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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6909#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1623 fasta sequence
[GTGGTGGTGGGAACAAGAAGGGGAGGAGAGACTCGCCGTCGCCGCCGCTCGAGACCCCCCCGCGCGGCGAGTTGCCGTCGACGTCGTCGTCCTCCTCCTCGCGCGCCACCAAGCGTCACCGCGTGGCGGGCATGGCGGACCGCTACTTCCCCAACGACCTCCCGGACTTCGTCGCCGAGGCCCCCGACGGCGGCCGCGGCTTGCTGTCGCTCCCTTACTCCAGCCTCTCCGAAAGGCTCCTCCGCGCCGCGCTCCGGATCAAGGACAAGGTCATGGAGGAGACGTGGACCAGGGCGCGGCGACAGGTGACGGACTACACGCTCTACACGGGCGCGCTCGGCACGGCGCTCCTGCTGTTCAAGTCCTTCCAGGTCACCGGCAACCGCGCCGACCTCGCCCTCGCCGGCGACATCGTCAAGGAGTGCGACGCCGCGTCGCGTGGCCTGCCACGCAGGTTCTTGACATTCATCTGTGGGAGGGCTGGGGTTTGCGCTCTTGGTGCAGTGATTGCAAAACATTGCAATGACCAGCTGCTACTCACACACTACCTGAGCTCATTTGATGAGATAATAGTCACTGAGAAAGTTCCCAATGAGTTGTTATATGGAAGAGCAGGGTATTTGTGGGCTTGCTTGTTCTTGAATACGCATCTCGGCGAGAAGACAATTCCCCATGAGCACATTACTTCTGTGGCAAAGGACATCATCGATGAGGGAAGAAAGCTGGCTAAAAAGGGGAACTGCCCCCTGATGTATGAATGGCATGGAAAGAAGTACTGGGGTGCTGCTCATGGGCTTGCTGGCATTATGCATGTCCTCATGCACACTGAACTCAAGCTAGATGAGAAGGATGATGTTAAGAACACTCTGCTATACATGATCAGGAACAGGTATCCTACTGGCAACTATCCATCGAGTGAAGGCAGTGAATCTGACCGCTTGGTGCATTGGTGCCATGGTGCCCCTGGTGTTGCTCTTACACTCGCTAAAGCTTATCAGGTCTTCCATGATGAACATTTCAAGCAGACGGCTGCAGAGGCTGCAGAAGTTGTCTGGAACCGGGGACTTCTCAAGAGAGTTGGAATATGCCATGGTGTAAGTGGGAACGCCTATGTATTTCTCTCACTCTACCGGCTAACTGGCAATGTTGAGTACCTGTACCGGGCTAAGGCTTTTGCTTGCTTTCTGCTTGAGAAAGCTGATCAGTTGATTGCTGATGGGGCCATGCATGGGGGTGATCACCCATTTTCATTGTTTG-AAGGGA-GGGCTGGGATGGCTTA-CCT-CCTTCTAGACATGGTTAGCCCATCAGAATCAAAGTTCCCGGCCTATGAGCTTTGAAGGGCATCATAAATATATGTATCCTGTTAGGATCAAATGCTCAGTGATCCATCCATCCAAAGTAGCTGTATTGTGTTTTCTTGCGTACCCAGTAATGTGTGCATTGTAATTTGTTGTCTTTGTAAAGTTCAGTATCCAGATGGTGCAAGCTTGAACCTTTGTAAAATACATGTTTGAGGGAGTTCCTTGAAATATGATAATATTTATGTTGGTTGTTGCCTCTATTTGTTTACTGAATAAAATATAGTTTTGCCNCCATANAAAAAAAAAAAAAAAAANAANANAN]
[+] EMBL AK073596 [GTGGTGGTGGGAACAAGAAGGGGAGGAGAGACTCGCCGTCGCCGCCGCTCGAGACCCCCCCGCGCGGCGAGTTGCCGTCGACGTCGTCGTCCTCCTCCTCGCGCGCCACCAAGCGTCACCGCGTGGCGGGCATGGCGGACCGCTACTTCCCCAACGACCTCCCGGACTTCGTCGCCGAGGCCCCCGACGGCGGCCGCGGCTTGCTGTCGCTCCCTTACTCCAGCCTCTCCGAAAGGCTCCTCCGCGCCGCGCTCCGGATCAAGGACAAGGTCATGGAGGAGACGTGGACCAGGGCGCGGCGACAGGTGACGGACTACACGCTCTACACGGGCGCGCTCGGCACGGCGCTCCTGCTGTTCAAGTCCTTCCAGGTCACCGGCAACCGCGCCGACCTCGCCCTCGCCGGCGACATCGTCAAGGAGTGCGACGCCGCGTCGCGTGGCCTGCCACGCAGGTTCTTGACATTCATCTGTGGGAGGGCTGGGGTTTGCGCTCTTGGTGCAGTGATTGCAAAACATTGCAATGACCAGCTGCTACTCACACACTACCTGAGCTCATTTGATGAGATAATAGTCACTGAGAAAGTTCCCAATGAGTTGTTATATGGAAGAGCAGGGTATTTGTGGGCTTGCTTGTTCTTGAATACGCATCTCGGCGAGAAGACAATTCCCCATGAGCACATTACTTCTGTGGCAAAGGACATCATCGATGAGGGAAGAAAGCTGGCTAAAAAGGGGAACTGCCCCCTGATGTATGAATGGCATGGAAAGAAGTACTGGGGTGCTGCTCATGGGCTTGCTGGCATTATGCATGTCCTCATGCACACTGAACTCAAGCTAGATGAGAAGGATGATGTTAAGAACACTCTGCTATACATGATCAGGAACAGGTATCCTACTGGCAACTATCCATCGAGTGAAGGCAGTGAATCTGACCGCTTGGTGCATTGGTGCCATGGTGCCCCTGGTGTTGCTCTTACACTCGCTAAAGCTTATCAGGTCTTCCATGATGAACATTTCAAGCAGACGGCTGCAGAGGCTGCAGAAGTTGTCTGGAACCGGGGACTTCTCAAGAGAGTTGGAATATGCCATGGTGTAAGTGGGAACGCCTATGTATTTCTCTCACTCTACCGGCTAACTGGCAATGTTGAGTACCTGTACCGGGCTAAGGCTTTTGCTTGCTTTCTGCTTGAGAAAGCTGATCAGTTGATTGCTGATGGGGCCATGCATGGGGGTGATCACCCATTTTCATTGTTTG AAGGGA GGGCTGGGATGGCTTA CCT CCTTCTAGACATGGTTAGCCCATCAGAATCAAAGTTCCCGGCCTATGAGCTTTGAAGGGCATCATAAATATATGTATCCTGTTAGGATCAAATGCTCAGTGATCCATCCATCCAAAGTAGCTGTATTGTGTTTTCTTGCGTACCCAGTAATGTGTGCATTGTAATTTGTTGTCTTTGTAAAGTTCAGTATCCAGATGGTGCAAGCTTGAACCTTTGTAAAATACATGTTTGAGGGAGTTCCTTGAAATATGATAATATTTATGTTGGTTGTTGCCTCTATTTGTTTACTGAATAAAATATAG ]
[+] EMBL AK064225 [ GGGAACAAGAAGGGGAGGAGAGACTCGCCGTCGCCGCCGCTCGAGACCCCCCCGCGCGGCGAGTTGCCGTCGACGTCGTCGTCCTCCTCCTCGCGCGCCACCAAGCGTCACCGCGTGGCGGGCATGGCGGACCGCTACTTCCCCAACGACCTCCCGGACTTCGTCGCCGAGGCCCCCGACGGCGGCCGCGGCTTGCTGTCGCTCCCTTACTCCAGCCTCTCCGAAAGGCTCCTCCGCGCCGCGCTCCGGATCAAGGACAAGGTCATGGAGGAGACGTGGACCAGGGCGCGGCGACAGGTGACGGACTACACGCTCTACACGGGCGCGCTCGGCACGGCGCTCCTGCTGTTCAAGTCCTTCCAGGTCACCGGCAACCGCGCCGACCTCGCCCTCGCCGGCGACATCGTCAAGGAGTGCGACGCCGCGTCGCGTGGCCTGCC GTTCTTGACATTCATCTGTGGGAGGGCTGGGGTTTGCGCTCTTGGTGCAGTGATTGCAAAACATTGCAATGACCAGCTGCTACTCACACACTACCTGAGCTCATTTGATGAGATAATAGTCACTGAGAAAGTTCCCAATGAGTTGTTATATGGAAGAGCAGGGTATTTGTGGGCTTGCTTGTTCTTGAATACGCATCTCGGCGAGAAGACAATTCCCCATGAGCACATTACTTCTGTGGCAAAGGACATCATCGATGAGGGAAGAAAGCTGGCTAAAAAGGGGAACTGCCCCCTGATGTATGAATGGCATGGAAAGAAGTACTGGGGTGCTGCTCATGGGCTTGCTGGCATTATGCATGTCCTCATGCACACTGAACTCAAGCTAGATGAGAAGGATGATGTTAAGAACACTCTGCTATACATGATCAGGAACAGGTATCCTACTGGCAACTATCCATCGAGTGAAGGCAGTGAATCTGACCGCTTGGTGCATTGGTGCCATGGTGCCCCTGGTGTTGCTCTTACACTCGCTAAAGCTTATCAGGTCTTCCATGATGAACATTTCAAGCAGACGGCTGCAGAGGCTGCAGAAGTTGTCTGGAACCGGGGACTTCTCAAGAGAGTTGGAATATGCCATGGTGTAAGTGGGAACGCCTATGTATTTCTCTCACTCTACCGGCTAACTGGCAATGTTGAGTACCTGTACCGGGCTAAGGCTTTTGCTTGCTTTCTGCTTGAGAAAGCTGATCAGTTGATTGCTGATGGGGTCATGCATGGGGGTGATCACCCATTTTCATTGTTTG