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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6827#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1291 fasta sequence
[ACTCTTCGACCTCCACGCCGACGTCGCGCTGCGCCTGCCACCTTTATCTTGAACCGCGACGTCGTTGTCCGCCCCTCCCGCGCCGGCGAGGCGACCGAGCCCCCTCCCCTCCTTCCCTGCCTCGTGCCACTAGCGCCGCCCTTCGCCGCCGCCGCCGCCGCCGCCCGCGAGGGAGACGCGAGAAGGATGAGGGTGAAGAGGCGGTCCAAGAACCGCAAGGTGGTCAGGTTCTACGCCACCTGCTTCGGCTTCCGCGAGCCCTACAGGGTGCTCGTCGACGGCACCTTCGTCCACCACCTCCTCAGTCACAGCCTCCTCCCCGCCGACGACGCCCTCCAGTCCCTCCTCTCCGCCTCCAGGCCCCCTCCCCTCTTCACCTCCAAGTGCGTCCTCGCCGAGCTCAGGCGCCTCGGCAAGTCCCACGCCGACGCCTTCGACGCCGCCGCCCTGCTCGCCACGGCCAAGTGTGAGCATGACAAAGTAGTCAGTGCAGTGGATTGTGTTCTGTCACTGATAGGTGAAAAGAATCCCGAACACTTCTTTGTTGCCACCCAGGATTCTGATCTCCGTGCAAAGCTACGGGAGGTTCCTGGTGTTCCTGTGATATATGGTCTGAAGAGCTCCTTGTTCATTGAACAACCCTCTGTGCAGCAACGTAAATTTGCTCAGTTGGACGAGGAGAAGCGTCTGCATATGGGTAAATCAGAATATCAGAAGCTACTGAAGGTTCCATCGGATGGAAAGGCGGCTGCCAGTGAAAACGCAAGTGATGATGAAAAGAACAGAAGGCCTATCAGTTCTCTTGTAGAAAATGCACTTGGGGTGGCCGACAAAAGCAAATTTAAGAAGAAAAGACCAAAGGGACCAAACCCACTCTCCTGTAAGAAAAAGAAACCAAAGCCCCAATTGTCAGCTGCTCAAAATCAGGGGCCCAAAGCTGATGGGGAGGCAAAGCGAAAGAGAGTTAGGAAGCGGAAGAGAAGCCACAAAGATAGCAAGCAAACGGAAACAATGAGCTAAGAAAGATGAGCTGCAAAGTTAAGAAACTCTCGCTGCATATCCAGAGGCAGAGCTAGGTGGCACAATGTTTTGAAGATAGAAATCATACTGATCTCATGGTGTGCCACTCATTGAGTCGGCTGCGTTCTTTGAATTGTAATGCTTGATTGTTCACAGATATTTATGATAGATCCGTATAGGATGTATCTGGATGTCTTCTTGTAGCAGTTGATGCAACACTGTCTATCAAATGGAATTCATGGTGCTACTGCTAATCTGATAGAATTTCCAA]
[+] EMBL AK103767 [ACTCTTCGACCTCCACGCCGACGTCGCGCTGCGCCTGCCACCTTTATCTTGAACCGCGACGTCGTTGTCCGCCCCTCCCGCGCCGGCGAGGCGACCGAGCCCCCTCCCCTCCTTCCCTGCCTCGTGCCACTAGCGCCGCCCTTCGCCGCCGCCGCCGCCGCCGCCCGCGAGGGAGACGCGAGAAGGATGAGGGTGAAGAGGCGGTCCAAGAACCGCAAGGTGGTCAGGTTCTACGCCACCTGCTTCGGCTTCCGCGAGCCCTACAGGGTGCTCGTCGACGGCACCTTCGTCCACCACCTCCTCAGTCACAGCCTCCTCCCCGCCGACGACGCCCTCCAGTCCCTCCTCTCCGCCTCCAGGCCCCCTCCCCTCTTCACCTCCAAGTGCGTCCTCGCCGAGCTCAGGCGCCTCGGCAAGTCCCACGCCGACGCCTTCGACGCCGCCGCCCTGCTCGCCACGGCCAAGTGTGAGCATGACAAAGTAGTCAGTGCAGTGGATTGTGTTCTGTCACTGATAGGTGAAAAGAATCCCGAACACTTCTTTGTTGCCACCCAGGATTCTGATCTCCGTGCAAAGCTACGGGAGGTTCCTGGTGTTCCTGTGATATATGGTCTGAAGAGCTCCTTGTTCATTGAACAACCCTCTGTGCAGCAACGTAAATTTGCTCAGTTGGACGAGGAGAAGCGTCTGCATATGGGTAAATCAGAATATCAGAAGCTACTGAAGGTTCCATCGGATGGAAAGGCGGCTGCCAGTGAAAACGCAAGTGATGATGAAAAGAACAGAAGGCCTATCAGTTCTCTTGTAGAAAATGCACTTGGGGTGGCCGACAAAAGCAAATTTAAGAAGAAAAGACCAAAGGGACCAAACCCACTCTCCTGTAAGAAAAAGAAACCAAAGCCCCAATTGTCAGCTGCTCAAAATCAGGGGCCCAAAGCTGATGGGGAGGCAAAGCGAAAGAGAGTTAGGAAGCGGAAGAGAAGCCACAAAGATAGCAAGCAAACGGAAACAATGAGCTAAGAAAGATGAGCTGCAAAGTTAAGAAACTCTCGCTGCATATCCAGAGGCAGAGCTAGGTGGCACAATGTTTTGAAGATAGAAATCATACTGATCTCATGGTGTGCCACTCATTGAGTCGGCTGCGTTCTTTGAATTGTAATGCTTGATTGTTCACAGATATTTATGATAGATCCGTATAGGATGTATCTGGATGTCTTCTTGTAGCAGTTGATGCAACACTGTCTATCAAATGGAATTCATGGTGCTACTGCTAATCTGATAGAATTTCC ]
