Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6960 cluster # 6960       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6960#0 length = 1399 sequences # 4  

consensusID : consensus_6960#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1399
fasta sequence
                              [AGGGAGAATTACTTGTGTGATATTACTTATGTTACAAACAGTGAGCTTGGTTTCGATTATCTAAGAGATAACCTTGCAATGACTGTTGATGAGCTTGTCCTGAGGAACTTTAACTATTGTGTGATAGATGAAGTTGATTCCATTCTCATTGATGAAGCAAGAACACCTCTTATAATATCAGGCCTTGCTGAAAAGCCAAGTGATCGGTATTACAAAGCAGCAAAAATAGCTGAAGTTTTTGAAAGAGATATTCATTACACTGTTGATGAAAAGCAGAGAAATGTTTTACTTACAGAAGAAGGCTATGCGGACGCTGAAGAAATACTGGACATAAATGATCTATACGATCCTCGTGAACAATGGGCTTCATATGTTCTGAATGCAATCAAAGCTAAGGAACTCTTCCTTAGAGATGTGAATTACATTGTCCGTAGCAAGGAAGTGCTTATTGTGGATGAGTTCACAGGTCGAGTAATGCCAGGCAGAAGATGGAGTGATGGTCTTCACCAAGCAATTGAAGCTAAAGAAGGTGTACCTATACAAAATGAAACAATTACCCTTGCGTCAATAAGTTATCAGAACTTCTTTCTACAGTTTCCGAAACTATGTGGCATGACTGGAACTGCTGCTACGGAAAGCCAAGAGTTCGAAAGCATATACAAACTAAAAGTTACCGTTGTTCCAACAAACAAGCCAATGATACGAAAGGATGAATCGGATGTTGTTTTTAGAGCAACAAATGGAAAATGGCGTGCTGCTGTCGTGGAGATATCAAGAATGAACAAAGTTGGTCGCCCTGTGCTTGTTGGTACAACTAGTGTTGAACAAAGTGAAACCTTATCAGAACAATTGCATGAAGCAGGGATTCCTCATGAGGTCCTCAATGCTAAACCAGAGAATGTAGAGAGGGAGGCAGAAATTGTAGCTCAGAGTGGACGCCTTGGTGCAGTGACAATTGCCACCAATATGGCGGGACGTGGTACTGATATTATTCTTGGAGGAAATGCAGAATTCATGGCAAGGTTGAAGCTGCGTGAGATGCTTATGCCAAGAGTTGTTGATCCATTGGATGGTGTCATTATATCTAAAAAGCAGGCCTCACCTAAGAAGACATGGAAGACAAATGAAAGTTTGTTCCCATGTGAACTTTCAAAAGACGCACTATCATATGTTAAAGAGTCTGTTGAAGTGGCTGTCAAAGCCTGNGGAGAAAAATCATTGACCGAGCTAGAAGCTGAAGAGCGGCTCTCCTACTCATGTGAGAAGGGACCAACTCGTGATGAAGTAATTGCAAATCTGAGAAGTGCATTCATGAAGATAATGGATGAATATAAGGTTTACACAGAGGAGGAAAAGAAGTCATTTCAGCAGGTGGACTTCATGTAGTAGGAACAGAACG]

[+] EMBL CB672978             [AGGGAGAATTACTTGTGTGATATTACTTATGTTACAAACAGTGAGCTTGGTTTCGATTATCTAAGAGATAACCTTGCAATGACTGTTGATGAGCTTGTCCTGAGGAACTTTAACTATTGTGTGATAGATGAAGTTGATTCCATTCTCATTGATGAAGCAAGAACACCTCTTATAATATCAGGCCTTGCTGAAAAGCCAAGTGATCGGTATTACAAAGCAGCAAAAATAGCTGAAGTTTTTGAAAGAGATATTCATTACACTGTTGATGAAAAGCAGAGAAATGTTTTACTTACAGAAGAAGGCTATGCGGACGCTGAAGAAATACTGGACATAAATGATCTATACGATCCTCGTGAACAATGGGCTTCATATGTTCTGAATGCAATCAAAGCTAAGGAACTCTTCCTTAGAGATGTGAATTACATTGTCCGTAGCAAGGAAGTGCTTATTGTGGATGAGTTCACAGGTCGAGTAATGCCAGGCAGAAGATGGAGTGATGGTCTTCACCAAGCAATTGAAGCTAAAGAAGGTGTACCTATACAAAATGAAACAATTACCCTTGCGTCAATAAGTTATCAGAACTTCTTTCTACAGTTTCCGAAACTATGTGGCATGACTGGAACTGCTGCTACGGAAAGCCAAGAGTTCGAAAGCATATACAAACTAAAAGTTACCGTTGTTCCAACAAACAAGCCAATGATACGAAAGGATGAATCGGATGTTGTTTTTAGAGCAACAAATGGAAAATGGCGTGCTGCTGTCGTGGAGATATCAAGAATGAACAAAGTTGGTCGCCCTGTGCTTGTTGGTACAACTAGTGTTGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CF303024             [                                                       ATTATCTAAGAGATAACCTTGCAATGACTGTTGATGAGCTTGTCCTGAGGAACTTTAACTATTGTGTGATAGATGAAGTTGATTCCATTCTCATTGATGAAGCAAGAACACCTCTTATAATATCAGGCCTTGCTGAAAAGCCAAGTGATCGGTATTACAAAGCAGCAAAAATAGCTGAAGTTTTTGAAAGAGATATTCATTACACTGTTGATGAAAAGCAGAGAAATGTTTTACTTACAGAAGAAGGCTATGCGGACGCTGAAGAAATACTGGACATAAATGATCTATACGATCCTCGTGAACAATGGGCTTCATATGTTCTGAATGCAATCAAAGCTAAGGAACTCTTCCTTAGAGATGTGAATTACATTGTCCGTAGCAAGGAAGTGCTTATTGTGGATGAGTTCACAGGTCGAGTAATGCCAGGCAGAAGATGGAGTGATGGTCTTCACCAAGCAATTGAAGCTAAAGAAGGTGTACCTATACAAAATGAAACAATTACCCTTGCGTCAATAAGTTATCAGAACTTCTTTCTACAGTTTCCGAAACTATGTGGCATGACTGGAACTGCTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB672408             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AACAATCACCCTTGCGTCAATAAGTTATCAGAACTTCTTTCTACAGTTTCCGAAACTATGTGGCATGACTGGAACTGCTGCTACGGAAAGCCAAGAGTTCGAAAGCATATACAAACTAAAAGTTACCGTTGTTCCAACAAACAAGCCAATGATACGAAAGGATGAATCGGATGTTGTTTTTAGAGCAACAAATGGAAAATGGCGTGCTGCTGTCGTGGAGATATCAAGAATGAACAAAGTTGGTCGCCCTGTGCTTGTTGGTACAACTAGTGTTGAACAAAGTGAAACCTTATCAGAACAATTGCATGAAGCAGGGATTCCTCATGAGGTCCTCAATGCTAAACCAGAGAATGTAGAGAGGGAGGCAGAAATTGTAGCTCAGAGTGGACGCCTTGGTGCAGTGACAATTGCCACCAATATGGCGGGACGTGGTACTGATATTATTCTTGGAGGAAATGCAGAATTCATGGCAAGGTTGAAGCTGCGTGAGATGCTTATGCCAAGAGTTGTTGATCCATTGGATGGTGTCATTATATCTAAAAAGCAGGCCTCACCTAAGAAGACATGGAAGACAAATGAAAGTTTGTTCCCATGTGAACTTTCAAAAGACGCACTATCATATGTTAAAGAGTCTGTTGAAGTGGCTGTCAAAGCCTGNGGAGAAAAATCATTGACCGAGCTAGAAGCTGAAGAGCGGCTCTCCTACTCATGTGAGAAGGGACCAACTCGTGATGAAGTAATTGCAAATCTGAGAAGTGCATTCATGAAGAT                                                                                ]
