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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6861#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1115 fasta sequence
[GCATCCCCAACCCCAACCCCTCCCCGCCTTGCGCCGCCGCCGCCGCCGCCACCGGCGCCGGCGATCCTCCGATGGGCGCCTCGGCCTCCGTCCTCTCCCTTCCCACGGCGGCCGCCATCCCGGGAGCCGCCACCGCTATAGCTGGCGCCGCGGGCTGCTTCGCCCTCGGCTACTTCCTCGCCCTCAGCCGCTTCCCCCGCCAGGTCGTCGCTGCCTCCCCCGCTTCCGGGGAGACCTCGGACGAGGATTCCGAGGAGGATTCGGAAGAAGATGATGATGACGAAAACTCCGGCCGCAGCCGGGCGGCGAAGCGGGCGCCCAAGCGCGCCGGGCTCCGGCTGCTGTTCTGGGCGCGCAACGTGGTGACCAAGTCCGACTCGGCGAAGGAGGCCGAGAGGGCCAAGGCACGGACCGCGGCTAGCCCCCTGGAGGTCGAGAATCTCGCTGAGATTATAGAGGATTTCAAGATGGTGCTGGTTGTGAGGAATGATTTGAAGATGGGGAAGGGGAAGATTGCCGCGCAATGCAGCCATGCAACGTTGGGTCTGTTTAAAAAACTCCAACAGAGAGCTCCAAAATCATTAAGAAGGTGGGAGAGGTGTGGTCAAGTTAAGGTGGTCGTGAAAATTGAAAGCGAGGAAGATATGCTTGTTTTACAAGGAAGAGCAAAGTCTTTGAATATCCCAACACACATAACTATTGATGCTGGAAGAACACAGATCGCACCAAATTCAAGAACAGTCATGGCTATTCTTGGGCCAGCTGACATGGTCGATGATGTCACCGGTGGTCTGAAGCTTCTATAAATTCTTGTTCTCGGTATCCTCAGACATAGGAATTTGAAGACAAACGCTTAAATTTGACAAACCACATTGGCTGCTGAAGAACGAACCCTGAAACTCATCGGCTCACTCAATCTTGTTGTTCGAGTATTTACCAGTGAAGAGGCTTAATTTCACTTTTACTTGTATGAACTGTCTTCGGAGCAATGGTTTTTTCTTTCTTCAGTTTTCCACTCTGCATTTGTTGCTGTGGACGTCTGAACTCTTAAATTTTTCTGTAACATATTAGATAACAAAAGGGTAAAAGACTTCCTACTTATCTTAAAAAAAAAA]
[+] EMBL AK071125 [GCATCCCCAACCCCAACCCCTCCCCGCCTTGCGCCGCCGCCGCCGCCGCCACCGGCGCCGGCGATCCTCCGATGGGCGCCTCGGCCTCCGTCCTCTCCCTTCCCACGGCGGCCGCCATCCCGGGAGCCGCCACCGCTATAGCTGGCGCCGCGGGCTGCTTCGCCCTCGGCTACTTCCTCGCCCTCAGCCGCTTCCCCCGCCAGGTCGTCGCTGCCTCCCCCGCTTCCGGGGAGACCTCGGACGAGGATTCCGAGGAGGATTCGGAAGAAGATGATGATGACGAAAACTCCGGCCGCAGCCGGGCGGCGAAGCGGGCGCCCAAGCGCGCCGGGCTCCGGCTGCTGTTCTGGGCGCGCAACGTGGTGACCAAGTCCGACTCGGCGAAGGAGGCCGAGAGGGCCAAGGCACGGACCGCGGCTAGCCCCCTGGAGGTCGAGAATCTCGCTGAGATTATAGAGGATTTCAAGATGGTGCTGGTTGTGAGGAATGATTTGAAGATGGGGAAGGGGAAGATTGCCGCGCAATGCAGCCATGCAACGTTGGGTCTGTTTAAAAAACTCCAACAGAGAGCTCCAAAATCATTAAGAAGGTGGGAGAGGTGTGGTCAAGTTAAGGTGGTCGTGAAAATTGAAAGCGAGGAAGATATGCTTGTTTTACAAGGAAGAGCAAAGTCTTTGAATATCCCAACACACATAACTATTGATGCTGGAAGAACACAGATCGCACCAAATTCAAGAACAGTCATGGCTATTCTTGGGCCAGCTGACATGGTCGATGATGTCACCGGTGGTCTGAAGCTTCTATAAATTCTTGTTCTCGGTATCCTCAGACATAGGAATTTGAAGACAAACGCTTAAATTTGACAAACCACATTGGCTGCTGAAGAACGAACCCTGAAACTCATCGGCTCACTCAATCTTGTTGTTCGAGTATTTACCAGTGAAGAGGCTTAATTTCACTTTTACTTGTATGAACTGTCTTCGGAGCAATGGTTTTTTCTTTCTTCAGTTTTCCACTCTGCATTTGTTGCTGTGGACGTCTGAACTCTTAAATTTTTCTGTAACATATTAGATAACAAAAGGGTAAAAGACTTCC ]
