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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6943#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1145 fasta sequence
[ACCACACGCCGACGCCGACGCCGACGACCATGGCCGCCGCCACCTCCACCGCCGCCTACTGGCTCGCCGAGCACCCGGCAATCGTGTCCTTCAGGTGGAGCCCCACGGGGCTGTGGTTCTCCACCTGGGCCTTCCTCCTCGGCTTCCTCGCCTCCTACGTCGCGCTCTGCCTCGCCCTCGACGCCATCCTCGCCGCCCTTTTGCGCCGCCGGAGGCCGCTCCCGCTGGGGCCCTTGCCCGCGGCCCACGCGCTCCTGATGGCCGCCGTCTCCGCCGCCATCTTCGCCGGCACGCTGCTCTCCGCGCTCGCCGAGATACGCGACACGCGGTGGTCGTGGCGCGGACGGAGCCGCACCACCCCGTTCCGCTGGCTCCTCTGCTTCCCGCCGGGGACGCGCTCCTCCGGCCGCGTCTTCTTCTGGTCCTACGCATACTACCTCTCCCGCTACCTCCACGCCGCGCGGGGGCTCTTCGCCGTGCTGCAACGCCGTCGCGGCGCCGCGGCGAGGGTGTTCGCGCACGCGGCATCCGTCGCCATGGCCTTCCTCTGGCTCGAGTTCTCGCAGTCGTTCCAGGTGCTCGCCATCCTCGCCTCCACGCTCGCCCACGCCGTCGCCTTCGGGTTCCGCTTCTGGGTCGGCGCCGGCCTCCCCGCCGCCCGTGGCGCCCCCGTCGCGCTCGCCTGCCAGTGCGCGCTCCTCGGGTGCAACCTCCTCTGCCACGTCGGCGTCGTGTGGATGCACTTCGGCGGCGTCGCCGGCGGCGGGTGCAGCGGCATCGGCGCCTGGGTCTTCAACACCCTCCTCAACGCCGCGCTCCTCTGGGTCTTCTTGCATTGCTACGGCAAGCGCGGCGTCTGCGACGACGACGGCGGCGCCACCGCCGCCAGCGCGCGCCACGACAAGGACCTATGAGGTGAACCACCACCCACCATGCATCCTTGTAACATGTTCCTCACTACTCTACTACTTAGATTGTAAATAGGTGTGGCGTCCAAACGGGGATCGAAGAGATTAACATGACACAAAAAAAAAATCAACAAACAAAGATGGGATTGGTGTAGGAGCAATTCGATGATCCAATCCCTGCTTACTTCTACTTCTTAGTGCTATGTTGTTATTGTGTTGTTCATGTCAGTAAAAGAA]
[+] EMBL AK108161 [ACCACACGCCGACGCCGACGCCGACGACCATGGCCGCCGCCACCTCCACCGCCGCCTACTGGCTCGCCGAGCACCCGGCAATCGTGTCCTTCAGGTGGAGCCCCACGGGGCTGTGGTTCTCCACCTGGGCCTTCCTCCTCGGCTTCCTCGCCTCCTACGTCGCGCTCTGCCTCGCCCTCGACGCCATCCTCGCCGCCCTTTTGCGCCGCCGGAGGCCGCTCCCGCTGGGGCCCTTGCCCGCGGCCCACGCGCTCCTGATGGCCGCCGTCTCCGCCGCCATCTTCGCCGGCACGCTGCTCTCCGCGCTCGCCGAGATACGCGACACGCGGTGGTCGTGGCGCGGACGGAGCCGCACCACCCCGTTCCGCTGGCTCCTCTGCTTCCCGCCGGGGACGCGCTCCTCCGGCCGCGTCTTCTTCTGGTCCTACGCATACTACCTCTCCCGCTACCTCCACGCCGCGCGGGGGCTCTTCGCCGTGCTGCAACGCCGTCGCGGCGCCGCGGCGAGGGTGTTCGCGCACGCGGCATCCGTCGCCATGGCCTTCCTCTGGCTCGAGTTCTCGCAGTCGTTCCAGGTGCTCGCCATCCTCGCCTCCACGCTCGCCCACGCCGTCGCCTTCGGGTTCCGCTTCTGGGTCGGCGCCGGCCTCCCCGCCGCCCGTGGCGCCCCCGTCGCGCTCGCCTGCCAGTGCGCGCTCCTCGGGTGCAACCTCCTCTGCCACGTCGGCGTCGTGTGGATGCACTTCGGCGGCGTCGCCGGCGGCGGGTGCAGCGGCATCGGCGCCTGGGTCTTCAACACCCTCCTCAACGCCGCGCTCCTCTGGGTCTTCTTGCATTGCTACGGCAAGCGCGGCGTCTGCGACGACGACGGCGGCGCCACCGCCGCCAGCGCGCGCCACGACAAGGACCTATGAGGTGAACCACCACCCACCATGCATCCTTGTAACATGTTCCTCACTACTCTACTACTTAGATTGTAAATAGGTGTGGCGTCCAAACGGGGATCGAAGAGATTAACATGACACAAAAAAAAAATCAACAAACAAAGATGGGATTGGTGTAGGAGCAATTCGATGATCCAATCCCTGCTTACTTCTACTTCTTAGTGCTATGTTGTTATTGTGTTGTTCATGTCAGTAAAAGAA]
