These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6937#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1730 fasta sequence [GACTAGTCCTCTCTCTCCGGGAGAAATTTTGCTCCGGCCGCCTCGGCGTCGCGCTCCGCGGCTCGTAATCTTTCGCGGTGGCCGGCGGCGGGGGAGAGGAGGAGGAGGAGGAGGAGGGAGATGAAGGCGTGCGCGAGGGCAGCGGGGGAGAGGCTCCCCCTGGTCGGTGCTCCCGCCAGGCAACCCCTGGCTCGGAGTTTTGTTAAGGTCAACAGATTATCATCTCAACATGAGACGAAGTCTGTGGTATCCTGCTCGGTAAGGGTGTCAGATGACAAGACACACCGAATAGAAGCCACGGCAGAACACATCCTTCCAGCAACAAATGATCATGTCATGAAAGCAATTGACTCAATTAACAGGGGGCAAGTGATTGCGGTGCCCACCGATACGATTTATGGCTTTGCTTGTGATGCATGGTTAGTTTTACTAAAAGTACATTTTGTGCCAAGAATTTTATTCTTCTCATTTGCTTTGTTGTCCTATTGTTCTCATGTTAACTCCAATTTAACACCTTCTGCAATGATGTGAGTAGATGTCTAACAAGGCCAACCCCTGAAAAGAAACTCTGATCAGTAAATCCAGATTCTAGTTATGAGGAGTTTGTGTGCTCATATCTAAATTAGTCATGTACAAAAAATATTCACAAACAGTTCAGAAACTTTCATTAGTTACTATTGAATCTCACTTTCATTTAGATTTGGAAGCAATGTTTCGTGACTTTGTTCATTTTAAGCTAGGTTTACTTTTTTGGAGATTCTCTGACTGGTTGGCTGCATTCATCCATTGGTTATTTTTAAAATGGGTCTCTCAATCTTCATGACAGCTCTGCAGAAGCAGTTAATCGTATATATGAGATCAAAGGACGCGTACAGACACGGCCTCTTGCAATCTGTGTTGCTGATGTCCCAGACATATCACGGTTTGCTGTTGTGGATCACCTACCTCATGGCCTGCTTGATAGTCTACTTCCTGGGCCTGTCACAGTTGTTTTAAAACGAGGTAACAACAGTATATTGGAGAGATCTCTTAATCCTGGTTTGGAAAGCATTGGAGTTCGTGTGCCAGATTTTGATTTCATTCGAGCCATTTCCCGTGGTGCTGGAAGTGCGCTTGCACTTACAAGCGCCAACTTAAGCGGGCATCCTAGTAGTGTCAACGTCAAAGATTTTGAGGATCTGTGGCCACATTGTTCATATGTCTTTGATGGTGGAATCCTCCCTTCTGGGCGTGCTGGTTCAACAATTGTGGACCTAATAACACCAGGAGTCTACAAGATATTGAGAGATGGAAGTTCAAGGCAGGAAACGACAGCGGTGCTCGGCAAGTTTGGCTTTGTTGAAGCTTGGTGACAACTTGTTGACCTCATAAAATTGGATCATGATTCAATTTGAAATAGTATACTCTTTGTTGGTGATTAAATGTAACAGAAGTCAGAATCATGACCGGAGATGATGTCATCTCGATAGAAAAACAATCATACGCTAATGGCCATGGGAAAAGGATCGGCCGTCCAAGCTACAGCAAACCTGCTGAAATCCTTCAGCGAGAAAGAAAGAATAACTGGAAATGAGTACAAGAGACTCCAAAAGTTTAGCATAATGGCTAATATGGGTACTATTAGGCTATATTTTTCCCTTTTGTGTAGCTCCATTTCAATTCAGCTGCAATTTTTCAGAGTAAAATTGGTACATGAATCATGAATGGCTAATATGGGTACTATTAGGCTA] [+] EMBL AK065564 [GACTAGTCCTCTCTCTCCGGGAGAAATTTTGCTCCGGCCGCCTCGGCGTCGCGCTCCGCGGCTCGTAATCTTTCGCGGTGGCCGGCGGCGGGGGAGAGGAGGAGGAGGAGGAGGAGGGAGATGAAGGCGTGCGCGAGGGCAGCGGGGGAGAGGCTCCCCCTGGTCGGTGCTCCCGCCAGGCAACCCCTGGCTCGGAGTTTTGTTAAGGTCAACAGATTATCATCTCAACATGAGACGAAGTCTGTGGTATCCTGCTCGGTAAGGGTGTCAGATGACAAGACACACCGAATAGAAGCCACGGCAGAACACATCCTTCCAGCAACAAATGATCATGTCATGAAAGCAATTGACTCAATTAACAGGGGGCAAGTGATTGCGGTGCCCACCGATACGATTTATGGCTTTGCTTGTGATGCATGGTTAGTTTTACTAAAAGTACATTTTGTGCCAAGAATTTTATTCTTCTCATTTGCTTTGTTGTCCTATTGTTCTCATGTTAACTCCAATTTAACACCTTCTGCAATGATGTGAGTAGATGTCTAACAAGGCCAACCCCTGAAAAGAAACTCTGATCAGTAAATCCAGATTCTAGTTATGAGGAGTTTGTGTGCTCATATCTAAATTAGTCATGTACAAAAAATATTCACAAACAGTTCAGAAACTTTCATTAGTTACTATTGAATCTCACTTTCATTTAGATTTGGAAGCAATGTTTCGTGACTTTGTTCATTTTAAGCTAGGTTTACTTTTTTGGAGATTCTCTGACTGGTTGGCTGCATTCATCCATTGGTTATTTTTAAAATGGGTCTCTCAATCTTCATGACAGCTCTGCAGAAGCAGTTAATCGTATATATGAGATCAAAGGACGCGTACAGACACGGCCTCTTGCAATCTGTGTTGCTGATGTCCCAGACATATCACGGTTTGCTGTTGTGGATCACCTACCTCATGGCCTGCTTGATAGTCTACTTCCTGGGCCTGTCACAGTTGTTTTAAAACGAGGTAACAACAGTATATTGGAGAGATCTCTTAATCCTGGTTTGGAAAGCATTGGAGTTCGTGTGCCAGATTTTGATTTCATTCGAGCCATTTCCCGTGGTGCTGGAAGTGCGCTTGCACTTACAAGCGCCAACTTAAGCGGGCATCCTAGTAGTGTCAACGTCAAAGATTTTGAGGATCTGTGGCCACATTGTTCATATGTCTTTGATGGTGGAATCCTCCCTTCTGGGCGTGCTGGTTCAACAATTGTGGACCTAATAACACCAGGAGTCTACAAGATATTGAGAGATGGAAGTTCAAGGCAGGAAACGACAGCGGTGCTCGGCAAGTTTGGCTTTGTTGAAGCTTGGTGACAACTTGTTGACCTCATAAAATTGGATCATGATTCAATTTGAAATAGTATACTCTTTGTTGGTGATTAAATGTAACAGAAGTCAGAATCATGACCGGAGATGATGTCATCTCGATAGAAAAACAATCATACGCTAATGGCCATGGGAAAAGGATCGGCCGTCCAAGCTACAGCAAACCTGCTGAAATCCTTCAGCGAGAAAGAAAGAATAACTGGAAATGAGTACAAGAGACTCCAAAAGTTTAGCATAATGGCTAATATGGGTACTATTAGGCTATATTTTTCCCTTTTGTGTAGCTCCATTTCAATTCAGCTGCAATTTTTCAGAGTAAAATTGGTACATGAATCATGAATGGCTAATATGGGTACTATTAGGCTA] consensusID : consensus_6937#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1223 fasta sequence [CTAGTCCTCTCTCTCCGGGAGAAATTTTGCTCCGGCCGCCTCGGCGTCGCGCTCCGCGGCTCGTAATCTTTCGCGGTGGCCGGCGGCGGGGGAGAGGAGGAGGAGGAGGAGGAGGGAGATGAAGGCGTGCGCGAGGGCAGCGGGGGAGAGGCTCCCCCTGGTCGGTGCTCCCGCCAGGCAACCCCTGGCTCGGAGTTTTGTTAAGGTCAACAGATTATCATCTCAACATGAGACGAAGTCTGTGGTATCCTGCTCGGTAAGGGTGTCAGATGACAAGACACACCGAATAGAAGCCACGGCAGAACACATCCTTCCAGCAACAAATGATCATGTCATGAAAGCAATTGACTCAATTAACAGGGGGCAAGTGATTGCGGTGCCCACCGATACGATTTATGGCTTTGCTTGTGATGCATGCTCTGCAGAAGCAGTTAATCGTATATATGAGATCAAAGGACGCGTACAGACACGGCCTCTTGCAATCTGTGTTGCTGATGTCCCAGACATATCACGGTTTGCTGTTGTGGATCACCTACCTCATGGCCTGCTTGATAGTCTACTTCCTGGGCCTGTCACAGTTGTTTTAAAACGAGGTAACAACAGTATATTGGAGAGATCTCTTAATCCTGGTTTGGAAAGCATTGGAGTTCGTGTGCCAGATTTTGATTTCATTCGAGCCATTTCCCGTGGTGCTGGAAGTGCGCTTGCACTTACAAGCGCCAACTTAAGCGGGCATCCTAGTAGTGTCAACGTCAAAGATTTTGAGGATCTGTGGCCACATTGTTCATATGTCTTTGATGGTGGAATCCTCCCTTCTGGGCGTGCTGGTTCAACAATTGTGGACCTAATAACACCAGGAGTCTACAAGATATTGAGAGAT-GGAAGTTCAA-GGCAGG-AAACGACAGCGGTGCTCGGC-AAGTTTGGCTTTGTTGAAGCTTGGTGACAACTTGTTGACCTCAT-AAAATTGGTACCATCAAATACTAGTCCCTTTGTTATCTATCTGGCTTCTTGCTTAGTTAGGTGCTGTACCAGAATATAGGTTGTTGTTTGTGCTTTTCTTTTTCATATTCTGAATCAGAAGGTGTCAGCTTCCTGTTTCAATGTCAATGCCCTTACAGTATCACGTGAACTTCGATTGCTACACTACAGTTCATTCTATGGTAGATTACACTAGCATGCCTATGCAAGCTAAAAGAAATATTGATTGTAATGGATTTTAATAT] [+] EMBL AK067825 [CTAGTCCTCTCTCTCCGGGAGAAATTTTGCTCCGGCCGCCTCGGCGTCGCGCTCCGCGGCTCGTAATCTTTCGCGGTGGCCGGCGGCGGGGGAGAGGAGGAGGAGGAGGAGGAGGGAGATGAAGGCGTGCGCGAGGGCAGCGGGGGAGAGGCTCCCCCTGGTCGGTGCTCCCGCCAGGCAACCCCTGGCTCGGAGTTTTGTTAAGGTCAACAGATTATCATCTCAACATGAGACGAAGTCTGTGGTATCCTGCTCGGTAAGGGTGTCAGATGACAAGACACACCGAATAGAAGCCACGGCAGAACACATCCTTCCAGCAACAAATGATCATGTCATGAAAGCAATTGACTCAATTAACAGGGGGCAAGTGATTGCGGTGCCCACCGATACGATTTATGGCTTTGCTTGTGATGCATGCTCTGCAGAAGCAGTTAATCGTATATATGAGATCAAAGGACGCGTACAGACACGGCCTCTTGCAATCTGTGTTGCTGATGTCCCAGACATATCACGGTTTGCTGTTGTGGATCACCTACCTCATGGCCTGCTTGATAGTCTACTTCCTGGGCCTGTCACAGTTGTTTTAAAACGAGGTAACAACAGTATATTGGAGAGATCTCTTAATCCTGGTTTGGAAAGCATTGGAGTTCGTGTGCCAGATTTTGATTTCATTCGAGCCATTTCCCGTGGTGCTGGAAGTGCGCTTGCACTTACAAGCGCCAACTTAAGCGGGCATCCTAGTAGTGTCAACGTCAAAGATTTTGAGGATCTGTGGCCACATTGTTCATATGTCTTTGATGGTGGAATCCTCCCTTCTGGGCGTGCTGGTTCAACAATTGTGGACCTAATAACACCAGGAGTCTACAAGATATTGAGAGAT GGAAGTTCAA GGCAGG AAACGACAGCGGTGCTCGGC AAGTTTGGCTTTGTTGAAGCTTGGTGACAACTTGTTGACCTCAT AAAATTGGTACCATCAAATACTAGTCCCTTTGTTATCTATCTGGCTTCTTGCTTAGTTAGGTGCTGTACCAGAATATAGGTTGTTGTTTGTGCTTTTCTTTTTCATATTCTGAATCAGAAGGTGTCAGCTTCCTGTTTCAATGTCAATGCCCTTACAGTATCACGTGAACTTCGATTGCTACACTACAGTTCATTCTATGGTAGATTACACTAGCATGCCTATGCAAGCTAAAAGAAATATTGATTGTAAT ] [-] EMBL AU063465 [ ACAAGATATTGACNGATGGGAAGTTCAANGCCAGGAAAACGACAGCNGTGCTCGGCNAAGTTTGGCTTTGGTGAAGCTTGGTGACAACTTGGTGACCTCAT