AAGGGA GGGCTGGGATGGCTTA CCT CCTTCTAGACATGGTTAGCCCATCAGAATCAAAGTTCCCGGCCTATGAGCTTTGAAGGGCATCATAAATATATGTATCCTGTTAGGATCAAATGCTCAGTGATCCATCCATCCAAAGTAGCTGTATTGTGTTTTCTTGCGTACCCAGTAATGTGTGCATTGTAATTTGTTGTCTTTGTAAAGTTCAGTATCCAGATGGTGCAAGCTTGAACCTTTGTAAAATACATGTTTGAGGGAGTTCCTTGAAATATGATAATATTTATGTT ]
[+] EMBL AU033053 [ atnGGGGTTGAACACCCATTTCCANTGTTTGAAAGGNANGGNCTGGGATGGCTTACCCTCCCTTCTAGACATGGTTANCCCATCAGAATCAAAGTTCCCGGCCTATGANCTTTGAAGGGCNTCATAAATATATGTANCCTGTTAGGANCAAATGCTCAGTGANCCANCCANCCAAAGTANCTGTATTGTGTTTTCTTGCGTACCCAGTAATGTGTGCATTGTAANTTGTTGTCTTTGTAAAGTTCAGTATCCAGATGGTGCAANCTTGAACCTTTGTAAAANACATGTTTGAGGGAGTTCCTTGAAATATGATAATATTTATGTTGGTTGTTGCCTCTATTTGTTTACTGAATNAAATATAGTTTTGCCNCCATANAAAAAAAAAAAAAAAAANAANANAN]
consensusID : consensus_6909#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 341 fasta sequence
[GCCTCCTTGGTGTTAAATTAAGACGCAGGTTCTTGACATTCATCTGTGGGAGGGCTGGGGTTTGCGCTCTTGGTGCAGTGATTGCAAAACATTGCAATGACCAGCTGCTACTCACACACTACCTGAGCTCATTTGATGAGATAATAGTCACTGAGAAAGTTCCCAATGAGTTGTTATATGGAAGAGCAGGGTATTTGTGGGCTTGCTTGTTCTTGAATACGCATCTCGGCGAGAAGACAATTCCCCATGAGCACATTACTTCTGTGGGCAAAGGACATCATCGATGAGGGAAGGAAAGCTGGCTTAAAAAGGGGGAACTGCCCCCCTGATGTATTGAATGG]
[+] EMBL OSS10767A [GCCTCCTTGGTGTTAAATTAAGACGCAGGTTCTTGACATTCATCTGTGGGAGGGCTGGGGTTTGCGCTCTTGGTGCAGTGATTGCAAAACATTGCAATGACCAGCTGCTACTCACACACTACCTGAGCTCATTTGATGAGATAATAGTCACTGAGAAAGTTCCCAATGAGTTGTTATATGGAAGAGCAGGGTATTTGTGGGCTTGCTTGTTCTTGAATACGCATCTCGGCGAGAAGACAATTCCCCATGAGCACATTACTTCTGTGGGCAAAGGACATCATCGATGAGGGAAGGAAAGCTGGCTTAAAAAGGGGGAACTGCCCCCCTGATGTATTGAATGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6909#0 GTGGTGGTGGGAACAAGAAGGGGAGGAGAGACTCGCCGTCGCCGCCGCTCGAGACCCCCC 60
consensus_6909#1 ------------------------------------------------------------
consensus_6909#0 CGCGCGGCGAGTTGCCGTCGACGTCGTCGTCCTCCTCCTCGCGCGCCACCAAGCGTCACC 120
consensus_6909#1 ------------------------------------------------------------
consensus_6909#0 GCGTGGCGGGCATGGCGGACCGCTACTTCCCCAACGACCTCCCGGACTTCGTCGCCGAGG 180