[+] EMBL CA757102 [ ATGCTGGAAGAACACAGATCGCACCAAATTCAAGAACAGTCATGGCTATTCTTGGGCCAGCTGACATGGTCGATGATGTCACCGGTGGTCTGAAGCTTCTATAAATTCTTGTTCTCGGTATCCTCAGACATAGGAATTTGAAGACAAACGCTTAAATTTGACAAACCACATTGGCTGCTGAAGAACGAACCCTGAAACTCATCGGCTCACTCAATCTTGTTGTTCGAGTATTTACCAGTGAGGAGGCTTAATTTCACTTTTACTTGTATGAACTGTCTTCGGAGCAATGATTTTTTCTTTTTTCAGTTTTCCAATGTGCATTTGTTGCTGAGGACGTCTGAACTCTTGAATTTTTCTGTAACATATTAGATAACAAAAGGGTAAAAGACTTCCTACTTATCTTAAAAAAA ]
[+] EMBL OSR00991A [ ACCCTGAAACTCATCGGCTCACTCAATCTTGTTGTTCGAGTATTTACCAGTGAAGAGGCTTAATTTCACTTTTACTTGTATGAACTGTCTTCGGAGCAATGG TTTTTCTTTCTTCAGTTTTCCACTCTGCATTTGTTGCTGTGGACGTCTGAACTCTTAAATTTTTCTGTAACATATTAGATAACAAAAGGGTAAAAGACTTCCTACTTATCTTAAAAAAAAAA]
consensusID : consensus_6861#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 255 fasta sequence
[GGAGNTCGCCCCACGGCNTCCGGAAGAACGACCCNTGAAACTCATCGGCTNACTCAATCTTGTTGTTCGANTATTTACCANTGAAGAGGNTTAATTTCACTTTTACTTGTATGAACTGTCTTCGGAGCAATGGTTTTTCTTTCTTCAGTTTTCCACTCTGCATTTGTTGCTGTGGACGTCTGAACTCTTAAATTTTTCTGTAACATATTAGATAACAAAAGGGTAAAAGACTTCCTACTTATCTTAAAAAAAAAA]
[+] EMBL AU031641 [GGAGNTCGCCCCACGGCNTCCGGAAGAACGACCCNTGAAACTCATCGGCTNACTCAATCTTGTTGTTCGANTATTTACCANTGAAGAGGNTTAATTTCACTTTTACTTGTATGAACTGTCTTCGGAGCAATGGTTTTTCTTTCTTCAGTTTTCCACTCTGCATTTGTTGCTGTGGACGTCTGAACTCTTAAATTTTTCTGTAACATATTAGATAACAAAAGGGTAAAAGACTTCCTACTTATCTTAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6861#0 GCATCCCCAACCCCAACCCCTCCCCGCCTTGCGCCGCCGCCGCCGCCGCCACCGGCGCCG 60
consensus_6861#1 ------------------------------------------------------------
consensus_6861#0 GCGATCCTCCGATGGGCGCCTCGGCCTCCGTCCTCTCCCTTCCCACGGCGGCCGCCATCC 120
consensus_6861#1 ------------------------------------------------------------
consensus_6861#0 CGGGAGCCGCCACCGCTATAGCTGGCGCCGCGGGCTGCTTCGCCCTCGGCTACTTCCTCG 180
consensus_6861#1 ------------------------------------------------------------
consensus_6861#0 CCCTCAGCCGCTTCCCCCGCCAGGTCGTCGCTGCCTCCCCCGCTTCCGGGGAGACCTCGG 240
consensus_6861#1 ------------------------------------------------------------
consensus_6861#0 ACGAGGATTCCGAGGAGGATTCGGAAGAAGATGATGATGACGAAAACTCCGGCCGCAGCC 300
consensus_6861#1 ------------------------------------------------------------
consensus_6861#0 GGGCGGCGAAGCGGGCGCCCAAGCGCGCCGGGCTCCGGCTGCTGTTCTGGGCGCGCAACG 360
consensus_6861#1 ------------------------------------------------------------
