These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6857#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1950 fasta sequence [GATCGATCGATATCGATAGGCAGCAGAAGGGGAGAAAAGGAAACCGATCTCGGTCATGGCCACGCCCACCACTTTGGTCGCCGCCTCCAGCCATCGCCGTCGTCGCCGGCGTGGATCCACACCGGCACAGGCACAGGCACAGGCACCGGCACCGGAGGGGGTGCCGGGGTGGATCCTTCTGAACAGCGGTGCCCACATCGGCAGCCGCTCCAACGCCACCACCGCCGTCGGTGAGGCGAGGGACAAGCTGACGATAGAGGTGTCCTTGTGGCCGGCGCAGCCGCCGCACCCCTCCGACGTGTTCGTGTGTTGCCCGGGCGTCCGCCACCCCCGCGAATCCGAGATCCTCTTCACGGCCCAAGATCTGCTGCTGCTGCGTGTCCCGGTCGCCGCCGGGGCTGCGCCGAGCCTCATCAGCTTCACGGAGTGCGATTACCTCATCTACCGTGCCGCCGCCGGCGACCGTCGTCCGTCGCTCACGCTGCTCCCGAATCCAAAGCCCAACTACTTCCACGACGGGGATGTCGGCATCCTTCCCCGAGGCGGGGGCGAGTACACGGTCGCGGCCCTGGTTGCTAGACGACGCCGGGGGCAGGTGGACCACCAAGACGGTGTGGATGGACGACCCGCGGAGGCCTCCCCCTGTGGAGATCCCCATCAACGCAAGGCGGCTCAACCACCACATCACCACCACCACCATCACGCTCGGCGGCGAGCTGGCCGGTGCCATGGGCTGGGTCGATCTCTGGACCGGCATCCTAATCTACGATCTCCTCCATGACGACAAGGACCAAGACCGGCCAACGCTCCGGCACATGCCGCTGCCGCTGCCGATGCACGCCATCACCGGCAACCACGGGATGGGCGACAAGCTAGCCTTAGGCTGCCCACGCTCTCTCCGTGGCATTGCCTCTGTCACGAGGCGCGGCAAGGCCTGCCTCAAGCTCGCCGGCGTGCATGTCACCGGAGAGCGCCTCCCCTACAACGACGCTGAAACCCAGCTGCCGGCGTTCGCCGTCGACGACTGGACTGTCACGACATGGAGCAATGACAAGATGAAGGGCTACTTTGAGGACTGGCAGGAGGATTTCACGATTCGCGGTTCCGAGGTCAGGATTAGCAACGCCATGCGCTCGGATCTGCTGAGATCTGGGTTGCTGTACCGTAAACCGTCACGAGGGGATGGCGATGAGGCTACGGTGGAGGAGCTGGCTTTGCACAATCTCTGGGTGTCTCATCCCACCCCCAGCCTAGATGGTGAAGAAGATGTCATCTACCTGCTGGCCAAGCCAAAGTGCTTCCACCCCAAGGCGTGGGTTCTTGCTCTCGACACGAGGAGCAGCACGCTGCTAGGCGTGGTTGAGTTTGGCACTGAAACCGCACCATCTGCAGGTGTCACGTATCGCCCCA-GTACTATATCCAAGTACATGAGTCTGGTGACTTCTCCAGT-GACTGGGAGAACTTAAAGGATGCTGCTGCTAATCACTGAATCAAGATGGTACTGCTGGCCTGTTTGGAGGCGATGCATCGAAGATTAAGACTGAATGATG-TTGTTAAACATATACTCCCTCCGTTTCATAATACAAGACTTTCTAGCATTGCTCATATTTATATATATGTTAATAAATCTAGACACATATTTGTATAGATTTACTAACATCTATATGAATATGGACAATACTAAAAAGACTTGCATTATAAAACGGAGGAAGTATATGTTTACAGGGGTCTTGGCAATTTTGCATTCGGGTGCAAGAAACGTGTTTGTTTCCCTGCGCTGGTGGTTAGGAGTATTTATGTAAATTTCTCTAGTTGGAACAAACAGCCAGTAGCTTGTCGATCTGTTACTAACTTACGATGAAGCATCATCATTATCATCTCATAAAAACTTGTAATGGGATTTTATATTCGTGACTATCACGCACTTTGTTTAAGGGGAGAAGAGAAATC] [+] EMBL AK108630 [GATCGATCGATATCGATAGGCAGCAGAAGGGGAGAAAAGGAAACCGATCTCGGTCATGGCCACGCCCACCACTTTGGTCGCCGCCTCCAGCCATCGCCGTCGTCGCCGGCGTGGATCCACACCGGCACAGGCACAGGCACAGGCACCGGCACCGGAGGGGGTGCCGGGGTGGATCCTTCTGAACAGCGGTGCCCACATCGGCAGCCGCTCCAACGCCACCACCGCCGTCGGTGAGGCGAGGGACAAGCTGACGATAGAGGTGTCCTTGTGGCCGGCGCAGCCGCCGCACCCCTCCGACGTGTTCGTGTGTTGCCCGGGCGTCCGCCACCCCCGCGAATCCGAGATCCTCTTCACGGCCCAAGATCTGCTGCTGCTGCGTGTCCCGGTCGCCGCCGGGGCTGCGCCGAGCCTCATCAGCTTCACGGAGTGCGATTACCTCATCTACCGTGCCGCCGCCGGCGACCGTCGTCCGTCGCTCACGCTGCTCCCGAATCCAAAGCCCAACTACTTCCACGACGGGGATGTCGGCATCCTTCCCCGAGGCGGGGGCGAGTACACGGTCGCGGCCCTGGTTGCTAGACGACGCCGGGGGCAGGTGGACCACCAAGACGGTGTGGATGGACGACCCGCGGAGGCCTCCCCCTGTGGAGATCCCCATCAACGCAAGGCGGCTCAACCACCACATCACCACCACCACCATCACGCTCGGCGGCGAGCTGGCCGGTGCCATGGGCTGGGTCGATCTCTGGACCGGCATCCTAATCTACGATCTCCTCCATGACGACAAGGACCAAGACCGGCCAACGCTCCGGCACATGCCGCTGCCGCTGCCGATGCACGCCATCACCGGCAACCACGGGATGGGCGACAAGCTAGCCTTAGGCTGCCCACGCTCTCTCCGTGGCATTGCCTCTGTCACGAGGCGCGGCAAGGCCTGCCTCAAGCTCGCCGGCGTGCATGTCACCGGAGAGCGCCTCCCCTACAACGACGCTGAAACCCAGCTGCCGGCGTTCGCCGTCGACGACTGGACTGTCACGACATGGAGCAATGACAAGATGAAGGGCTACTTTGAGGACTGGCAGGAGGATTTCACGATTCGCGGTTCCGAGGTCAGGATTAGCAACGCCATGCGCTCGGATCTGCTGAGATCTGGGTTGCTGTACCGTAAACCGTCACGAGGGGATGGCGATGAGGCTACGGTGGAGGAGCTGGCTTTGCACAATCTCTGGGTGTCTCATCCCACCCCCAGCCTAGATGGTGAAGAAGATGTCATCTACCTGCTGGCCAAGCCAAAGTGCTTCCACCCCAAGGCGTGGGTTCTTGCTCTCGACACGAGGAGCAGCACGCTGCTAGGCGTGGTTGAGTTTGGCACTGAAACCGCACCATCTGCAGGTGTCACGTATCGCCCCA GTACTATATCCAAGTACATGAGTCTGGTGACTTCTCCAGT GACTGGGAGAACTTAAAGGATGCTGCTGCTAATCACTGAATCAAGATGGTACTGCTGGCCTGTTTGGAGGCGATGCATCGAAGATTAAGACTGAATGATG TTGTTACACATATACTCCCTCCGTTTCATAATACAAGACTTTCTAGCATTGCTCATATTTATATATATGTTAATAAATCTAGACACATATTTGTATAGATTTACTAACATCTATATGAATATGGACAATACTAAAAAGACTTGCATTATAAAACGGAGGAAGTATATGTTTACAGGGGTCTTGGCAATTTTGCATTCGGGTGCAAGAAACGTGTTTGTTTCCCTGCGCTGGTGGTTAGGAGTATTTATGTAAATTTCTCTAGTTGGAACAAACAGCCAGTAGCTTGTCGATCTGTTACTAACTTACGATGAAGCATCATCATTATCATCTCATAAAAACTTGTAAT ] [-] EMBL CB619462 [ GGCTTTGCACAATCTCTGGGTGTCTCATCCCACCCCCAGCCTAGATGGTGAAGAAGATGTCATCTACCTGCTGGCCAAGCCAAAGTGCTTCCACCCCAAGGCGTGGGTTCTTGCTCTCGACACGAGGAGCAGCACGCTGCTAGGCGTGGTTGAGTTTGGCACTGAAATCGCACCATCTGCAGGTGTCACGTATCGCCCCA GTACTATATCCAAGTACATGAGTCTGGTGACTTCTCCAGT GACTGGGAGAACTTAAAGGATGCTGCTGCTAATCACTGAATCAAGATGGTACTGCTGGCCTGTTTGGAGGCGATGCATTGAAGATTAAGACTGAATGATG