These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6952#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 256 fasta sequence [TGGCATGAGGACTGTTCGATTGACAATTTGTATGTACATTTCCACCGTTTACGCAGCTTAGGAATTGGACCATAATTAGTTGTGTACCTGCAAGTTTTGTATACGAATTATCCTGAAGGGTGTTCGGTGGATTGAATATTGCCCTTTTGGTTGTTTTGCGCATCGTGGATGCGGCTGCTCTACATTTTTCTTATAGGAAATCAGCTTCTGATAAAAGGGNTTATTATCTGTGTGATCTACTGATCGATATTTTANC] [+] EMBL OSR23431A [TGGCATGAGGNCTGTTCGATTGACAATTTGTATGTACATTTCCACCGTTTACGCAGCTTAGGAATTGGACCATAATTAGTTGTGTACCTGCAAGTTTTGTATACGAATTATCCTGAAGGGTGTTCGGTGGATTGAATATTGCCCTTTTGGTTGTTTTGCGCATCGTGGATGCGGCTGCTCTACATTTTTCTTATAGGAAATCAGCTTCTGATAAAAGGGNTTATTATCTGTGTGATCTACTGATCGATATTTTANC] [+] EMBL BI812634 [TGGCATGAGGACTGTTCGATTGACAATTTGTATGTACATTTCCACCGTTTACGCAGCTTAGGAATTGGACCATAATTAGTTGTGTACCTGCAAGTTTTGTATACGAATTATCCTGAAGGGTGTTCGGTGGATTGAATATTGCCCTTTTGGTTGTTTTGCGCATCGTGGATGCGGCTGCTCTACATTTTTCTTATAGGAAATCAGCTTCTGATAAAAaaaaa ] [+] EMBL OSR22611A [TGGCATGAGGACTGTTCGATTGACAATTTGTATGTACATTTCCACCGTTTACGCAGCTTAGGAATTGGACCATAATTAGTTGTGTACCTGCAAGTTTTGTATACGA ] consensusID : consensus_6952#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 226 fasta sequence [TGGCATGAGGACCTGTTCGAGTTGTACCATTTGTAGNGGACATTTCCCCCGTTTACGCAGCTTAGGAATTGGACCATAATTANGTTGTGTACCCGCAAGTTTTGGTATACGAATTATCCTGTAAGGGTGTTCGGTGGATTGAATATTGCCCCTTTGGTTGTTTTGCGCATTTNGGANCGGCTGCTTTACATTTTTTTTATAGGAAATCAGCTTTTGAAAAAAAAAA] [+] EMBL BI806851 [TGGCATGAGGACCTGTTCGAGTTGTACCATTTGTAGNGGACATTTCCCCCGTTTACGCAGCTTAGGAATTGGACCATAATTANGTTGTGTACCCGCAAGTTTTGGTATACGAATTATCCTGTAAGGGTGTTCGGTGGATTGAATATTGCCCCTTTGGTTGTTTTGCGCATTTNGGANCGGCTGCTTTACATTTTTTTTATAGGAAATCAGCTTTTGAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6952#0 TGGCATGAGGAC-TGTTCGA-TTG-ACAATTTGTA-TGTACATTTCCACCGTTTACGCAG 56 consensus_6952#1 TGGCATGAGGACCTGTTCGAGTTGTACCATTTGTAGNGGACATTTCCCCCGTTTACGCAG 60 ************ ******* *** ** ******* * ******** ************ consensus_6952#0 CTTAGGAATTGGACCATAATTAG-TTGTGTACCTGCAAGTTTTG-TATACGAATTATCCT 114 consensus_6952#1 CTTAGGAATTGGACCATAATTANGTTGTGTACCCGCAAGTTTTGGTATACGAATTATCCT 120 ********************** ********* ********** *************** consensus_6952#0 G-AAGGGTGTTCGGTGGATTGAATATTGCCCTTTTGGTTGTTTTGCGCATCGTGGATGCG 173 consensus_6952#1 GTAAGGGTGTTCGGTGGATTGAATATTGCCCCTTTGGTTGTTTTGCGCATTTNGGAN-CG 179 * ***************************** ****************** *** ** consensus_6952#0 GCTGCTCTACATTTTTCTTATAGGAAATCAGCTTCTGATAAAAGGGNTTATTATCTGTGT 233 consensus_6952#1 GCTGCTTTACATTTTTTTTATAGGAAATCAGCTTTTGAAAAAAAAAA------------- 226 ****** ********* ***************** *** **** consensus_6952#0 GATCTACTGATCGATATTTTANC 256 consensus_6952#1 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||