These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6810#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 751 fasta sequence [TTTTTTTTTTCCACCAAAAGCCACATACAGCTGAAATAACAT-GGTCATGACATAAATGTTGAAATCAGCACATACA-GTGCATCAT-CTCTCATCACAGATTTGCATACAA-CCCCAAAATGCATCACTACCATTAAGTGCCACATACAGTACCATCACATATGCATGTCTTGCAGTGCCATAGAAGTGCCATCTCACCACATAAAGTACCATCACCATATACATGACTAAAATACATCAG-ACCATAGTACCAAAACGCTAGATTAACTGGAGTACTACATAAGTACCGTGCAACCAGAGATCACAGTACCAAAATATGTGAGCACATGTTAATTAAAAAGGATCCCTAATTAAAATTTAGAGATTTC-TTTTGCTCCTTGTACTCATGGCTGGACTATCAGGAGACACAGGAATGAAGTTGCC-TTTTG-TTGACTTGTGCCAAAGGCGTAGTAGCAGCGCTATCCTTTGTATTCTTCCTAGGAGCTATCTTGGCTTTAG-CTTGGTCTTTGTCTTACGCCTTGGCCTTAAAGAGTTCTCTCCAGGCGCTGTAAGTGGCATCAACACACTCAAAGGTTCAGGTTGGTTGGATCCTGTCACTGACCTTGATCTAACTGACCCTGATGAAGTATTACTGAGGTCCTGTCCTTTTTTCCCGGTTTGACAACTTTTGCTTGGTGGATATGTCATTGTTGCAGACAATATTGCATTTTGAGCAGAAGATGCACTAGGAACATGTACAATGCTAGTTTCAGCA] [-] EMBL BI812596 [TTTTTTTTTTCCACCAAAAGCCACATACAGCTGAAATAACAT GGTCATGACATAAATGTTGAAATCAGCACATACA GTGCATCAT CTCTCATCACAGATTTGCATACAA CCCCAAAATGCATCACTACCATTAAGTGCCACATACAGTACCATCACATATGCATGTCTTGCAGTGCCATAGAAGTG ] [-] EMBL BI812246 [ tttttttttTACAGCTGAAATAACATGGGTCATGACATAAATGTTGAAATCAGCACATACA GTGCATCAT CTCTCATCACAGA TTGCATACAAGCCCCAAAATGCATCACTACCATTAAGTGCCACATACAGTACCATCACATATGCATGTCTGGCAGTGCCATAGAAGTGCCATCTCACCACATAAAGTACCATCACCATATACATGACTAAAATACATCAG ACCATAGTACCAAAACGCTAGATTAACTGGAGTACTACATAAGTACCGTGCAACCAGAGATCACAGTACCAAAATATGTGAGCACATGTTAATTAAAAAGGATCCCTAATTAAAATTTAGAGATTTC TTTTGCTCCTTGTACTCATGGCTGGACTATCAGGAGACACAGGAATGAAGTTGCC TTTTG TTGACTTGTGCCAAAGGCGTAGTAGCAGCGCTATCCTTTGTATTCTTCCTAGGAGCTATCTTGGCTTTAG CTTGGTCTTTGTCTTACGCCTTGGCCTTAAAGAGTTCTCTCCAGGCGCTGTA ] [+] EMBL CB642571 [ GGACATGACATAAATGTTGCCATCAAAACATACAGGTGCATCATGCTCTCATCACAGATTTGCATACAA CCCCAAAATGCATCACTATCATTAAGTGCCACATACAGTACCATCACATATGCATGTCTTGCAGTGCCATAGAAGTGCCATCTCACCACATACAGTACCATCACCATATACATGACTAAAATGCATCAGCACCATAGTACCAAAACGCTAGATTAACTGGAGTACTACATAAGTACCGTGCAACCAGAGATCACAGTACCAAAATATGTGAGCACATGTTAATTAAAAAGGATCCCTAATTAAAATTTAGAGATTTCTTTTTGCTCCTTGTACTCATGGCTGGACTATCAGGAGACACAGGAATGAAGTTGCCTTTTTGTTTGACTTGTGCCAAAGGCGTAGTAGCAGCGCTATCCTTTGTATTCTTCCTAGGAGCTATCTTGGCTTTAGTTTTGGTC TGTCTTA GCCTTGGCCTT AGAGTTCTCTCCAGGCGCTGCTAGTGGCATCAACACACTCAAAGGTTCAGGTTGGTTGGATCCTGTCACTGACCTTGATCTAACTGACCCTGATGAAGTATTACTGAGGTCCTGTCCTTTTTTCCCGGTTTGACAACTTTTGCTTGGTGGATATGTCATTGTTGCAGACAATATTGCATTTTGAGCAGAAGATGCACTAGGAACATGTACAATGCTAGTTTCAGCA] consensusID : consensus_6810#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 418 fasta sequence [TACAGTGAAATAACAGGGTCATGACCATAAAGTGTTGAAATCAGCACATACAGGGGCATCATCTCTCATCACAGATTGGGATACAACCCCAAAAGGGATCACTACCATTAAGGTGNCACATACAGTACCATCACAGTAGTGGCAGTGTCTTGGCAGGGCCATAGAAGTGCCATCTCACCACATAAAGTACCATCACCATATACAGTGACTAAAATACATCAGCACCATAGTACCAAAACGCTAGATTAACGTGGAGTACTACATAAGTACCGGGCAACCAGAGATCACAGTACCAAAATATGTGAGCACAGTGTTAATTAACAAGAGGATCCCTAATTCAACACATTTAGAGATTTCTTTTGGNTCCTGTGGTACTCAGGGGTGGCACTATCAGGCAGCACCACAGGAATGAAGCGGC] [-] EMBL BM420293 [TACAGTGAAATAACAGGGTCATGACCATAAAGTGTTGAAATCAGCACATACAGGGGCATCATCTCTCATCACAGATTGGGATACAACCCCAAAAGGGATCACTACCATTAAGGTGNCACATACAGTACCATCACAGTAGTGGCAGTGTCTTGGCAGGGCCATAGAAGTGCCATCTCACCACATAAAGTACCATCACCATATACAGTGACTAAAATACATCAGCACCATAGTACCAAAACGCTAGATTAACGTGGAGTACTACATAAGTACCGGGCAACCAGAGATCACAGTACCAAAATATGTGAGCACAGTGTTAATTAACAAGAGGATCCCTAATTCAACACATTTAGAGATTTCTTTTGGNTCCTGTGGTACTCAGGGGTGGCACTATCAGGCAGCACCACAGGAATGAAGCGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6810#0 TTTTTTTTTTCCACCAAAAGCCACATACAGCTGAAATAACATGGTCATGAC-ATAAA-TG 58 consensus_6810#1 -------------------------TACAG-TGAAATAACAGGGTCATGACCATAAAGTG 34 ***** ********** ********* ***** ** consensus_6810#0 TTGAAATCAGCACATACAGTG-CATCATCTCTCATCACAGATTTGCATACAACCCCAAAA 117 consensus_6810#1 TTGAAATCAGCACATACAGGGGCATCATCTCTCATCACAGATTGGGATACAACCCCAAAA 94 ******************* * ********************* * ************** consensus_6810#0 TGCATCACTACCATTAAG-TGCCACATACAGTACCATCACATATGCA----TGTCTTG-C 171 consensus_6810#1 GGGATCACTACCATTAAGGTGNCACATACAGTACCATCACAGTAGTGGCAGTGTCTTGGC 154 * *************** ** ******************* * ******* * consensus_6810#0 AGTGCCATAGAAGTGCCATCTCACCACATAAAGTACCATCACCATATACA-TGACTAAAA 230 consensus_6810#1 AGGGCCATAGAAGTGCCATCTCACCACATAAAGTACCATCACCATATACAGTGACTAAAA 214 ** *********************************************** ********* consensus_6810#0 TACATCAG-ACCATAGTACCAAAACGCTAGATTAAC-TGGAGTACTACATAAGTACCGTG 288 consensus_6810#1 TACATCAGCACCATAGTACCAAAACGCTAGATTAACGTGGAGTACTACATAAGTACCGGG 274 ******** *************************** ********************* * consensus_6810#0 CAACCAGAGATCACAGTACCAAAATATGTGAGCACA-TGTTAATTAA--AAAGGATCCCT 345 consensus_6810#1 CAACCAGAGATCACAGTACCAAAATATGTGAGCACAGTGTTAATTAACAAGAGGATCCCT 334 ************************************ ********** * ********* consensus_6810#0 AATTAAA---ATTTAGAGATTTCTTTTGCTCCTTGT---ACTCATGGCTGG-ACTATCAG 398 consensus_6810#1 AATTCAACACATTTAGAGATTTCTTTTGGNTCCTGTGGTACTCAGGGGTGGCACTATCAG 394 **** ** ****************** * *** ***** ** *** ******** consensus_6810#0 GAGACAC---AGGAATGAAGTTGCCTTTTGTTGACTTGTGCCAAAGGCGTAGTAGCAGCG 455 consensus_6810#1 GCAGCACCACAGGAATGAAGCGGC------------------------------------ 418 * *** ********** ** consensus_6810#0 CTATCCTTTGTATTCTTCCTAGGAGCTATCTTGGCTTTAGCTTGGTCTTTGTCTTACGCC 515 consensus_6810#1 ------------------------------------------------------------ consensus_6810#0 TTGGCCTTAAAGAGTTCTCTCCAGGCGCTGTAAGTGGCATCAACACACTCAAAGGTTCAG 575 consensus_6810#1 ------------------------------------------------------------ consensus_6810#0 GTTGGTTGGATCCTGTCACTGACCTTGATCTAACTGACCCTGATGAAGTATTACTGAGGT 635 consensus_6810#1 ------------------------------------------------------------ consensus_6810#0 CCTGTCCTTTTTTCCCGGTTTGACAACTTTTGCTTGGTGGATATGTCATTGTTGCAGACA 695 consensus_6810#1 ------------------------------------------------------------ consensus_6810#0 ATATTGCATTTTGAGCAGAAGATGCACTAGGAACATGTACAATGCTAGTTTCAGCA 751 consensus_6810#1 -------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||