consensusID : consensus_6943#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 470 fasta sequence
[CGCCGCCGCCGCCGCCGTTTTCTCCCGTCGTACGACGCTGCGTGTTCCCGAGTCTCCCTTCCGCCGCCGCCCTCCGGAGCCGGCCTGAGTTTGGACGAGGTTGGGAGGGAGGTCGCCTTGGACGAGGANGGGGAGGAGGAGGAGGTGGTGGTGGTGGTGGGGCGGCGCCGTCGCGGGGGGAGATGGGGGCCGCGCGTGGCGGGGTGCGGCGCGTCCGGCGGGAAGCGCTCGTNGCGTGCATGACGTGCCCGCTCTGCAAGGGGCTCCTCCGGGAAGCCACCGCCATCACCGAGTNCCTCCACACCTTTTGCAAGGAGTGCATTATGGAGAAAATAGATGACGAAGAAGTCGATCACTGCCCAGTATGCAACATTGATCTTGGCTGTGATCCTGAAGAGAAACTCAGGCCCGACCATAATGTTCAAGATATCAGGAATAANGTTTTTCCACTTAAAGTGAAAAAGGTTNGT]
[+] EMBL AU056426 [CGCCGCCGCCGCCGCCGTTTTCTCCCGTCGTACGACGCTGCGTGTTCCCGAGTCTCCCTTCCGCCGCCGCCCTCCGGAGCCGGCCTGAGTTTGGACGAGGTTGGGAGGGAGGTCGCCTTGGACGAGGANGGGGAGGAGGAGGAGGTGGTGGTGGTGGTGGGGCGGCGCCGTCGCGGGGGGAGATGGGGGCCGCGCGTGGCGGGGTGCGGCGCGTCCGGCGGGAAGCGCTCGTNGCGTGCATGACGTGCCCGCTCTGCAAGGGGCTCCTCCGGGAAGCCACCGCCATCACCGAGTNCCTCCACACCTTTTGCAAGGAGTGCATTATGGAGAAAATAGATGACGAAGAAGTCGATCACTGCCCAGTATGCAACATTGATCTTGGCTGTGATCCTGAAGAGAAACTCAGGCCCGACCATAATGTTCAAGATATCAGGAATAANGTTTTTCCACTTAAAGTGAAAAAGGTTNGT]
consensusID : consensus_6943#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence
[ACTCTTCTCTCTGACTCTAGGCAGGCCGGCCGGCGGGCGGCGGTGACGTGGGAGAAGGGGAAGATGGCGGCAGGGCGAGGCGGTGTCGATGAGCGAGTGCGGTGGCGGAGAGGCGGCGACAGCTGCCACGCAGGAGGGGAGGCCGGCGCCGACCCAGAAGCGGAAGCCGAAGGCGACGGTGTGGGCGAGCGTGGAGGCAGAGGAAGGCCATGGCGACGAAGGCCGCGTGCGCGACGTGTCCGCTCCGCAAGGGGCTCCTCCGGGAGGCCACCGCCATCACCGAGTGCCTCCACACCTGTATGGAAGTTTGCTGATGTGTTGTTAACAATTTGCTCGAAGTCATCGAAGAACTGAAGATGTGGTTTGGGGTGGTTCATTATGCAACAAAGGTAAAGTTATCTAGTCCAAAGTGAAAAGATTGGACAAAGGATAGTCCAAAGTGAAA]
[+] EMBL AK062944 [ACTCTTCTCTCTGACTCTAGGCAGGCCGGCCGGCGGGCGGCGGTGACGTGGGAGAAGGGGAAGATGGCGGCAGGGCGAGGCGGTGTCGATGAGCGAGTGCGGTGGCGGAGAGGCGGCGACAGCTGCCACGCAGGAGGGGAGGCCGGCGCCGACCCAGAAGCGGAAGCCGAAGGCGACGGTGTGGGCGAGCGTGGAGGCAGAGGAAGGCCATGGCGACGAAGGCCGCGTGCGCGACGTGTCCGCTCCGCAAGGGGCTCCTCCGGGAGGCCACCGCCATCACCGAGTGCCTCCACACCTGTATGGAAGTTTGCTGATGTGTTGTTAACAATTTGCTCGAAGTCATCGAAGAACTGAAGATGTGGTTTGGGGTGGTTCATTATGCAACAAAGGTAAAGTTATCTAGTCCAAAGTGAAAAGATTGGACAAAGGATAGTCCAAAGTGAAA]
consensusID : consensus_6943#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 186 fasta sequence