TTGTTAAACATATACTCCCTCCGTTTCATAATACAAGACTTTCTAGCATTGCTCATATTTATATATATGTTAATGAATCTAGACACATATTTGTATAGATTTACTAACATCTATATGAATATGGACAATACTAAAAAGACTTGCATTATGAAACGGAGGAAGTATATGTTTACAGGGGTCTTGGCAATTTTGCATTCGGGTGCAAGAAACGTGTTTGTTT CCTGCGCTGGTGGTTAGGAGTATTTATGTAAATTTCTCTAGTTGGAACAAACAGCCAGTAGCTTGTCGATCTGTTACTAACTTACGATGAAGCATCATCATTATCATCTCATAAAAACTTGTAATGGGATTTTATATTCGTGACTATCACGCACTTTGTTTAAGGGGAGAAGAGAAATC] [+] EMBL BI811310 [ ttTCACGT TCGCCCCACGGTCTATATCCAAGTACATGAGTCTGGGGACTTCTCCAGTGGACTGGGAGAACTTAAAGGATGCTGCTGCTAATCACTGAATCAAGATGGTACTGCTGGCCTGTTTGGAGGCGATGCATCGAAGATTAAGACTGAATGATGCTTGTTAAACATATACTCCCTCCGTTTCATAATACCAGACTTTCTAGCCTTGCTCATATTTATATATATGTTAATAAATCTAGACACATATTTGTATAGATTTACTAACATCTATATGAATATGGACAATACTAAAAAGACTTGCATTATAAAACGGAGGAAGTATATGTTTACAGGGGTCTTGGCAATTTTGCATTCGGGTGCAAGAAACGTGTTTGTTTCCCTGCGCTGGTGGTTAGGAGTATTTATGTAAATTTCTCTAGTTGG ACCAACAGCCCGT ] consensusID : consensus_6857#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 786 fasta sequence [AAGGGGCGTAAAGGAAACCGATCTCGGTCATGGCCACGCCCACCACTTTGGTCGCCGCCTCCAGCCATCGCCGTCGTCGCCGGCGTGGATCCACACCGGCACAGGCACAGGCACAGGCACCGGCACCGGAGGGGGTGCCGGGGTGGATCCTTCTGAACAGCGGTGCCAACATCGGCAGCCGCTCCAACGCCACCACCGCCGTCGGTGAGGCGAGGGACAAGCTGACGATAGAGGTGTCCTTGTGGCCGGCGCAGCCGCCGCACCCCTCCGACGTGTTCGTGTGTTGCCCGGGCGTCCGCCACCCCCGCGAATCCGAGATCCTCTTCACGGCCCAAGATCTGCTGCTGCTGCGTGTCCCGGTCGCCGCCGGGGCTGCGCCGAGCCTCATCAGCTTCACGGAGTGCGATTACCTCATCTACCGTGCCGCCGCCGGCGACCGTCGTCCGTCGCTCACGCTGCTCCCGAATCCAAAGCCCAACTACTTCCACGACGGGGATGTCGGCATCCTTCCCCGAGGCGGGGGCGAGTACACGGTCGCGGCCCTGGTTGCTAGGCCCAGGGAGCGCGAGTATATGCTCCACCGCTTCGACTCCGACGACGCCGGGGGCAGGTGGACCACCAAGACGGTGTGGATGGACGACCCGCGGAGGCCTCCCCCTGTGGAGATCCCCATCAACGCAAGGCGGCTCAACCACCACATCACCACCACCACCATCACGCTCGGCGGCGAGCTGGCCGGCGCCATGGGCTGGGTCGATCTCTGGACCGGCATCCTAATCTACGATC] [+] EMBL CB619461 [AAGGGGCGTAAAGGAAACCGATCTCGGTCATGGCCACGCCCACCACTTTGGTCGCCGCCTCCAGCCATCGCCGTCGTCGCCGGCGTGGATCCACACCGGCACAGGCACAGGCACAGGCACCGGCACCGGAGGGGGTGCCGGGGTGGATCCTTCTGAACAGCGGTGCCAACATCGGCAGCCGCTCCAACGCCACCACCGCCGTCGGTGAGGCGAGGGACAAGCTGACGATAGAGGTGTCCTTGTGGCCGGCGCAGCCGCCGCACCCCTCCGACGTGTTCGTGTGTTGCCCGGGCGTCCGCCACCCCCGCGAATCCGAGATCCTCTTCACGGCCCAAGATCTGCTGCTGCTGCGTGTCCCGGTCGCCGCCGGGGCTGCGCCGAGCCTCATCAGCTTCACGGAGTGCGATTACCTCATCTACCGTGCCGCCGCCGGCGACCGTCGTCCGTCGCTCACGCTGCTCCCGAATCCAAAGCCCAACTACTTCCACGACGGGGATGTCGGCATCCTTCCCCGAGGCGGGGGCGAGTACACGGTCGCGGCCCTGGTTGCTAGGCCCAGGGAGCGCGAGTATATGCTCCACCGCTTCGACTCCGACGACGCCGGGGGCAGGTGGACCACCAAGACGGTGTGGATGGACGACCCGCGGAGGCCTCCCCCTGTGGAGATCCCCATCAACGCAAGGCGGCTCAACCACCACATCACCACCACCACCATCACGCTCGGCGGCGAGCTGGCCGGCGCCATGGGCTGGGTCGATCTCTGGACCGGCATCCTAATCTACGATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6857#0 GATCGATCGATATCGATAGGCAGCAGAAGGGGAGAAAAGGAAACCGATCTCGGTCATGGC 60 consensus_6857#1 --------------------------AAGGGGCGTAAAGGAAACCGATCTCGGTCATGGC 34 ****** * ************************* consensus_6857#0 CACGCCCACCACTTTGGTCGCCGCCTCCAGCCATCGCCGTCGTCGCCGGCGTGGATCCAC 120 consensus_6857#1 CACGCCCACCACTTTGGTCGCCGCCTCCAGCCATCGCCGTCGTCGCCGGCGTGGATCCAC 94 ************************************************************ consensus_6857#0 ACCGGCACAGGCACAGGCACAGGCACCGGCACCGGAGGGGGTGCCGGGGTGGATCCTTCT 180 consensus_6857#1 ACCGGCACAGGCACAGGCACAGGCACCGGCACCGGAGGGGGTGCCGGGGTGGATCCTTCT 154 ************************************************************ consensus_6857#0 GAACAGCGGTGCCCACATCGGCAGCCGCTCCAACGCCACCACCGCCGTCGGTGAGGCGAG 240 consensus_6857#1 GAACAGCGGTGCCAACATCGGCAGCCGCTCCAACGCCACCACCGCCGTCGGTGAGGCGAG 214 ************* ********************************************** consensus_6857#0 GGACAAGCTGACGATAGAGGTGTCCTTGTGGCCGGCGCAGCCGCCGCACCCCTCCGACGT 300 consensus_6857#1 GGACAAGCTGACGATAGAGGTGTCCTTGTGGCCGGCGCAGCCGCCGCACCCCTCCGACGT 274 ************************************************************ consensus_6857#0 GTTCGTGTGTTGCCCGGGCGTCCGCCACCCCCGCGAATCCGAGATCCTCTTCACGGCCCA 360 consensus_6857#1 GTTCGTGTGTTGCCCGGGCGTCCGCCACCCCCGCGAATCCGAGATCCTCTTCACGGCCCA 334 ************************************************************ consensus_6857#0 AGATCTGCTGCTGCTGCGTGTCCCGGTCGCCGCCGGGGCTGCGCCGAGCCTCATCAGCTT 420 consensus_6857#1 AGATCTGCTGCTGCTGCGTGTCCCGGTCGCCGCCGGGGCTGCGCCGAGCCTCATCAGCTT 394 ************************************************************ consensus_6857#0 CACGGAGTGCGATTACCTCATCTACCGTGCCGCCGCCGGCGACCGTCGTCCGTCGCTCAC 480 consensus_6857#1 CACGGAGTGCGATTACCTCATCTACCGTGCCGCCGCCGGCGACCGTCGTCCGTCGCTCAC 454 ************************************************************ consensus_6857#0 