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Oryza sativa
cluster # 6837 cluster # 6837       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6837#0 length = 1326 sequences # 4  

consensusID : consensus_6837#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1326
fasta sequence
                              [CATCCCTTTCCCGCCTCAAACCCCCCAACCCCAATGCTCAGAGAACTCCAGCCCTCTCCATCACCGTCCCTTTCCGGCTTCGTCTCCCCAACCGGCGGCTCACCGCCGCGGCGGTGTTCCAGGACCAGACCAACCCAAGAAACCCAGCGAGCAAGGGAGGCGACGACGATGAGGCGTACGGCGAGGTGGACCGTATTGTGTCCAGCCGCACCATCAAGAATCCGGTGTTCGCGGAGGACGGCTCGGCCACCACGGTCACCGCCACGGAGTACCTCGTCGAGTGGAAGGACGGGCACGAGCCTTCGTGGATCCCGGCGGAGGCCATAGCGGCGGACGTGGTGGCGGAGTACGAGACGCCGTGGTGGACGGCCGCCAAGAAGGCGGACGCGGCGGAGATCACTGCGCTACTCGCGGACGAGACGCTGCGGCGTGACCCCGACGCGGAGGATGCGCAGGGGCGCACGGCGATGCACTTCGCCGCGGGGCTTGGATCCGAGGAGTGCGTGCGCGCGCTCGCCGAGGCCGGGGCCGACGTGGGGCGACCCGAGCGCGCCGGCGGCGGGCTCACGCCGCTGCACATCGCGGTCGGGTACGGGCGTCCGGCGGCCGTGCGCGCGCTGCTGGAGCTGGGCGCCGAGCCGGAGGCCCCCGACGGGCAGGGCCGGACGCCGCTGGAGCTGGTCCAGGACGTGCTCGCGAAGACGCCCAAGGGCAACCCGGCGACGTTCGAGCGGCGGCTGGCGCTGGAGGCGGCGGCGAAGGAGCTGGAGAAGGCCGTGTACGAGTGGGGCGAAGTGGAGAAGGTGGTGGACGGCCGCGGCGAGGGCAAGTGGCGGGAGTACTTGGTGGAGTGGCGCGACGGCGGCGACAGGGAGTGGGTGAGGGCGGCGTGGGTGGCGGAGGACCTGGTGAAGGACTTCGACGCCGGGCTGGAGTACGCCGTCGCGGAGGCCGTCGTCGACA-AGAGGGAGGCGGCGGAAGGGGAGGGGAAATGGGAGTACCTTGTCAAGTGGGTGGACATCGAGGAGGCGACGTGGGAGCCCGCGGAGAACGTCGACGCCGAACTCCTCCAGGAGTTCGAGCAGCGGCAATCTGGGGTGGCTGCTGGCGGTGATGCTCC-CCGCC-CCGCCGGTCGCCGGGTGACAGCGTGTCGC-CGTCGACGGAGGGTGTTCGATTCTTCCTGGTTTTGCTGTGTATAACAGAACGGGATAAAATGTTTGTGCTGCTGCAAAATGTATCA-TTAGCGCTTTGATAATTTTTGAGTTGAGCAGAACTTTAGCCTCAGATT-CCAATTTGAGAAATGTGAAGAGTTTCAGAAAAAAAAAA]

