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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6856#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1090 fasta sequence
[CGCAACCCACGCTGCCCCACTCTCGCCAACCCCCTCCACGTCCACGATCTGCCCGCTTTGCAGTGCCCGGGCGCCATGGACGCCGCCTCCTGC-GTGGGC-GTGGCCCCGGCCGCGCTGCTGTCCAGGTCCTTCTCCGACGCCGCCGCCATCGCCCGCGCGCTCCACTTCTCCCTCTGCGACTCCTCGCCGCTCCCCGAGCCGACGACGCATCAGTACGTTGCTGCCACCGACGTCGACCTTGGCGCGTGCGGCGTTGCCGTGGCCGCGCCCACGCCTGCAGTGTCGAGCGAGAACGCCGTGGTGCTGAAAACCCGGGCGTCGTTGTCGCCGTCGGCTCGGTGCCGGCTTGGGCCGGCGGGTGGCGGGCGCGCGGGGAAGCGGCGGCCGAGGCCGTCGAAGCGGGCGCCCACCACGTACATCAGCACCGACGCGGCCACGTTCCGCATCATGGTGCAGCAGGTGACCGGCGCGCAGGTCGAGCCGCAGGACGACGCCTGCCTCGGCCTCCTCATGCCACCACCGCCCTTCGACGTCGTCGACCCCGCCGCCTTGCTACCGGCAGACACCGCGGCGTGCGCGGGCGCGGCCCACGTCGCCACTTGCGTCCCCCACCCTCTCCACGCTGCCGCTGCTGCGGCGGCAGCGGTGGCTGCCCCGGAGCAGCCGTGCTTCCCGACGCTGGACTCGTGGAACGTCATGTACGGCAAGGACGAGGTTGTTTGAATTACCAAGGTAGGAGTACTACGTACTTGTAACTAATGAATGATGCATGCCATCGTGTGCCCTGCCCATCGATCGCTTGCTCCCATCGTCTGTTCGACGTAGAATTGTAGAGAGAAGCTGTACATTACTGCACGCAGTGAGCCGTGTGTCCGTGGTGGCAGAGCGCGTCGGAGTGTGCTAGCTTAGCTAGTGTAGCAAATTAGCAACCAGGTTCCCGGCTCTCCTACCTTTCTTGTGATGGATTCCTATAGTTGCACTTGCAGATGCGTCTCAATGTCCCATTGATCCATTTTGCCCTTCAATCTCTGCTTTTCCGGCCCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK108145 [CGCAACCCACGCTGCCCCACTCTCGCCAACCCCCTCCACGTCCACGATCTGCCCGCTTTGCAGTGCCCGGGCGCCATGGACGCCGCCTCCTGC GTGGGC GTGGCCCCGGCCGCGCTGCTGTCCAGGTCCTTCTCCGACGCCGCCGCCATCGCCCGCGCGCTCCACTTCTCCCTCTGCGACTCCTCGCCGCTCCCCGAGCCGACGACGCATCAGTACGTTGCTGCCACCGACGTCGACCTTGGCGCGTGCGGCGTTGCCGTGGCCGCGCCCACGCCTGCAGTGTCGAGCGAGAACGCCGTGGTGCTGAAAACCCGGGCGTCGTTGTCGCCGTCGGCTCGGTGCCGGCTTGGGCCGGCGGGTGGCGGGCGCGCGGGGAAGCGGCGGCCGAGGCCGTCGAAGCGGGCGCCCACCACGTACATCAGCACCGACGCGGCCACGTTCCGCATCATGGTGCAGCAGGTGACCGGCGCGCAGGTCGAGCCGCAGGACGACGCCTGCCTCGGCCTCCTCATGCCACCACCGCCCTTCGACGTCGTCGACCCCGCCGCCTTGCTACCGGCAGACACCGCGGCGTGCGCGGGCGCGGCCCACGTCGCCACTTGCGTCCCCCACCCTCTCCACGCTGCCGCTGCTGCGGCGGCAGCGGTGGCTGCCCCGGAGCAGCCGTGCTTCCCGACGCTGGACTCGTGGAACGTCATGTACGGCAAGGACGAGGTTGTTTGAATTACCAAGGTAGGAGTACTACGTACTTGTAACTAATGAATGATGCATGCCATCGTGTGCCCTGCCCATCGATCGCTTGCTCCCATCGTCTGTTCGACGTAGAATTGTAGAGAGAAGCTGTACATTACTGCACGCAGTGAGCCGTGTGTCCGTGGTGGCAGAGCGCGTCGGAGTGTGCTAGCTTAGCTAGTGTAGCAAATTAGCAACCAGGTTCCCGGCTCTCCTACCTTTCTTGTGATGGATTCCTATAGTTGCACTTGCAGATGCGTCTCAATGTCCCATTGATCCATTTTGCCCTTCAATCTCTGC ]
