensus_6737#0 AACAAGGCGAAGGAGAAGACGGCGGTGCGAAGCCGAAGGTGTCAAGAACGGAGAAGAGCT 1020 consensus_6737#1 GACAAGGGGAAGGAGAAGANGGCGGTGCGAAGCCGAAGGTGTCAAGAACGGAGAAGAGCT 69 ****** *********** **************************************** consensus_6737#0 CTGCAGGGAAGGGCAACAAGAGGAACAGGCTGCCCAAGGAGGAAGAAAGCTCAAACCTTG 1080 consensus_6737#1 CTGCAGGGAAGGGCAACAAGAGGAACAGGCTGCCCAAGGAGGAAGAAAGCTCAAACCTTG 129 ************************************************************ consensus_6737#0 ACCTTGAGGAGAACAGCTCAAGCACCCGGTCCAGCAACGATGAATCCACCAGGTCCAATG 1140 consensus_6737#1 ACCTTGAGGAGAACAGCTCAAGCACCCGGTCCAGCAACGATGAATCCACCAGGTCCAATG 189 ************************************************************ consensus_6737#0 GCTTCCGGCAGAATGGCAGCCGGCGTAAGAGCACGCCGCGGCGAGCCGCGGAGGCGGGGA 1200 consensus_6737#1 GCTTCCGGCAGAATGGCAGCCGGCGTAAGAGCACCCCGCGGCGAGCCGCGGAGGCGGGGA 249 ********************************** ************************* consensus_6737#0 TATAGCTTGGAAACTTTGGAATAGGGTGGGGAGGACAGTTTCATCAGGGATTGGTTCTTG 1260 consensus_6737#1 T--AGCTTGGAAACTTTGGAATAGGGTGGGGAGGACAGTTTCATCAGGGATTGGTTCTTG 307 * ********************************************************* consensus_6737#0 GGTTATATCATCAGTTAGGCAAGCTGCTCTTCAGTTTTGTCATCTTCAGATTCGGCAAGT 1320 consensus_6737#1 GGTTATATCATCAGTTAGGCAAGCTGCTCTTCAGTTTTGTCATCTTCAGATTCGGCAAGT 367 ************************************************************ consensus_6737#0 TTTCCTTCAAAATTTTGTCATGTTCATGTTTGCTAGGCACCAACATGAATGTAATGTAAA 1380 consensus_6737#1 TTTCCTTCAAAATTTTGTCATGTTCATGTTTGCTAGGCACCAACATGAATGTAATGTAAA 427 ************************************************************ consensus_6737#0 CATATACTAATCCGCGAGACATCGGAGTTTTGCTTCTGGTGATGAAAATTGTATGAACTA 1440 consensus_6737#1 CATATACTAATCCGCGAGACATCGGAGTTTTGCTTCTGGTGATGAAAATTGTATGAACTA 487 ************************************************************ consensus_6737#0 GCATCGGC---------------------------------------------------- 1448 consensus_6737#1 GCATCGGCTTATGGTACTACTATAGCTAGCATCACCAATCTTGTTGCAAAAAAAAAAAAA 547 ******** consensus_6737#0 - consensus_6737#1 A 548 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||