consensus_6909#1 ------------------------------------------------------------
consensus_6909#0 CCCCCGACGGCGGCCGCGGCTTGCTGTCGCTCCCTTACTCCAGCCTCTCCGAAAGGCTCC 240
consensus_6909#1 ------------------------------------------------------------
consensus_6909#0 TCCGCGCCGCGCTCCGGATCAAGGACAAGGTCATGGAGGAGACGTGGACCAGGGCGCGGC 300
consensus_6909#1 ------------------------------------------------------------
consensus_6909#0 GACAGGTGACGGACTACACGCTCTACACGGGCGCGCTCGGCACGGCGCTCCTGCTGTTCA 360
consensus_6909#1 ------------------------------------------------------------
consensus_6909#0 AGTCCTTCCAGGTCACCGGCAACCGCGCCGACCTCGCCCTCGCCGGCGACATCGTCAAGG 420
consensus_6909#1 ------------------------------------------------------------
consensus_6909#0 AGTGCGACGCCGCGTCGCGTGGCCTGCCACGCAGGTTCTTGACATTCATCTGTGGGAGGG 480
consensus_6909#1 -----GCCTCCTTGGTGT-TAAATTAAGACGCAGGTTCTTGACATTCATCTGTGGGAGGG 54
* * ** * * * * ********************************
consensus_6909#0 CTGGGGTTTGCGCTCTTGGTGCAGTGATTGCAAAACATTGCAATGACCAGCTGCTACTCA 540
consensus_6909#1 CTGGGGTTTGCGCTCTTGGTGCAGTGATTGCAAAACATTGCAATGACCAGCTGCTACTCA 114
************************************************************
consensus_6909#0 CACACTACCTGAGCTCATTTGATGAGATAATAGTCACTGAGAAAGTTCCCAATGAGTTGT 600
consensus_6909#1 CACACTACCTGAGCTCATTTGATGAGATAATAGTCACTGAGAAAGTTCCCAATGAGTTGT 174
************************************************************
consensus_6909#0 TATATGGAAGAGCAGGGTATTTGTGGGCTTGCTTGTTCTTGAATACGCATCTCGGCGAGA 660
consensus_6909#1 TATATGGAAGAGCAGGGTATTTGTGGGCTTGCTTGTTCTTGAATACGCATCTCGGCGAGA 234
************************************************************
consensus_6909#0 AGACAATTCCCCATGAGCACATTACTTCTGTGG-CAAAGGACATCATCGATGAGGGAAG- 718
consensus_6909#1 AGACAATTCCCCATGAGCACATTACTTCTGTGGGCAAAGGACATCATCGATGAGGGAAGG 294
********************************* *************************
consensus_6909#0 AAAGCTGGCT--AAAAAGGGGAACTGCCCCC-TGATGTAT-GAATGGCATGGAAAGAAGT 774
consensus_6909#1 AAAGCTGGCTTAAAAAGGGGGAACTGCCCCCCTGATGTATTGAATGG------------- 341
********** **** ************** ******** ******
consensus_6909#0 ACTGGGGTGCTGCTCATGGGCTTGCTGGCATTATGCATGTCCTCATGCACACTGAACTCA 834
consensus_6909#1 ------------------------------------------------------------