[+] EMBL AU030291 [ GTTCTACGCCACCTGCTTCGGCTTCCGCGAGCCCTACAGGGTGCTCGTCGACGGCACCTTCGTCCACCACCTCCTCAGTCACAGCCTCCTCCCCGCCGACGACGCCCTCCAGTCCCTCCTCTCCGCCTCCAGGCCCCCTCCCCTCTTCACCTCCAAGTGCGTCCTCGCCGAGCTCAGGCGCCTCGGCAAGTCCCACGCCGACGCCTTCGACGCCGCCGCCCTGCTCGCCACGGCCAAGTGTGAGCATGACAAAGTAGTCAGTGCAGTGGATTGTGTTCTGTCACTGATAGGTGAAAAGAATCCCGAACACTTCTTTGTTG CAACCAGGATTCTGATCTCCGTGCAAAG TACGGGAGGTTCCTGGTGTTCCTGTGATATATGGTCTGAAGA NTCCTTGTTAATTGAANAA CCTCTG ]
[+] EMBL AU030292 [ TGCNTATCCAGAGGCAGAGCTNGGTGGCNCAATGTTTTGAAGATAGAAATCATACTGATCTCATGNTGTGCCACTCATTGAGTCGNCTGCNTTCTTTGAATTGTAATGCTTGATTGTTCACAGATATTTNTGATAGATCCGTATAGGATGTATCTGGATGTCTTCTTGTAGCAGTTGATGCAACACTGTCTNTCAAATGGAATTCATGGTGCTACTGCTAATCTGATAGAAaaaaaaa]
consensusID : consensus_6827#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 172 fasta sequence
[TGCCACTCATTGAGTCGGCTGCGTTCTTTGAATTGTAATGCTTGATTGTTCACAGATATTTATGATAGATCCGTATAGGATGTATCTGGATGTCTTCTTGTAGCAGTTGATCGCAACACTGTCTATCAAATGGAATTCCTCGCCTGATAGAATCTCCTATTGGGTTCAAAAA]
[+] EMBL BI798058 [TGCCACTCATTGAGTCGGCTGCGTTCTTTGAATTGTAATGCTTGATTGTTCACAGATATTTATGATAGATCCGTATAGGATGTATCTGGATGTCTTCTTGTAGCAGTTGATCGCAACACTGTCTATCAAATGGAATTCCTCGCCTGATAGAATCTCCTATTGGGTTCAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6827#0 ACTCTTCGACCTCCACGCCGACGTCGCGCTGCGCCTGCCACCTTTATCTTGAACCGCGAC 60
consensus_6827#1 ------------------------------------------------------------
consensus_6827#0 GTCGTTGTCCGCCCCTCCCGCGCCGGCGAGGCGACCGAGCCCCCTCCCCTCCTTCCCTGC 120
consensus_6827#1 ------------------------------------------------------------
consensus_6827#0 CTCGTGCCACTAGCGCCGCCCTTCGCCGCCGCCGCCGCCGCCGCCCGCGAGGGAGACGCG 180
consensus_6827#1 ------------------------------------------------------------
consensus_6827#0 AGAAGGATGAGGGTGAAGAGGCGGTCCAAGAACCGCAAGGTGGTCAGGTTCTACGCCACC 240
consensus_6827#1 ------------------------------------------------------------
consensus_6827#0 TGCTTCGGCTTCCGCGAGCCCTACAGGGTGCTCGTCGACGGCACCTTCGTCCACCACCTC 300
consensus_6827#1 ------------------------------------------------------------
consensus_6827#0 CTCAGTCACAGCCTCCTCCCCGCCGACGACGCCCTCCAGTCCCTCCTCTCCGCCTCCAGG 360
consensus_6827#1 ------------------------------------------------------------
consensus_6827#0 CCCCCTCCCCTCTTCACCTCCAAGTGCGTCCTCGCCGAGCTCAGGCGCCTCGGCAAGTCC 420
consensus_6827#1 ------------------------------------------------------------