AAAATTGGTACCATCAAATACTAGTCCCTTTGTTATCTATCTGGCNTCTTGCNTAGTTAGGTGCTGTACCAGAATATAGGTTGTTGTTTGTGCTTTTCTTTTTCATATTCTGAATCAGAAGGTGTCAGCTTCCTGTTTCAATGTCAATGCCCTTACAGTATCACGTGAACTTCGATTGCTACACTACAGTTCATTCTATGGTAGATTACACTAGCATGCCTATGCAAGCTAAAAGAAATATTGATTGTAATGGATTTTAATAT] [-] EMBL AU063450 [ nCTTGTTGACCTCATAAAAATTGGTACCATCAAATACTAGTCCCTTTGTTATCTANCTGNCTTCTTGCTTAGTTAGGTGCTGTACCAGAATATAGGTTGTTGTNTGTGCTTTTCTTTTTCATATTCTGAATCAGAAGGTGTCAGCTTCCTGTTTCAATGTCAATGCCCTTACAGTATCACGTGAACTTCGATTGCTACACTACAGTTCATTCTATGGTAGATTACACTAGCATGCCTATGCAAGCTAAAAGAAATATTGATTGTAATGGATTTTAATAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6937#0 GACTAGTCCTCTCTCTCCGGGAGAAATTTTGCTCCGGCCGCCTCGGCGTCGCGCTCCGCG 60 consensus_6937#1 --CTAGTCCTCTCTCTCCGGGAGAAATTTTGCTCCGGCCGCCTCGGCGTCGCGCTCCGCG 58 ********************************************************** consensus_6937#0 GCTCGTAATCTTTCGCGGTGGCCGGCGGCGGGGGAGAGGAGGAGGAGGAGGAGGAGGGAG 120 consensus_6937#1 GCTCGTAATCTTTCGCGGTGGCCGGCGGCGGGGGAGAGGAGGAGGAGGAGGAGGAGGGAG 118 ************************************************************ consensus_6937#0 ATGAAGGCGTGCGCGAGGGCAGCGGGGGAGAGGCTCCCCCTGGTCGGTGCTCCCGCCAGG 180 consensus_6937#1 ATGAAGGCGTGCGCGAGGGCAGCGGGGGAGAGGCTCCCCCTGGTCGGTGCTCCCGCCAGG 178 ************************************************************ consensus_6937#0 CAACCCCTGGCTCGGAGTTTTGTTAAGGTCAACAGATTATCATCTCAACATGAGACGAAG 240 consensus_6937#1 CAACCCCTGGCTCGGAGTTTTGTTAAGGTCAACAGATTATCATCTCAACATGAGACGAAG 238 ************************************************************ consensus_6937#0 TCTGTGGTATCCTGCTCGGTAAGGGTGTCAGATGACAAGACACACCGAATAGAAGCCACG 300 consensus_6937#1 TCTGTGGTATCCTGCTCGGTAAGGGTGTCAGATGACAAGACACACCGAATAGAAGCCACG 298 ************************************************************ consensus_6937#0 GCAGAACACATCCTTCCAGCAACAAATGATCATGTCATGAAAGCAATTGACTCAATTAAC 360 consensus_6937#1 GCAGAACACATCCTTCCAGCAACAAATGATCATGTCATGAAAGCAATTGACTCAATTAAC 358 ************************************************************ consensus_6937#0 AGGGGGCAAGTGATTGCGGTGCCCACCGATACGATTTATGGCTTTGCTTGTGATGCATGG 420 consensus_6937#1 AGGGGGCAAGTGATTGCGGTGCCCACCGATACGATTTATGGCTTTGCTTGTGATGCATG- 417 *********************************************************** consensus_6937#0 