GCTGCTCCCGAATCCAAAGCCCAACTACTTCCACGACGGGGATGTCGGCATCCTTCCCCG 540 consensus_6857#1 GCTGCTCCCGAATCCAAAGCCCAACTACTTCCACGACGGGGATGTCGGCATCCTTCCCCG 514 ************************************************************ consensus_6857#0 AGGCGGGGGCGAGTACACGGTCGCGGCCCTGGTTGCTAG--------------------- 579 consensus_6857#1 AGGCGGGGGCGAGTACACGGTCGCGGCCCTGGTTGCTAGGCCCAGGGAGCGCGAGTATAT 574 *************************************** consensus_6857#0 --------------------ACGACGCCGGGGGCAGGTGGACCACCAAGACGGTGTGGAT 619 consensus_6857#1 GCTCCACCGCTTCGACTCCGACGACGCCGGGGGCAGGTGGACCACCAAGACGGTGTGGAT 634 **************************************** consensus_6857#0 GGACGACCCGCGGAGGCCTCCCCCTGTGGAGATCCCCATCAACGCAAGGCGGCTCAACCA 679 consensus_6857#1 GGACGACCCGCGGAGGCCTCCCCCTGTGGAGATCCCCATCAACGCAAGGCGGCTCAACCA 694 ************************************************************ consensus_6857#0 CCACATCACCACCACCACCATCACGCTCGGCGGCGAGCTGGCCGGTGCCATGGGCTGGGT 739 consensus_6857#1 CCACATCACCACCACCACCATCACGCTCGGCGGCGAGCTGGCCGGCGCCATGGGCTGGGT 754 ********************************************* ************** consensus_6857#0 CGATCTCTGGACCGGCATCCTAATCTACGATCTCCTCCATGACGACAAGGACCAAGACCG 799 consensus_6857#1 CGATCTCTGGACCGGCATCCTAATCTACGATC---------------------------- 786 ******************************** consensus_6857#0 GCCAACGCTCCGGCACATGCCGCTGCCGCTGCCGATGCACGCCATCACCGGCAACCACGG 859 consensus_6857#1 ------------------------------------------------------------ consensus_6857#0 GATGGGCGACAAGCTAGCCTTAGGCTGCCCACGCTCTCTCCGTGGCATTGCCTCTGTCAC 919 consensus_6857#1 ------------------------------------------------------------ consensus_6857#0 GAGGCGCGGCAAGGCCTGCCTCAAGCTCGCCGGCGTGCATGTCACCGGAGAGCGCCTCCC 979 consensus_6857#1 ------------------------------------------------------------ consensus_6857#0 CTACAACGACGCTGAAACCCAGCTGCCGGCGTTCGCCGTCGACGACTGGACTGTCACGAC 1039 consensus_6857#1 ------------------------------------------------------------ consensus_6857#0 ATGGAGCAATGACAAGATGAAGGGCTACTTTGAGGACTGGCAGGAGGATTTCACGATTCG 1099 consensus_6857#1 ------------------------------------------------------------ consensus_6857#0 CGGTTCCGAGGTCAGGATTAGCAACGCCATGCGCTCGGATCTGCTGAGATCTGGGTTGCT 1159 consensus_6857#1 ------------------------------------------------------------ consensus_6857#0 GTACCGTAAACCGTCACGAGGGGATGGCGATGAGGCTACGGTGGAGGAGCTGGCTTTGCA 1219 consensus_6857#1 ------------------------------------------------------------ consensus_6857#0 CAATCTCTGGGTGTCTCATCCCACCCCCAGCCTAGATGGTGAAGAAGATGTCATCTACCT 1279 consensus_6857#1 ------------------------------------------------------------ consensus_6857#0 GCTGGCCAAGCCAAAGTGCTTCCACCCCAAGGCGTGGGTTCTTGCTCTCGACACGAGGAG 1339 consensus_6857#1 ------------------------------------------------------------ consensus_6857#0 CAGCACGCTGCTAGGCGTGGTTGAGTTTGGCACTGAAACCGCACCATCTGCAGGTGTCAC 1399 consensus_6857#1 ------------------------------------------------------------ consensus_6857#0 GTATCGCCCCAGTACTATATCCAAGTACATGAGTCTGGTGACTTCTCCAGTGACTGGGAG 1459 consensus_6857#1 ------------------------------------------------------------ consensus_6857#0 AACTTAAAGGATGCTGCTGCTAATCACTGAATCAAGATGGTACTGCTGGCCTGTTTGGAG 1519 consensus_6857#1 ------------------------------------------------------------ consensus_6857#0 GCGATGCATCGAAGATTAAGACTGAATGATGTTGTTAAACATATACTCCCTCCGTTTCAT 1579 consensus_6857#1 ------------------------------------------------------------ consensus_6857#0 AATACAAGACTTTCTAGCATTGCTCATATTTATATATATGTTAATAAATCTAGACACATA 1639 consensus_6857#1 ------------------------------------------------------------ consensus_6857#0 TTTGTATAGATTTACTAACATCTATATGAATATGGACAATACTAAAAAGACTTGCATTAT 1699 consensus_6857#1 ------------------------------------------------------------ consensus_6857#0 AAAACGGAGGAAGTATATGTTTACAGGGGTCTTGGCAATTTTGCATTCGGGTGCAAGAAA 1759 consensus_6857#1 ------------------------------------------------------------ consensus_6857#0 CGTGTTTGTTTCCCTGCGCTGGTGGTTAGGAGTATTTATGTAAATTTCTCTAGTTGGAAC 1819 consensus_6857#1 ------------------------------------------------------------ consensus_6857#0 AAACAGCCAGTAGCTTGTCGATCTGTTACTAACTTACGATGAAGCATCATCATTATCATC 1879 consensus_6857#1 ------------------------------------------------------------ consensus_6857#0 TCATAAAAACTTGTAATGGGATTTTATATTCGTGACTATCACGCACTTTGTTTAAGGGGA 1939 consensus_6857#1 ------------------------------------------------------------ consensus_6857#0 GAAGAGAAATC 1950 consensus_6857#1 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||