These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6926#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1397 fasta sequence [TTTTTTTTTTTTTTTTATTCAAAATTTCTATGGTTATCCGATATCACCTTTTGTATATGAGATAAAAAAAAATTGTAAACTACTCCAAGGCTTCCACCAGGATAGGGGTTTCTAGTTTACATTTTTGGAGGAATATCCAATGAAAACCATCGAATGAATGAAAACCGAAACTGAATTTTTTTCTAAATTCATGGAAAATTTACTAGAGATAAGTATAGGTGTGAACTACATTTCCACCAAATCTCAAGTTCAAATCCAGCTTCCTACTATTCACCAAAATTTTGTCTTCTTTTCCTTCCAAATAAAGTTGAGTTTAGACAGAGAGATTTGAAGGGAATGTAGTCCATGCTTACACATATTTCTAGTAATTTTTTCAATAATTTAGAAAACTTTTAGTTCCGATTTTCATAGGTTTTCGCTTTTTCGCCACAGATATCCCTGTTTGTTTTCTCAACAAGGGATACATCTTACAAACCTAAAAGAAGGGAATAAAGGTAGCTATGAATTCACTACGGAGTGGAAAAAAAGCATCGATTTGATTTGGAACCAAAAAAAAAAAGCAATAGCGCCGCCCTGTTGCCAGGTTCTTAACAGAAATTTCACTTGAGGAAAGTACAACCCAAGAACAAGAAAACATAAGCCACAAGAGAAGAAAGGAGCTCGATGGACCAAGTAGGTGGGATGGCAAATGTTGGAATCACTGGGACAAGCAAAGATCCCACAATCCAGCCACCCACAAAAACTCCAAACCCTGTCATAGACG-CCCTGGAAAGATTTTTCATCTTTTCATTGAGGAAATATATGCATGAGACGAGTGATAGTGCAAGCTGGAAAGTAGGCCCAGTCTCAGCGGACGTTACAATGCTCCACCCAGCAATAAAAGCAAAAAGAGCAAGTCTTCTTGAAATAATCTCCGCTGATGGCACCTCAAAGAACCCAAGCATTGCCTTAAACCATGATGGGGATTCCTCGACTTGCTTTTGTATTTTGCTTTTCAGATTAATTTTGGATTTCTTACGGTGTGAGTAGCTTTTCATTATTATTTTTTCATAAGCACCTTCAATAGCCTCTTCGGTCTCTTCATGCCCAGCATATTGCTTAAGAAGAAAATTCCTTGCACTCCTGATCTCTTCTTCGGATGCATCATGATCAACACCAAGAATCTTGTAGGGGTCCCATGCTTGCTGTCTTGGGAACAACGGAGCATGCTCATCACCGTAGCCACCGGCGCCGATCGAGAGGCTCGCAGAGAGCCGCGGACGCGGGAGCGACGCGCGCCCCCGTCCGGCCGCCACGCCACCAGCCTCCGCCCATCCCAGGCGGTGCGGCGGGCGCCGGAGCGGGCGGGCGAGGAAGGCCGCCTGGCCGAAGGCCACGGCCGCCTGCTGCATCTCCGG] [+] EMBL CA762391 [TTTTTTTTTTTTTTTTATTCAAAATTTCTATGGTTATCCGATATCACCTTTTGTATATGAGATAAAAAAAAATTGTAAACTACTCCAAGGCTTCCACCAGGATAGGGGTTTCTAGTTTACATTTTTGGAGGAATATCCAATGAAAACCATCGAATGAATGAAAACCGAAACTGAATTTTTTTCTAAATTCATGGAAAATTTACTAGAGATAAGTATAGGTGTGAACTACATTTCCACCAAATCTCAAGTTCAAATCCAGCTTCCTACTATTCACCAAAATTTTGTCTTCTTTTCCTTCCAAATAAAGTTGAGTTTAGACAGAGAGATTTGAAGGGAATGTAGTCCATGCTTACACATATTTCTAGTAATTTTTTCAATAATTTAGAAAACTTTTAGTTCCGATTTTCATAGGTTTTCGCTTTTTCGCCACAGATATCCCTGTTTGTTTTCTCAACAAGGGATACATCTTACAAACCTAAAAGAAGGGAATAAAGGTAGCTATGAATTCACTACGGAGTGGAAAAAAAGCATCGATTTGATTTGGAACCAAAAAAAAAAAGCAATAGCGCCGCCCTGTTGCCAGGTTCTTAACAGAAATTTCACTTGAGGAAAGTACAACCCAAGAACAAGAAAACATAAGCCACAAGAGAAGAAAGGAGCTCGATGGACCAAGTAGGTGGGA ] [-] EMBL AK062863 [ CATCGATTTGATTGGGAACC AAAAAAAAAAGCAATAGCGCCGCCCTGTTGCCAGGTTCTTAACAGAAATTTCACTTGAGGAAAGTACAACCCAAGAACAAGAAAACATAAGCCACAAGAGAAGAAAGGAGCTCGATGGACCAAGTAGGTGGGATGGCAAATGTTGGAATCACTGGGACAAGCAAAGATCCCACAATCCAGCCACCCACAAAAACTCCAAACCCTGTCATAGACG CCCTGGAAAGATTTTTCATCTTTTCATTGAGGAAATATATGCATGAGACGAGTGATAGTGCAAGCTGGAAAGTAGGCCCAGTCTCAGCGGACGTTACAATGCTCCACCCAGCAATAAAAGCAAAAAGAGCAAGTCTTCTTGAAATAATCTCCGCTGATGGCACCTCAAAGAACCCAAGCATTGCCTTAAACCATGATGGGGATTCCTCGACTTGCTTTTGTATTTTGCTTTTCAGATTAATT ] [-] EMBL BF430628 [ CCGCCAGAGCTCCGAACCCTGTCATAGACGCCCCTGGAAAGATTTTTCATCTTTTCATTGAGGAAATATATGCATGAGGCGAGTGATAGCGCAAGCTGGAAAGTAGGCCCAGTCTCAGCGGATGTTGCAATGCTCCGCCCAGCAATAAAAGCAGAAAGAGCAAGTCTTCTTGAAATAATCTCCGCTGATGGCACCTCAAAGAACCCAAGCATTGCCTTAAGCCATGATGGGGATTCCTCGACTTGCTTTTGTATTTTGCTTTTCAGATTAATTTTGGATTTCTTACGGTGTGAGTAGCTTTTCATTATTATTTTTTCATAAGCACCTTCAATAGCCTCTTCGGTCTCTTCATGCCCAGCATATTGCTTAAGAAGAAAATTCCTTGCACTCCTGATCTCTTCTTCGGATGCATCATGATCAACACCAAGAATCTTGTAGGGGTCCCATGCTTGCTGTCTTGGGAACAACGGAGCATGCTCATCACCGTAGCCACCGGCGCCGATCGAGAGGCTCGCAGAGAGCCGCGGACGCGGGAGCGACGCGCGCCCCCGTCCGGCCGCCACGCCACCAGCCTCCGCCCATCCCAGGCGGTGCGGCGGGCGCCGGAGCGGGCGGGCGAGGAAGGCCGCCTGGCCGAAGGCCACGGCCGCCTGCTGCATCTCCGG] consensusID : consensus_6926#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 462 fasta sequence [TTACGGGGAAAAAAGCTTCGATTTGANTTGGAACCAAAAAAAANNAGCAATAGCATCCGGCCCTGTTGNCNGGTTCTTACCNGAAATTTCTCTTGAGGAAAGTNCNGACNCAAGAGCAANGNNACATAAGCCACAAGAGAAGAAAGGAGCTCGATGGACCAAGTNGGTGGCATGGCAAATGTTGGAATCACTGGGACAAGCNAAGATTCCNCAATATCAGGCCANNCACANNACCTNCTNNCCCTGTCATNNACGCACTGGAAAGNTNTTTCATCTTTTCATTGAGGAAATATATGCATNAGACGAGTGATAGCGCNAGCTGGAAAGTAGGNCCNGTCTCATCGNATGNTACNATGCTCCACCCAGCAATAAAAGCANANAGAGCAAGTCTTCTTGGAATANTCTCCNNTGATGGCGCNTCAAAGAACCCAAGCAGTTGCCNTNAGCCATNATGGGGATTCC] [-] EMBL CA767277 [TTACGGGGAAAAAAGCTTCGATTTGANTTGGAACCAAAAAAAANNAGCAATAGCATCCGGCCCTGTTGNCNGGTTCTTACCNGAAATTTCTCTTGAGGAAAGTNCNGACNCAAGAGCAANGNNACATAAGCCACAAGAGAAGAAAGGAGCTCGATGGACCAAGTNGGTGGCATGGCAAATGTTGGAATCACTGGGACAAGCNAAGATTCCNCAATATCAGGCCANNCACANNACCTNCTNNCCCTGTCATNNACGCACTGGAAAGNTNTTTCATCTTTTCATTGAGGAAATATATGCATNAGACGAGTGATAGCGCNAGCTGGAAAGTAGGNCCNGTCTCATCGNATGNTACNATGCTCCACCCAGCAATAAAAGCANANAGAGCAAGTCTTCTTGGAATANTCTCCNNTGATGGCGCNTCAAAGAACCCAAGCAGTTGCCNTNAGCCATNATGGGGATTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6926#0 