These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_689#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 338 fasta sequence [CCTTGTGGGCGTGCTGCATCTTCCTCTCTACTCCGCCACCGCGACATCGAGCATCACCATCCCGCCGTCTCTCGGTGTTTGATAATTCATGGTATAGGAATTCATCCGGAAGCACCTTGACAATAAGCCCATCGTCGAACTGCTATAGTGTGCAACTGCAGTGCTTATATTTATCTTTTCTTAGGGCAAAAGATAATCTCTGACATTGAAGTACTATGTTGCATTCTTACTTTACTGTAATTTAAACCATGCTAATTTATATCATAACAAAATTTGAACCAGACAATAAGTCATTGAGCTNCTCAGTATCTAATCGGTTTNGGCACCAAACTGAGAAG] [+] EMBL C28692 [CCTTGTGGGCGTGCTGCATCTTCCTCTCTACTCCGCCACCGCGACATCGAGCATCACCATCCCGCCGTCTCTCGGTGTTTGATAATTCATGGTATAGGAATTCATCCGGAAGCACCTTGACAATAAGCCCATCGTCGAACTGCTATAGTGTGCAACTGCAGTGCTTATATTTATCTTTTCTTAGGGCAAAAGATAATCTCTGACATTGAAGTACTATGTTGCATTCTTACTTTACTGTAATTTAAACCATGCTAATTTATATCATAACAAAATTTGAACCAGACAATAAGTCATTGAGCTNCTCAGTATCTAATCGGTTTNGGCACCAAACTGAGAAG] consensusID : consensus_689#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 117 fasta sequence [GATAATCTCTGACATTGAAATACTATGTTGCATTCTTACTTTACTGTAATTTAAACCATGCTAATTTATATCATAACAAAATTTGAACCAGACAATAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CA765524 [GATAATCTCTGACATTGAAATACTATGTTGCATTCTTACTTTACTGTAATTTAAACCATGCTAATTTATATCATAACAAAATTTGAACCAGACAATAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_689#0 CCTTGTGGGCGTGCTGCATCTTCCTCTCTACTCCGCCACCGCGACATCGAGCATCACCAT 60 consensus_689#1 ------------------------------------------------------------ consensus_689#0 CCCGCCGTCTCTCGGTGTTTGATAATTCATGGTATAGGAATTCATCCGGAAGCACCTTGA 120 consensus_689#1 ------------------------------------------------------------ consensus_689#0 CAATAAGCCCATCGTCGAACTGCTATAGTGTGCAACTGCAGTGCTTATATTTATCTTTTC 180 consensus_689#1 ------------------------------------------------------------ consensus_689#0 TTAGGGCAAAAGATAATCTCTGACATTGAAGTACTATGTTGCATTCTTACTTTACTGTAA 240 consensus_689#1 -----------GATAATCTCTGACATTGAAATACTATGTTGCATTCTTACTTTACTGTAA 49 ******************* ***************************** consensus_689#0 TTTAAACCATGCTAATTTATATCATAACAAAATTTGAACCAGACAATAAGTCATTGAGCT 300 consensus_689#1 TTTAAACCATGCTAATTTATATCATAACAAAATTTGAACCAGACAATAAAAAAAAAAAAA 109 ************************************************* * * consensus_689#0 NCTCAGTATCTAATCGGTTTNGGCACCAAACTGAGAAG 338 consensus_689#1 AAAAAAAA------------------------------ 117 * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||