[+] EMBL AK099900             [CATCCCTTTCCCGCCTCAAACCCCCCAACCCCAATGCTCAGAGAACTCCAGCCCTCTCCATCACCGTCCCTTTCCGGCTTCGTCTCCCCAACCGGCGGCTCACCGCCGCGGCGGTGTTCCAGGACCAGACCAACCCAAGAAACCCAGCGAGCAAGGGAGGCGACGACGATGAGGCGTACGGCGAGGTGGACCGTATTGTGTCCAGCCGCACCATCAAGAATCCGGTGTTCGCGGAGGACGGCTCGGCCACCACGGTCACCGCCACGGAGTACCTCGTCGAGTGGAAGGACGGGCACGAGCCTTCGTGGATCCCGGCGGAGGCCATAGCGGCGGACGTGGTGGCGGAGTACGAGACGCCGTGGTGGACGGCCGCCAAGAAGGCGGACGCGGCGGAGATCACTGCGCTACTCGCGGACGAGACGCTGCGGCGTGACCCCGACGCGGAGGATGCGCAGGGGCGCACGGCGATGCACTTCGCCGCGGGGCTTGGATCCGAGGAGTGCGTGCGCGCGCTCGCCGAGGCCGGGGCCGACGTGGGGCGACCCGAGCGCGCCGGCGGCGGGCTCACGCCGCTGCACATCGCGGTCGGGTACGGGCGTCCGGCGGCCGTGCGCGCGCTGCTGGAGCTGGGCGCCGAGCCGGAGGCCCCCGACGGGCAGGGCCGGACGCCGCTGGAGCTGGTCCAGGACGTGCTCGCGAAGACGCCCAAGGGCAACCCGGCGACGTTCGAGCGGCGGCTGGCGCTGGAGGCGGCGGCGAAGGAGCTGGAGAAGGCCGTGTACGAGTGGGGCGAAGTGGAGAAGGTGGTGGACGGCCGCGGCGAGGGCAAGTGGCGGGAGTACTTGGTGGAGTGGCGCGACGGCGGCGACAGGGAGTGGGTGAGGGCGGCGTGGGTGGCGGAGGACCTGGTGAAGGACTTCGACGCCGGGCTGGAGTACGCCGTCGCGGAGGCCGTCGTCAACA AGAGGGAGGCGGCGGAAGGGGAGGGGAAATGGGAGTACCTTGTCAAGTGGGTGGACATCGAGGAGGCGACGTGGGAGCCCGCGGAGAACGTCGACGCCGAACTCCTCCAGGAGTTCGAGCAGCGGCAATCTGGGGTGGCTGCTGGCGGTGATGCTCCGCCGCCGCCGCCGGTCGCCGGGTGACAGCGTGTCGC CGTCGACGGAGGGTGTTCGATTCTTCCTGGTTTTGCTGTGTTTAACAGAACGGGATAAAATGTTTGTGCTGCTGCAAAATGTATCA TTAGCGCTTTGATAATTTTTGAGTTGAGCAGA                                                       ]
[+] EMBL BQ907478             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GTGGAGAAGGTGGTGGAC GCC CGGCGAGGGCAA TGGCGGGAGTACTT GTGGAGTGGCGCGAC GCGGCGACAGGGAGTGGGTGA GGCGGCGTGGGTGGCGGAGGACCTGGTGAAGGACTTCGACGCCGGGCTGGAGTACGCCGTCGCGGAGGCCGTCGTCGACACAGAGGGAGGCGGCGGAAGGGGAGGGGAAATGGGAGTACCTTGTCAAGTGGGTGGACATCGAGGAGGCGACGTGGGAGCCCGCGGAGAACGTCGACGCCGAACTCCTCCAGGAGTTCGAGCA CGGC ATCT GGGTGGCT CT GCGGTGATGCTCC CC CC CC CC GTC CCGGGTGACAGCGTGTC C C TCGAC GAGGGTGTTCGATTCTTCCTGGTTTTGCTGTGTATAAC GAACGGGATAAAATGTTTGTGCTGCTGC AAATGTATCATTTAGCGCTTTGATAATTTTTGAGTTGA                                                            ]