consensus_6827#0 CACGCCGACGCCTTCGACGCCGCCGCCCTGCTCGCCACGGCCAAGTGTGAGCATGACAAA 480
consensus_6827#1 ------------------------------------------------------------
consensus_6827#0 GTAGTCAGTGCAGTGGATTGTGTTCTGTCACTGATAGGTGAAAAGAATCCCGAACACTTC 540
consensus_6827#1 ------------------------------------------------------------
consensus_6827#0 TTTGTTGCCACCCAGGATTCTGATCTCCGTGCAAAGCTACGGGAGGTTCCTGGTGTTCCT 600
consensus_6827#1 ------------------------------------------------------------
consensus_6827#0 GTGATATATGGTCTGAAGAGCTCCTTGTTCATTGAACAACCCTCTGTGCAGCAACGTAAA 660
consensus_6827#1 ------------------------------------------------------------
consensus_6827#0 TTTGCTCAGTTGGACGAGGAGAAGCGTCTGCATATGGGTAAATCAGAATATCAGAAGCTA 720
consensus_6827#1 ------------------------------------------------------------
consensus_6827#0 CTGAAGGTTCCATCGGATGGAAAGGCGGCTGCCAGTGAAAACGCAAGTGATGATGAAAAG 780
consensus_6827#1 ------------------------------------------------------------
consensus_6827#0 AACAGAAGGCCTATCAGTTCTCTTGTAGAAAATGCACTTGGGGTGGCCGACAAAAGCAAA 840
consensus_6827#1 ------------------------------------------------------------
consensus_6827#0 TTTAAGAAGAAAAGACCAAAGGGACCAAACCCACTCTCCTGTAAGAAAAAGAAACCAAAG 900
consensus_6827#1 ------------------------------------------------------------
consensus_6827#0 CCCCAATTGTCAGCTGCTCAAAATCAGGGGCCCAAAGCTGATGGGGAGGCAAAGCGAAAG 960
consensus_6827#1 ------------------------------------------------------------
consensus_6827#0 AGAGTTAGGAAGCGGAAGAGAAGCCACAAAGATAGCAAGCAAACGGAAACAATGAGCTAA 1020
consensus_6827#1 ------------------------------------------------------------
consensus_6827#0 GAAAGATGAGCTGCAAAGTTAAGAAACTCTCGCTGCATATCCAGAGGCAGAGCTAGGTGG 1080
consensus_6827#1 ------------------------------------------------------------
consensus_6827#0 CACAATGTTTTGAAGATAGAAATCATACTGATCTCATGGTGTGCCACTCATTGAGTCGGC 1140
consensus_6827#1 -----------------------------------------TGCCACTCATTGAGTCGGC 19
*******************
consensus_6827#0 TGCGTTCTTTGAATTGTAATGCTTGATTGTTCACAGATATTTATGATAGATCCGTATAGG 1200
consensus_6827#1 TGCGTTCTTTGAATTGTAATGCTTGATTGTTCACAGATATTTATGATAGATCCGTATAGG 79
************************************************************
consensus_6827#0 ATGTATCTGGATGTCTTCTTGTAGCAGTTGAT-GCAACACTGTCTATCAAATGGAATTCA 1259
consensus_6827#1 ATGTATCTGGATGTCTTCTTGTAGCAGTTGATCGCAACACTGTCTATCAAATGGAATTCC 139
******************************** **************************
consensus_6827#0 TGGTGCTACTGCTAATCTGATAGAATTTCCAA- 1291
consensus_6827#1 TCGCCTGATAGAATCTCCTATTGGGTTCAAAAA 172
* * * * ** ** * ** **
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||