TTAGTTTTACTAAAAGTACATTTTGTGCCAAGAATTTTATTCTTCTCATTTGCTTTGTTG 480 consensus_6937#1 ------------------------------------------------------------ consensus_6937#0 TCCTATTGTTCTCATGTTAACTCCAATTTAACACCTTCTGCAATGATGTGAGTAGATGTC 540 consensus_6937#1 ------------------------------------------------------------ consensus_6937#0 TAACAAGGCCAACCCCTGAAAAGAAACTCTGATCAGTAAATCCAGATTCTAGTTATGAGG 600 consensus_6937#1 ------------------------------------------------------------ consensus_6937#0 AGTTTGTGTGCTCATATCTAAATTAGTCATGTACAAAAAATATTCACAAACAGTTCAGAA 660 consensus_6937#1 ------------------------------------------------------------ consensus_6937#0 ACTTTCATTAGTTACTATTGAATCTCACTTTCATTTAGATTTGGAAGCAATGTTTCGTGA 720 consensus_6937#1 ------------------------------------------------------------ consensus_6937#0 CTTTGTTCATTTTAAGCTAGGTTTACTTTTTTGGAGATTCTCTGACTGGTTGGCTGCATT 780 consensus_6937#1 ------------------------------------------------------------ consensus_6937#0 CATCCATTGGTTATTTTTAAAATGGGTCTCTCAATCTTCATGACAGCTCTGCAGAAGCAG 840 consensus_6937#1 ----------------------------------------------CTCTGCAGAAGCAG 431 ************** consensus_6937#0 TTAATCGTATATATGAGATCAAAGGACGCGTACAGACACGGCCTCTTGCAATCTGTGTTG 900 consensus_6937#1 TTAATCGTATATATGAGATCAAAGGACGCGTACAGACACGGCCTCTTGCAATCTGTGTTG 491 ************************************************************ consensus_6937#0 CTGATGTCCCAGACATATCACGGTTTGCTGTTGTGGATCACCTACCTCATGGCCTGCTTG 960 consensus_6937#1 CTGATGTCCCAGACATATCACGGTTTGCTGTTGTGGATCACCTACCTCATGGCCTGCTTG 551 ************************************************************ consensus_6937#0 ATAGTCTACTTCCTGGGCCTGTCACAGTTGTTTTAAAACGAGGTAACAACAGTATATTGG 1020 consensus_6937#1 ATAGTCTACTTCCTGGGCCTGTCACAGTTGTTTTAAAACGAGGTAACAACAGTATATTGG 611 ************************************************************ consensus_6937#0 AGAGATCTCTTAATCCTGGTTTGGAAAGCATTGGAGTTCGTGTGCCAGATTTTGATTTCA 1080 consensus_6937#1 AGAGATCTCTTAATCCTGGTTTGGAAAGCATTGGAGTTCGTGTGCCAGATTTTGATTTCA 671 ************************************************************ consensus_6937#0 TTCGAGCCATTTCCCGTGGTGCTGGAAGTGCGCTTGCACTTACAAGCGCCAACTTAAGCG 1140 consensus_6937#1 TTCGAGCCATTTCCCGTGGTGCTGGAAGTGCGCTTGCACTTACAAGCGCCAACTTAAGCG 