[AGAGGACGAGACAAGGGATCGAAGAGATTAACATGACCCAAAAAAAATCAACAAACAAAGATGGGATTGGTGTAGGAGCAATTCGATGATCCAATCCCTGCTTACTTCTACTTTTTAGTGCTATGTTGTTATTGTGTTGTTCATGTCAGTAAAAGAAGAAGAAATTTTGCAAAAAAAAAAAAAAAA]
[-] EMBL CA761903 [AGAGGACGAGACAAGGGATCGAAGAGATTAACATGACCCAAAAAAAATCAACAAACAAAGATGGGATTGGTGTAGGAGCAATTCGATGATCCAATCCCTGCTTACTTCTACTTTTTAGTGCTATGTTGTTATTGTGTTGTTCATGTCAGTAAAAGAAGAAGAAATTTTGCAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6943#0 ACCACACGCCGACGCCGACGCCGACGACCATGGCCGCCGCCACCTCCACCGCCGCCTACT 60
consensus_6943#3 ------------------------------------------------------------
consensus_6943#2 ------------------------------------------------------------
consensus_6943#1 ------------------------------------------------------------
consensus_6943#0 GGCTCGCCGAGCACCCGGCAATCGTGTCCTTCAGGTGGAGCCCCACGGGGCTGTGGTTCT 120
consensus_6943#3 ------------------------------------------------------------
consensus_6943#2 ------------------------------------------------------------
consensus_6943#1 ------------------------------------------------------------
consensus_6943#0 CCACCTGGGCCTTCCTCCTCGGCTTCCTCGCCTCCTACGTCGCGCTCTGCCTCGCCCTCG 180
consensus_6943#3 ------------------------------------------------------------
consensus_6943#2 ------------------------------------------------------------
consensus_6943#1 ------------------------------------------------------------
consensus_6943#0 ACGCCATCCTCGCCGCCCTTTTGCGCCGCCGGAGGCCGCTCCCGCTGGGGCCCTTGCCCG 240
consensus_6943#3 ------------------------------------------------------------
consensus_6943#2 ------------------------------------------------------------
consensus_6943#1 ------------------------------------------------------------
consensus_6943#0 CGGCCCACGCGCTCCTGATGGCCGCCGTCTCCGCCGCCATCTTCGCCGGCACGCTGCTCT 300
consensus_6943#3 ------------------------------------------------------------
consensus_6943#2 ------------------------------------------------------------
consensus_6943#1 ------------------------------------------------------------
consensus_6943#0 CCGCGCTCGCCGAGATACGCGACACGCGGTGGTCGTGGCGCGGACGGAGCCGCACCACCC 360
consensus_6943#3 ------------------------------------------------------------
consensus_6943#2 ------------------------------------------------------------
consensus_6943#1 ------------------------------------------------------------