[+] EMBL CB620695             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TGCTCCTGAAAGCCAAGAGTTCGAAAGCATATACAAACTAAAAGTTACCGTTGTTCCAACAAACAAGCCAATGATACGAAAGGATGAATCGGATGTTGTTTTTAGAGCAACAAATGGAAAATGGCGTGCTGCTGTCGTGGAGATATCAAGAATGAACAAAGTTGGTCGCCCTGTGCTTGTTGGTACAACTAGTGTTGAACAAAGTGAAACCTTATCAGAACAATTGCATGAAGCAGGGATTCCTCATGAGGTCCTCAATGCTAAACCAGAGAATGTAGAGAGGGAGGCAGAAATTGTAGCTCAGAGTGGACGCCTTGGTGCAGTGACAATTGCCACCAATATGGCGGGACGTGGTACTGATATTATTCTTGGAGGAAATGCAGAATTCATGGCAAGGTTGAAGCTGCGTGAGATGCTTATGCCAAGAGTTGTTGATCCATTGGATGGTGTCATTATATCTAAAAAGCAGGCCTCACCTAAGAAGACATGGAAGACAAATGAAAGTTTGTTCCCATGTGAACTTTCAAAAGACGCACTATCATATGTTAAAGAGTCTGTTGAAGTGGCTGTCAAAGCCTGGGGAGAAAAATCATTGACCGAGCTAGAAGCTGAAGAGCGGCTCTCCTACTCATGTGAGAAGGGACCAACTCGTGATGAAGTAATTGCAAATCTGAGAAGTGCATTCATGAAGATAATGGATGAATATAAGGTTTACACAGAGGAGGAAAAGAAGTCATTTCAGCAGGTGGACTTCATGTAGTAGGAACAGAACG]


>consensus_6960#0 AGGGAGAATTACTTGTGTGATATTACTTATGTTACAAACAGTGAGCTTGGTTTCGATTAT CTAAGAGATAACCTTGCAATGACTGTTGATGAGCTTGTCCTGAGGAACTTTAACTATTGT GTGATAGATGAAGTTGATTCCATTCTCATTGATGAAGCAAGAACACCTCTTATAATATCA GGCCTTGCTGAAAAGCCAAGTGATCGGTATTACAAAGCAGCAAAAATAGCTGAAGTTTTT GAAAGAGATATTCATTACACTGTTGATGAAAAGCAGAGAAATGTTTTACTTACAGAAGAA GGCTATGCGGACGCTGAAGAAATACTGGACATAAATGATCTATACGATCCTCGTGAACAA TGGGCTTCATATGTTCTGAATGCAATCAAAGCTAAGGAACTCTTCCTTAGAGATGTGAAT TACATTGTCCGTAGCAAGGAAGTGCTTATTGTGGATGAGTTCACAGGTCGAGTAATGCCA GGCAGAAGATGGAGTGATGGTCTTCACCAAGCAATTGAAGCTAAAGAAGGTGTACCTATA CAAAATGAAACAATTACCCTTGCGTCAATAAGTTATCAGAACTTCTTTCTACAGTTTCCG AAACTATGTGGCATGACTGGAACTGCTGCTACGGAAAGCCAAGAGTTCGAAAGCATATAC AAACTAAAAGTTACCGTTGTTCCAACAAACAAGCCAATGATACGAAAGGATGAATCGGAT GTTGTTTTTAGAGCAACAAATGGAAAATGGCGTGCTGCTGTCGTGGAGATATCAAGAATG AACAAAGTTGGTCGCCCTGTGCTTGTTGGTACAACTAGTGTTGAACAAAGTGAAACCTTA TCAGAACAATTGCATGAAGCAGGGATTCCTCATGAGGTCCTCAATGCTAAACCAGAGAAT GTAGAGAGGGAGGCAGAAATTGTAGCTCAGAGTGGACGCCTTGGTGCAGTGACAATTGCC ACCAATATGGCGGGACGTGGTACTGATATTATTCTTGGAGGAAATGCAGAATTCATGGCA AGGTTGAAGCTGCGTGAGATGCTTATGCCAAGAGTTGTTGATCCATTGGATGGTGTCATT ATATCTAAAAAGCAGGCCTCACCTAAGAAGACATGGAAGACAAATGAAAGTTTGTTCCCA TGTGAACTTTCAAAAGACGCACTATCATATGTTAAAGAGTCTGTTGAAGTGGCTGTCAAA GCCTGNGGAGAAAAATCATTGACCGAGCTAGAAGCTGAAGAGCGGCTCTCCTACTCATGT GAGAAGGGACCAACTCGTGATGAAGTAATTGCAAATCTGAGAAGTGCATTCATGAAGATA ATGGATGAATATAAGGTTTACACAGAGGAGGAAAAGAAGTCATTTCAGCAGGTGGACTTC ATGTAGTAGGAACAGAACG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)