consensus_6861#0 TGGTGACCAAGTCCGACTCGGCGAAGGAGGCCGAGAGGGCCAAGGCACGGACCGCGGCTA 420
consensus_6861#1 ------------------------------------------------------------
consensus_6861#0 GCCCCCTGGAGGTCGAGAATCTCGCTGAGATTATAGAGGATTTCAAGATGGTGCTGGTTG 480
consensus_6861#1 ------------------------------------------------------------
consensus_6861#0 TGAGGAATGATTTGAAGATGGGGAAGGGGAAGATTGCCGCGCAATGCAGCCATGCAACGT 540
consensus_6861#1 ------------------------------------------------------------
consensus_6861#0 TGGGTCTGTTTAAAAAACTCCAACAGAGAGCTCCAAAATCATTAAGAAGGTGGGAGAGGT 600
consensus_6861#1 ------------------------------------------------------------
consensus_6861#0 GTGGTCAAGTTAAGGTGGTCGTGAAAATTGAAAGCGAGGAAGATATGCTTGTTTTACAAG 660
consensus_6861#1 ------------------------------------------------------------
consensus_6861#0 GAAGAGCAAAGTCTTTGAATATCCCAACACACATAACTATTGATGCTGGAAGAACACAGA 720
consensus_6861#1 ------------------------------------------------------------
consensus_6861#0 TCGCACCAAATTCAAGAACAGTCATGGCTATTCTTGGGCCAGCTGACATGGTCGATGATG 780
consensus_6861#1 ------------------------------------------------------------
consensus_6861#0 TCACCGGTGGTCTGAAGCTTCTATAAATTCTTGTTCTCGGTATCCTCAGACATAGGAATT 840
consensus_6861#1 ------------------------------------------------------------
consensus_6861#0 TGAAGACAAACGCTTAAATTTGACAAACCACATTGGCTGCTGAAGAACGAACCCTGAAAC 900
consensus_6861#1 -------------------GGAGNTCGCCCCACGGCNTCCGGAAGAACGACCCNTGAAAC 41
** ** * * * ********* ** ******
consensus_6861#0 TCATCGGCTCACTCAATCTTGTTGTTCGAGTATTTACCAGTGAAGAGGCTTAATTTCACT 960
consensus_6861#1 TCATCGGCTNACTCAATCTTGTTGTTCGANTATTTACCANTGAAGAGGNTTAATTTCACT 101
********* ******************* ********* ******** ***********
consensus_6861#0 TTTACTTGTATGAACTGTCTTCGGAGCAATGGTTTTTTCTTTCTTCAGTTTTCCACTCTG 1020
consensus_6861#1 TTTACTTGTATGAACTGTCTTCGGAGCAATGGTTTTT-CTTTCTTCAGTTTTCCACTCTG 160
************************************* **********************
consensus_6861#0 CATTTGTTGCTGTGGACGTCTGAACTCTTAAATTTTTCTGTAACATATTAGATAACAAAA 1080
consensus_6861#1 CATTTGTTGCTGTGGACGTCTGAACTCTTAAATTTTTCTGTAACATATTAGATAACAAAA 220
************************************************************
consensus_6861#0 GGGTAAAAGACTTCCTACTTATCTTAAAAAAAAAA 1115
consensus_6861#1 GGGTAAAAGACTTCCTACTTATCTTAAAAAAAAAA 255
***********************************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||