[+] EMBL BQ907676             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GGACCTGGTGAAGGACTTCGACGCCGGGCTGGAGTACGCCGTCGCGGA GCCGTCGTCGACA AGAGGGA GCGGCGGAAGGGGAGGGGAAATGGGAGTACCTTGTCAAGTGGGTGGACATCGAGGAGGCGACGTGGGAGCCCGCGGAGAACGTCGACGCCGAACTCCTCCAGGAGTTCGAGCAGCGGCAATCTGGGGT GCTGCTGGCGGTGATGCTCC CCGCC CCGCCGGTCGCCGGGTGACAGCGTGTCGC CGTCGACGGAGGGTGTTCGATTCTTCCT GTTTTGCTGTGTATAACAGAACGGGATAAAATGTTTGTGCTGCT C AAATGTATCA TTAGCGCTTTGATAATTTTTGA TTGACCAGAACTTTAGCCTCAGATT CCAATTTGAGAAATGTGAAGAGTTTCAGAAAAAAAAAA]
[+] EMBL BI811893             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TGTCGCACGTCGACGGAGGGTGTTCGATTCTTCCTGGTTTTGCTGTGTATAACAGAACGGGATAAAATGTTTGTGCTGCTGCAAAATGTATCA TTAGCGCTTTGATAATTTTTGAGTTGAGCAGAACTTTAGCCTCAGATTGCAAATTTGAAAAAaaaaa                    ]


>consensus_6837#0 CATCCCTTTCCCGCCTCAAACCCCCCAACCCCAATGCTCAGAGAACTCCAGCCCTCTCCA TCACCGTCCCTTTCCGGCTTCGTCTCCCCAACCGGCGGCTCACCGCCGCGGCGGTGTTCC AGGACCAGACCAACCCAAGAAACCCAGCGAGCAAGGGAGGCGACGACGATGAGGCGTACG GCGAGGTGGACCGTATTGTGTCCAGCCGCACCATCAAGAATCCGGTGTTCGCGGAGGACG GCTCGGCCACCACGGTCACCGCCACGGAGTACCTCGTCGAGTGGAAGGACGGGCACGAGC CTTCGTGGATCCCGGCGGAGGCCATAGCGGCGGACGTGGTGGCGGAGTACGAGACGCCGT GGTGGACGGCCGCCAAGAAGGCGGACGCGGCGGAGATCACTGCGCTACTCGCGGACGAGA CGCTGCGGCGTGACCCCGACGCGGAGGATGCGCAGGGGCGCACGGCGATGCACTTCGCCG CGGGGCTTGGATCCGAGGAGTGCGTGCGCGCGCTCGCCGAGGCCGGGGCCGACGTGGGGC GACCCGAGCGCGCCGGCGGCGGGCTCACGCCGCTGCACATCGCGGTCGGGTACGGGCGTC CGGCGGCCGTGCGCGCGCTGCTGGAGCTGGGCGCCGAGCCGGAGGCCCCCGACGGGCAGG GCCGGACGCCGCTGGAGCTGGTCCAGGACGTGCTCGCGAAGACGCCCAAGGGCAACCCGG CGACGTTCGAGCGGCGGCTGGCGCTGGAGGCGGCGGCGAAGGAGCTGGAGAAGGCCGTGT ACGAGTGGGGCGAAGTGGAGAAGGTGGTGGACGGCCGCGGCGAGGGCAAGTGGCGGGAGT ACTTGGTGGAGTGGCGCGACGGCGGCGACAGGGAGTGGGTGAGGGCGGCGTGGGTGGCGG AGGACCTGGTGAAGGACTTCGACGCCGGGCTGGAGTACGCCGTCGCGGAGGCCGTCGTCG ACAAGAGGGAGGCGGCGGAAGGGGAGGGGAAATGGGAGTACCTTGTCAAGTGGGTGGACA TCGAGGAGGCGACGTGGGAGCCCGCGGAGAACGTCGACGCCGAACTCCTCCAGGAGTTCG AGCAGCGGCAATCTGGGGTGGCTGCTGGCGGTGATGCTCCCCGCCCCGCCGGTCGCCGGG TGACAGCGTGTCGCCGTCGACGGAGGGTGTTCGATTCTTCCTGGTTTTGCTGTGTATAAC AGAACGGGATAAAATGTTTGTGCTGCTGCAAAATGTATCATTAGCGCTTTGATAATTTTT GAGTTGAGCAGAACTTTAGCCTCAGATTCCAATTTGAGAAATGTGAAGAGTTTCAGAAAA AAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)