[+] EMBL AU173035 [ CCACTCTCGCCAACCCCCTCCACGTCCACGATCTGCCCGCTTTGCAGTGCCCGGGCGCCATGGACGCCGCCTCCTGCAGTGGGCAGTGGCCCCGGCCGAGCTGCTGTCCAGGTCCTTCTCCGACGCCGCCGCCATCGCCCGCGCGCTCCACTTCTCCCTCTGCGACTCCTCGCCGCTCCCCGAGCCGACGACGCATCAGTACGTTGCTGCCACCGACGTCGACCTTGGCGCGTGCGGAGTTGCCGTGGCCGCGCCCACGCCTGCAGTGTCGAGCGAGAACGCCGTGGTGCTGAAAACCCGGGCGTCGTTGTCGCCGTCGGCTCGGTGCCGGCTTGGGCCGGCGGGTGGCGGGCGCGCGGGGAAGCGGCGGCCGAGGCCGTCGAAGCGGGCGCCCACCACGTACATCAGCACCGACGCGGNCACGTTC ]
[+] EMBL CF321342 [ gagtagaaaAGAATTGTAGAGAGAAGCTGTACATTACTGCACGCAGTGAGCCGTGTGTCCGTGGTGGCAGAGCGCGTCGGAGTGTGCTAGCTTAGCTAGTGTAGCAAATTAGCAACCAGGTTCCCGGCTCTCCTACCTTTCTTGTGATGGATTCCTATAGTTGCACTTGCAGATGCGTCTCAATGTCCCATTGATCCATTTTGCCCTTCAATCTCTGCTTTTCCGGCCCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_6856#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 375 fasta sequence
[CTGNTGCGGCCGGCAGCGGTGGCTGCCCCGGAGCAGCCGTGTTTCCCGACGCTGGACTCGTGGAACGTCATGTACGGCAAGGACGAGGTTGTTTGAATTACCAAGGTAGGATACTACGTACTTGTAACTAATGAATGATGCATGCCATCGTGTGCCCTGCCCATCGATCGCTTGCTCCCATCGTCTGTTCGACGTAGAATTGTAGAGAGAAGCTGTACATTACTGCACGCNGTGAGCCGTGTGTCCGTGGTGGCAGAGCGCGTCGGAGTGTGCTAGCTTAGCTAGTGTAGCAAATTAGCAACCAGGTTCCCGGCTCTCCTACCTTTCTTGTGATGGATTCCTATAGTTGCNCTTGCAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU031129 [CTGNTGCGGCCGGCAGCGGTGGCTGCCCCGGAGCAGCCGTGTTTCCCGACGCTGGACTCGTGGAACGTCATGTACGGCAAGGACGAGGTTGTTTGAATTACCAAGGTAGGATACTACGTACTTGTAACTAATGAATGATGCATGCCATCGTGTGCCCTGCCCATCGATCGCTTGCTCCCATCGTCTGTTCGACGTAGAATTGTAGAGAGAAGCTGTACATTACTGCACGCNGTGAGCCGTGTGTCCGTGGTGGCAGAGCGCGTCGGAGTGTGCTAGCTTAGCTAGTGTAGCAAATTAGCAACCAGGTTCCCGGCTCTCCTACCTTTCTTGTGATGGATTCCTATAGTTGCNCTTGCAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6856#0 CGCAACCCACGCTGCCCCACTCTCGCCAACCCCCTCCACGTCCACGATCTGCCCGCTTTG 60
consensus_6856#1 ------------------------------------------------------------
consensus_6856#0 CAGTGCCCGGGCGCCATGGACGCCGCCTCCTGCGTGGGCGTGGCCCCGGCCGCGCTGCTG 120
consensus_6856#1 ------------------------------------------------------------
consensus_6856#0 TCCAGGTCCTTCTCCGACGCCGCCGCCATCGCCCGCGCGCTCCACTTCTCCCTCTGCGAC 180
consensus_6856#1 ------------------------------------------------------------
consensus_6856#0 TCCTCGCCGCTCCCCGAGCCGACGACGCATCAGTACGTTGCTGCCACCGACGTCGACCTT 240
consensus_6856#1 ------------------------------------------------------------
consensus_6856#0 GGCGCGTGCGGCGTTGCCGTGGCCGCGCCCACGCCTGCAGTGTCGAGCGAGAACGCCGTG 300
consensus_6856#1 ------------------------------------------------------------
consensus_6856#0 GTGCTGAAAACCCGGGCGTCGTTGTCGCCGTCGGCTCGGTGCCGGCTTGGGCCGGCGGGT 360
consensus_6856#1 ------------------------------------------------------------