consensus_6909#0 AGCTAGATGAGAAGGATGATGTTAAGAACACTCTGCTATACATGATCAGGAACAGGTATC 894
consensus_6909#1 ------------------------------------------------------------
consensus_6909#0 CTACTGGCAACTATCCATCGAGTGAAGGCAGTGAATCTGACCGCTTGGTGCATTGGTGCC 954
consensus_6909#1 ------------------------------------------------------------
consensus_6909#0 ATGGTGCCCCTGGTGTTGCTCTTACACTCGCTAAAGCTTATCAGGTCTTCCATGATGAAC 1014
consensus_6909#1 ------------------------------------------------------------
consensus_6909#0 ATTTCAAGCAGACGGCTGCAGAGGCTGCAGAAGTTGTCTGGAACCGGGGACTTCTCAAGA 1074
consensus_6909#1 ------------------------------------------------------------
consensus_6909#0 GAGTTGGAATATGCCATGGTGTAAGTGGGAACGCCTATGTATTTCTCTCACTCTACCGGC 1134
consensus_6909#1 ------------------------------------------------------------
consensus_6909#0 TAACTGGCAATGTTGAGTACCTGTACCGGGCTAAGGCTTTTGCTTGCTTTCTGCTTGAGA 1194
consensus_6909#1 ------------------------------------------------------------
consensus_6909#0 AAGCTGATCAGTTGATTGCTGATGGGGCCATGCATGGGGGTGATCACCCATTTTCATTGT 1254
consensus_6909#1 ------------------------------------------------------------
consensus_6909#0 TTGAAGGGAGGGCTGGGATGGCTTACCTCCTTCTAGACATGGTTAGCCCATCAGAATCAA 1314
consensus_6909#1 ------------------------------------------------------------
consensus_6909#0 AGTTCCCGGCCTATGAGCTTTGAAGGGCATCATAAATATATGTATCCTGTTAGGATCAAA 1374
consensus_6909#1 ------------------------------------------------------------
consensus_6909#0 TGCTCAGTGATCCATCCATCCAAAGTAGCTGTATTGTGTTTTCTTGCGTACCCAGTAATG 1434
consensus_6909#1 ------------------------------------------------------------
consensus_6909#0 TGTGCATTGTAATTTGTTGTCTTTGTAAAGTTCAGTATCCAGATGGTGCAAGCTTGAACC 1494
consensus_6909#1 ------------------------------------------------------------
consensus_6909#0 TTTGTAAAATACATGTTTGAGGGAGTTCCTTGAAATATGATAATATTTATGTTGGTTGTT 1554
consensus_6909#1 ------------------------------------------------------------
consensus_6909#0 GCCTCTATTTGTTTACTGAATAAAATATAGTTTTGCCNCCATANAAAAAAAAAAAAAAAA 1614
consensus_6909#1 ------------------------------------------------------------
consensus_6909#0 ANAANANAN 1623
consensus_6909#1 ---------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||