These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_692#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 322 fasta sequence [CTTGTCCGAAAGTTCAGAAATCACTCTACTTTTNTTGTNAGTTTCGCTTCCGGCCATGGCGTTGAACCCGCTCTTCACCGTNACGTTCGACGTGAGCAGCGGCGACAACTACGGCGACTTCATCGCCGGCATCCGCAGCAGGGTGGCCAACCCGAGGCACTTCTCCCGCAACCGGCCCGTCCTGCCGCCGGTGGAGCCGNCGCCGCCGCCGCGCCGCTGGTTCCACGTCGTGCTCCGGGCGTCGCGACCGCCGCGCTCACGCTCGCAACGNGCGCCGACAACCTCTACCTGGAGGGATTCCGGAGCAGCGACGGGAGGTGGT] [+] EMBL C73224 [CTTGTCCGAAAGTTCAGAAATCACTCTACTTTTNTTGTNAGTTTCGCTTCCGGCCATGGCGTTGAACCCGCTCTTCACCGTNACGTTCGACGTGAGCAGCGGCGACAACTACGGCGACTTCATCGCCGGCATCCGCAGCAGGGTGGCCAACCCGAGGCACTTCTCCCGCAACCGGCCCGTCCTGCCGCCGGTGGAGCCGNCGCCGCCGCCGCGCCGCTGGTTCCACGTCGTGCTCCGGGCGTCGCGACCGCCGCGCTCACGCTCGCAACGNGCGCCGACAACCTCTACCTGGAGGGATTCCGGAGCAGCGACGGGAGGTGGT] consensusID : consensus_692#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 304 fasta sequence [CAAAGCAAAAATTCCATTTTGTTTTGACTATTTCGCTTCCGGCCATGGCGTTGAACCCGCTCTTCACCGTGACGTTCGACGTGAGCAGCGGCGACAACTACGGCGACTTCATCGCCGGCATCCGCAGCAGGGTGGCCAACCCGAGGCACTTCTCCCGCAACCGCCCCGTCCTGCCGCCGGTGGAGCCGCCGCCGCCGCCGCGCCGCTGGTTCCACGTCGTGCTCCGGGCGTCGCCGACAACTACGGCGACTTCATCGCCGGCATCCGCAGCAGGGTGGCCGGTCCTCTCGGCGGCCATGCTCGG] [-] EMBL BI306712 [CAAAGCAAAAATTCCATTTTGTTTTGACTATTTCGCTTCCGGCCATGGCGTTGAACCCGCTCTTCACCGTGACGTTCGACGTGAGCAGCGGCGACAACTACGGCGACTTCATCGCCGGCATCCGCAGCAGGGTGGCCAACCCGAGGCACTTCTCCCGCAACCGCCCCGTCCTGCCGCCGGTGGAGCCGCCGCCGCCGCCGCGCCGCTGGTTCCACGTCGTGCTCCGGGCGTCGCCGACAACTACGGCGACTTCATCGCCGGCATCCGCAGCAGGGTGGCCGGTCCTCTCGGCGGCCATGCTCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_692#0 CTTGTCCGAAAGTTCAGAAATCACTCTACTTT-TNTTGTNAGTTTCGCTTCCGGCCATGG 59 consensus_692#1 ------------CAAAGCAAAAATTCCATTTTGTTTTGACTATTTCGCTTCCGGCCATGG 48 ** ** * ** * *** * *** ****************** consensus_692#0 CGTTGAACCCGCTCTTCACCGTNACGTTCGACGTGAGCAGCGGCGACAACTACGGCGACT 119 consensus_692#1 CGTTGAACCCGCTCTTCACCGTGACGTTCGACGTGAGCAGCGGCGACAACTACGGCGACT 108 ********************** ************************************* consensus_692#0 TCATCGCCGGCATCCGCAGCAGGGTGGCCAACCCGAGGCACTTCTCCCGCAACCGGCCCG 179 consensus_692#1 TCATCGCCGGCATCCGCAGCAGGGTGGCCAACCCGAGGCACTTCTCCCGCAACCGCCCCG 168 ******************************************************* **** consensus_692#0 TCCTGCCGCCGGTGGAGCCGNCGCCGCCGCCGCGCCGCTGGTTCCACGTCGTGCTCCGGG 239 consensus_692#1 TCCTGCCGCCGGTGGAGCCGCCGCCGCCGCCGCGCCGCTGGTTCCACGTCGTGCTCCGGG 228 ******************** *************************************** consensus_692#0 CGTCGC-GACCGCCGCGCTCACGCTCGCAACGNGCGCCGACAACCTCTACCTGGAGGGAT 298 consensus_692#1 CGTCGCCGACAACTACGGCGAC-TTCATCGCCGGCATCCGCAGCA---GGGTGGCCGGTC 284 ****** *** * ** ** ** * ** * ** * *** ** consensus_692#0 TCCGGAGCAGCGACGGGAGGTGGT 322 consensus_692#1 CTCTCGGCGGCCATGCTCGG---- 304 * ** ** * * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||