consensus_6943#0 CGTTCCGCTGGCTCCTCTGCTTCCCGCCGGGGACGCGCTCCTCCGGCCGCGTCTTCTTCT 420
consensus_6943#3 ------------------------------------------------------------
consensus_6943#2 ------------------------------------------------------------
consensus_6943#1 ------------------------------------------------------------
consensus_6943#0 GGTCCTACGCATACTACCTCTCCCGCTACCTCCACGCCGCGCGGGGGCTCTTCGCCGTGC 480
consensus_6943#3 ------------------------------------------------------------
consensus_6943#2 ------------------------------------------------------------
consensus_6943#1 ------------------------------------------------------------
consensus_6943#0 TGCAACGCCGTCGCGGCGCCGCGGCGAGGGTGTTCGCGCACGCGGCATCCGTCGCCATGG 540
consensus_6943#3 ------------------------------------------------------------
consensus_6943#2 ------------------------------------------------------------
consensus_6943#1 ------------------------------------------------------------
consensus_6943#0 CCTTCCTCTGGCTCGAGTTCTCGCAGTCGTTCCAGGTGCTCGCCATCCTCGCCTCCACGC 600
consensus_6943#3 ------------------------------------------------------------
consensus_6943#2 ------------------------------------------------------------
consensus_6943#1 ------------------------------------------------------------
consensus_6943#0 TCGCCCACGCCGTCGCCTTCGGGTTCCGCTTCTGGGTCGGCGCCGGCCTCCCCGCCGCCC 660
consensus_6943#3 ------------------------------------------------------------
consensus_6943#2 ------------------------------------------------------------
consensus_6943#1 ------------------------------------------------------------
consensus_6943#0 GTGGCGCCCCCGTCGCGCTCGCCTGCCAGTGCGCGCTCCTCGGGTGCAACCTCCTCTGCC 720
consensus_6943#3 ------------------------------------------------------------
consensus_6943#2 ------------------------------------------------------------
consensus_6943#1 ------------------------------------------------------------
consensus_6943#0 ACGTCGGCGTCGTGTGGATGCACTTCGGCGGCGTCGCCGGCGGCGGGTGCAGCGGCATCG 780
consensus_6943#3 ------------------------------------------------------------
consensus_6943#2 ---ACTCTTCTCTCTGACTCTAGGCAGGCCGGCCGGCGGGCGGCGGTGACGTGGGAGAAG 57
consensus_6943#1 -CGCCGCCGCCGCCGCCGTTTTCTCCCGTCGTACGACGCTGCGTGTTCCCGAGTCTCCCT 59
consensus_6943#0 GCGCCTGGGTCTTCAACACCCTCCT-CAACGCCGCGCTCCTCTGGGTCTTCTTGCATTGC 839