731 ************************************************************ consensus_6937#0 GGCATCCTAGTAGTGTCAACGTCAAAGATTTTGAGGATCTGTGGCCACATTGTTCATATG 1200 consensus_6937#1 GGCATCCTAGTAGTGTCAACGTCAAAGATTTTGAGGATCTGTGGCCACATTGTTCATATG 791 ************************************************************ consensus_6937#0 TCTTTGATGGTGGAATCCTCCCTTCTGGGCGTGCTGGTTCAACAATTGTGGACCTAATAA 1260 consensus_6937#1 TCTTTGATGGTGGAATCCTCCCTTCTGGGCGTGCTGGTTCAACAATTGTGGACCTAATAA 851 ************************************************************ consensus_6937#0 CACCAGGAGTCTACAAGATATTGAGAGATGGAAGTTCAAGGCAGGAAACGACAGCGGTGC 1320 consensus_6937#1 CACCAGGAGTCTACAAGATATTGAGAGATGGAAGTTCAAGGCAGGAAACGACAGCGGTGC 911 ************************************************************ consensus_6937#0 TCGGCAAGTTTGGCTTTGTTGAAGCTTGGTGACAACTTGTTGACCTCATAAAATTGGATC 1380 consensus_6937#1 TCGGCAAGTTTGGCTTTGTTGAAGCTTGGTGACAACTTGTTGACCTCATAAAATTGG--T 969 ********************************************************* consensus_6937#0 ATGATTCAATTTGAAATAGTATACTCTTTGTTGGTGATTAAATGTAACAGAAGTCAGAAT 1440 consensus_6937#1 ACCATCAAATACTAGTCCCTTTGTTATCTATCTGGCTTCTTGCTTAGTTAGGTGCTGTAC 1029 * ** *** * * * * * * * * * ** * * * consensus_6937#0 CATGACCGGAGATGATGTCATCTCGATAGAAAAACAATCATACGCTAATGGCCATGGGAA 1500 consensus_6937#1 CAGAATATAGGTTGTTGTTTGTGCTTTT----CTTTTTCATATTCTGA--ATCAGAAGGT 1083 ** * * ** *** * * ***** ** * ** * consensus_6937#0 AAGGATCGGCCGTCCAAGCTACAGCAAACCTGCTGAAATCCTTCAGCGAGAAAGAAAGAA 1560 consensus_6937#1 GTCAGCTTCCTGTTTCAATGTCAATGCCCTTACAGTATCACGTGAACTTCGATTGCTACA 1143 * ** * ** * * * * * * * * * * * consensus_6937#0 TAACTGGAAATGAGTACAAGAGACTCCAAAAGTTTAGC-ATAATGGCTAATATGGGTACT 1619 consensus_6937#1 CTACAGTTCATTC-TATGGTAGATTACACTAGCATGCCTATGCAAGCTAAAAGAAATATT 1202 ** * ** ** *** * ** ** * * ** ***** * ** * consensus_6937#0 -ATTAGGCTATATTTTTCCCTTTTGTGTAGCTCCATTTCAATTCAGCTGCAATTTTTCAG 1678 consensus_6937#1 GATTGTAATGGATTTTAATAT--------------------------------------- 1223 *** * ***** * consensus_6937#0 AGTAAAATTGGTACATGAATCATGAATGGCTAATATGGGTACTATTAGGCTA 1730 consensus_6937#1 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||