TTTTTTTTTTTTTTTTATTCAAAATTTCTATGGTTATCCGATATCACCTTTTGTATATGA 60 consensus_6926#1 ------------------------------------------------------------ consensus_6926#0 GATAAAAAAAAATTGTAAACTACTCCAAGGCTTCCACCAGGATAGGGGTTTCTAGTTTAC 120 consensus_6926#1 ------------------------------------------------------------ consensus_6926#0 ATTTTTGGAGGAATATCCAATGAAAACCATCGAATGAATGAAAACCGAAACTGAATTTTT 180 consensus_6926#1 ------------------------------------------------------------ consensus_6926#0 TTCTAAATTCATGGAAAATTTACTAGAGATAAGTATAGGTGTGAACTACATTTCCACCAA 240 consensus_6926#1 ------------------------------------------------------------ consensus_6926#0 ATCTCAAGTTCAAATCCAGCTTCCTACTATTCACCAAAATTTTGTCTTCTTTTCCTTCCA 300 consensus_6926#1 ------------------------------------------------------------ consensus_6926#0 AATAAAGTTGAGTTTAGACAGAGAGATTTGAAGGGAATGTAGTCCATGCTTACACATATT 360 consensus_6926#1 ------------------------------------------------------------ consensus_6926#0 TCTAGTAATTTTTTCAATAATTTAGAAAACTTTTAGTTCCGATTTTCATAGGTTTTCGCT 420 consensus_6926#1 ------------------------------------------------------------ consensus_6926#0 TTTTCGCCACAGATATCCCTGTTTGTTTTCTCAACAAGGGATACATCTTACAAACCTAAA 480 consensus_6926#1 ------------------------------------------------------------ consensus_6926#0 AGAAGGGAATAAAGGTAGCTATGAATTCACTACGGAGTGGAAAAAAAGCATCGATTTGAT 540 consensus_6926#1 -----------------------------TTACGGGG----AAAAAAGCTTCGATTTGAN 27 ***** * ******** ********* consensus_6926#0 TTGGAACCAAAAAAAAAAAGCAATAGCGCC--GCCCTGTTGCCAGGTTCTTAACAGAAAT 598 consensus_6926#1 TTGGAACCAAAAAAAANNAGCAATAGCATCCGGCCCTGTTGNCNGGTTCTTACCNGAAAT 87 **************** ********* * ********* * ******** * ***** consensus_6926#0 TTCACTTGAGGAAAGTACA-ACCCAAGAACAAGAAAACATAAGCCACAAGAGAAGAAAGG 657 consensus_6926#1 TTCTCTTGAGGAAAGTNCNGACNCAAGAGCAANGNNACATAAGCCACAAGAGAAGAAAGG 147 *** ************ * ** ***** *** ************************ consensus_6926#0 AGCTCGATGGACCAAGTAGGTGGGATGGCAAATGTTGGAATCACTGGGACAAGCAAAGAT 717 consensus_6926#1 AGCTCGATGGACCAAGTNGGTGGCATGGCAAATGTTGGAATCACTGGGACAAGCNAAGAT 207 ***************** ***** ****************************** ***** consensus_6926#0 CCCACAAT--CCAGCCACCCACAAAAACTCCAAACCCTGTCATAGACGCCCTGGAAAGAT 775 consensus_6926#1 TCCNCAATATCAGGCCANNCACANNACCTNCTNNCCCTGTCATNNACGCACTGGAAAGNT 267 ** **** * **** **** * ** * ********* **** ******** * consensus_6926#0 TTTTCATCTTTTCATTGAGGAAATATATGCATGAGACGAGTGATAGTGCAAGCTGGAAAG 835 consensus_6926#1 NTTTCATCTTTTCATTGAGGAAATATATGCATNAGACGAGTGATAGCGCNAGCTGGAAAG 327 ******************************* ************* ** ********** consensus_6926#0 TAGGCCCAGTCTCAGCGGACGTTACAATGCTCCACCCAGCAATAAAAGCAAAAAGAGCAA 895 consensus_6926#1 TAGGNCCNGTCTCATCGNATGNTACNATGCTCCACCCAGCAATAAAAGCANANAGAGCAA 387 **** ** ****** ** * * *** ************************ * ******* consensus_6926#0 GTCTTCTTGAAATAATCTCCGCTGATGGCACCTCAAAGAACCCAAGCA-TTGCCTTAAAC 954 consensus_6926#1 GTCTTCTTGGAATANTCTCCNNTGATGGCGCNTCAAAGAACCCAAGCAGTTGCCNTNAGC 447 ********* **** ***** ******* * **************** ***** * * * consensus_6926#0 CATGATGGGGATTCCTCGACTTGCTTTTGTATTTTGCTTTTCAGATTAATTTTGGATTTC 1014 consensus_6926#1 CATNATGGGGATTCC--------------------------------------------- 462 *** *********** consensus_6926#0 TTACGGTGTGAGTAGCTTTTCATTATTATTTTTTCATAAGCACCTTCAATAGCCTCTTCG 1074 consensus_6926#1 ------------------------------------------------------------ consensus_6926#0 GTCTCTTCATGCCCAGCATATTGCTTAAGAAGAAAATTCCTTGCACTCCTGATCTCTTCT 1134 consensus_6926#1 ------------------------------------------------------------ consensus_6926#0 TCGGATGCATCATGATCAACACCAAGAATCTTGTAGGGGTCCCATGCTTGCTGTCTTGGG 1194 consensus_6926#1 ------------------------------------------------------------ consensus_6926#0 AACAACGGAGCATGCTCATCACCGTAGCCACCGGCGCCGATCGAGAGGCTCGCAGAGAGC 1254 consensus_6926#1 ------------------------------------------------------------ consensus_6926#0 CGCGGACGCGGGAGCGACGCGCGCCCCCGTCCGGCCGCCACGCCACCAGCCTCCGCCCAT 1314 consensus_6926#1 ------------------------------------------------------------ consensus_6926#0 CCCAGGCGGTGCGGCGGGCGCCGGAGCGGGCGGGCGAGGAAGGCCGCCTGGCCGAAGGCC 1374 consensus_6926#1 ------------------------------------------------------------ consensus_6926#0 ACGGCCGCCTGCTGCATCTCCGG 1397 consensus_6926#1 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||