consensus_6943#3 ------------------------------------------------------------
consensus_6943#2 GGGAAGATGGCGGCAGGGCGAGGCGGTGTCGATGAGCGAGTGCGGTGGCGGAGAGGCGGC 117
consensus_6943#1 TCCGCCGCCGCCCTCCGGAGCCGGCCTGAGTTTGGACGAGGTTGGGAGGGAGGTCGCCTT 119
consensus_6943#0 TACGGCAAGCGCGGCGTCTGCGACGACGACGGCGGCGCCACCGCCGCC--AGCGCGCGCC 897
consensus_6943#3 ------------------------------------------------------------
consensus_6943#2 GACAGCTGCCACGCAGGAGGGGAGGCCGGCGCCGACCCAGAAGCGGAA--GCCGAAGGCG 175
consensus_6943#1 GGACGAGGANGGGGAGGAGGAGGAGGTGGTGGTGGTGGTGGGGCGGCGCCGTCGCGGGGG 179
consensus_6943#0 ACGACAAGGAC-CTATGAGGTGAACCACCACCCACCATG---CATCCTTGTAACATGTTC 953
consensus_6943#3 ------------------------------------------------------------
consensus_6943#2 ACGGTGTGGGC-GAGCGTGGAGGCAGAGGAAG-GCCATG---GCGACGAAGGCCGCGTGC 230
consensus_6943#1 GAGATGGGGGCCGCGCGTGGCGGGGTGCGGCGCGTCCGGCGGGAAGCGCTCGTNGCGTGC 239
consensus_6943#0 CTCACTACTCTACTACTTAGATTGTAAATAGGTGTGGCGTCCAAACG-GGGATCGAAGAG 1012
consensus_6943#3 ----------------------------------AGAGGACGAGACAAGGGATCGAAGAG 26
consensus_6943#2 GCGACGTGTCCGCTCCGCAAGGGGCTCCTCCGGGAGGCCACC-GCCA--TCACCGAGTGC 287
consensus_6943#1 ATGACGTGCCCGCTCTGCAAGGGGCTCCTCCGGGAAGCCACC-GCCA--TCACCGAGTNC 296
* * * ***
consensus_6943#0 ATTAACATGACACAAAAAAAAAATCAACAAACAAAGATGGGATTGGTGTAGGAGCAATTC 1072
consensus_6943#3 ATTAACATGACCCAAAAAAA--ATCAACAAACAAAGATGGGATTGGTGTAGGAGCAATTC 84
consensus_6943#2 CTCCACACCTGTATGGAAGTTTGCTGATGTGTTGTTAACAATTTGCTC--GAAGTCATCG 345
consensus_6943#1 CTCCACACCTTTTGCAAGGAGTGC-ATTATGGAGAAAATAGAT-GACGAAGAAGTCGATC 354
* *** * * * * * **
consensus_6943#0 GATGATCCAATCCCTGCTTACTTCTACTTCTTAGTGCTATGTTGTTATTGTG------TT 1126
consensus_6943#3 GATGATCCAATCCCTGCTTACTTCTACTTTTTAGTGCTATGTTGTTATTGTG------TT 138
consensus_6943#2 AAGAACTGAAGATGTGGTTTGGGGTGGTTCATTATGCAACAAAGGTA--AAG------TT 397
consensus_6943#1 ACTGCCCAGTATGCAACATTGATCTTGGCTGTGATCCTGAAGAGAAACTCAGGCCCGACC 414
* * * * * * * *
consensus_6943#0 GTTCATGTCAGTAAAAGAA------------------------------------- 1145
consensus_6943#3 GTTCATGTCAGTAAAAGAAGAAGAAATTTTGCAAAAAAAAAAAAAAAA-------- 186
consensus_6943#2 ATCTAGTCCAAAGTGAAAAGATTGGACAAAGGATAGTCCAAAGTGAAA-------- 445
consensus_6943#1 ATAATGTTCAAGATATCAGGAATAANGTTTTTCCACTTAAAGTGAAAAAGGTTNGT 470
* ** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||