consensus_6856#0 GGCGGGCGCGCGGGGAAGCGGCGGCCGAGGCCGTCGAAGCGGGCGCCCACCACGTACATC 420
consensus_6856#1 ------------------------------------------------------------
consensus_6856#0 AGCACCGACGCGGCCACGTTCCGCATCATGGTGCAGCAGGTGACCGGCGCGCAGGTCGAG 480
consensus_6856#1 ------------------------------------------------------------
consensus_6856#0 CCGCAGGACGACGCCTGCCTCGGCCTCCTCATGCCACCACCGCCCTTCGACGTCGTCGAC 540
consensus_6856#1 ------------------------------------------------------------
consensus_6856#0 CCCGCCGCCTTGCTACCGGCAGACACCGCGGCGTGCGCGGGCGCGGCCCACGTCGCCACT 600
consensus_6856#1 ------------------------------------------------------------
consensus_6856#0 TGCGTCCCCCACCCTCTCCACGCTGCCGCTGCTGCGGC-GGCAGCGGTGGCTGCCCCGGA 659
consensus_6856#1 ----------------------------CTGNTGCGGCCGGCAGCGGTGGCTGCCCCGGA 32
*** ****** *********************
consensus_6856#0 GCAGCCGTGCTTCCCGACGCTGGACTCGTGGAACGTCATGTACGGCAAGGACGAGGTTGT 719
consensus_6856#1 GCAGCCGTGTTTCCCGACGCTGGACTCGTGGAACGTCATGTACGGCAAGGACGAGGTTGT 92
********* **************************************************
consensus_6856#0 TTGAATTACCAAGGTAGGAGTACTACGTACTTGTAACTAATGAATGATGCATGCCATCGT 779
consensus_6856#1 TTGAATTACCAAGGTAGGA-TACTACGTACTTGTAACTAATGAATGATGCATGCCATCGT 151
******************* ****************************************
consensus_6856#0 GTGCCCTGCCCATCGATCGCTTGCTCCCATCGTCTGTTCGACGTAGAATTGTAGAGAGAA 839
consensus_6856#1 GTGCCCTGCCCATCGATCGCTTGCTCCCATCGTCTGTTCGACGTAGAATTGTAGAGAGAA 211
************************************************************
consensus_6856#0 GCTGTACATTACTGCACGCAGTGAGCCGTGTGTCCGTGGTGGCAGAGCGCGTCGGAGTGT 899
consensus_6856#1 GCTGTACATTACTGCACGCNGTGAGCCGTGTGTCCGTGGTGGCAGAGCGCGTCGGAGTGT 271
******************* ****************************************
consensus_6856#0 GCTAGCTTAGCTAGTGTAGCAAATTAGCAACCAGGTTCCCGGCTCTCCTACCTTTCTTGT 959
consensus_6856#1 GCTAGCTTAGCTAGTGTAGCAAATTAGCAACCAGGTTCCCGGCTCTCCTACCTTTCTTGT 331
************************************************************
consensus_6856#0 GATGGATTCCTATAGTTGCACTTGCAGATGCGTCTCAATGTCCCATTGATCCATTTTGCC 1019
consensus_6856#1 GATGGATTCCTATAGTTGCNCTTGCAAAAAAAAAAAAAAAAAAA---------------- 375
******************* ****** * **
consensus_6856#0 CTTCAATCTCTGCTTTTCCGGCCCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1079
consensus_6856#1 ------------------------------------------------------------
consensus_6856#0 AAAAAAAAAAA 1090
consensus_6856#1 -----------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||