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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6971#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 894 fasta sequence
[CAGCGAACGAGGAGTTTTGCGGCAGCGGCGGCTCGTGGACGCGGCGGCGGAGTAATGGCCGGGGAGGAGACGGCGTCGGGCTCCAAGCCGCCGGCGGCAGCGACGACCATCCGCCTCGTCAACTTCATCTCCGAGGACCAGCTTGACGAGGCGAAGCGGACGAGAGGGGAGCGGGCGGACGACGGCACCGCCCAGCGCGACAAGCCGCTCTTCCAGATCCTGCAGGAGAACAAGGAGAAGAAGGATGCCGAGTTCAACGAGCGGTTCAAGCACAGACCTCCAAAAGCCTTGGATGAAGATGAGATGGAGTTTCTTGACAAACTTGCATCATCAAGGAAGGAATATGAGCAGCAGGTGGCTAATGAAGAAGCTGAACAACTCCGCAGTTTCCAAGAGGCGGTCGCGGCCCGGTCTAATATTATACATGAAGAGGCTCCTACAGTCTCGAGACCAGAGGAGAGCAAGCCTAAGGCAAAAAGGAGCCAACCTGCACTCCTGAAAAATGTAATAATTTCGGTGAAACCACAAGCGAAGAAAGCAAAGTTAGATGGGGAAGATAAGCCTCCTGCGAAGGAGCTTCCTTCAAATGGGCACAGTGCAGATCACAAGCCCCCAGATGCCACCAAGGGCGTGCTTGGTTCTCTGGTGCAGTATGATGATGATGAAAGCAGTGATGGGGACGTATGACAACTGTAACAGAGCAACAGTCTGAGGTTTTGCTGGCTGGTGTCTGGCAAAAATATGTTTTTTCCTGTTTTCCCTGTGCATTAATATCCATGATTTTCTTGTAGCGTGTGAATTTATTGTCAGCGGTGATGATAATTTGATAACGAAAACAATACTAATGCACGAATACACTTATAACCCTGGTGTTTTTTTTCCCAGTTCTACCTG]
[+] EMBL AK064712 [CAGCGAACGAGGAGTTTTGCGGCAGCGGCGGCTCGTGGACGCGGCGGCGGAGTAATGGCCGGGGAGGAGACGGCGTCGGGCTCCAAGCCGCCGGCGGCAGCGACGACCATCCGCCTCGTCAACTTCATCTCCGAGGACCAGCTTGACGAGGCGAAGCGGACGAGAGGGGAGCGGGCGGACGACGGCACCGCCCAGCGCGACAAGCCGCTCTTCCAGATCCTGCAGGAGAACAAGGAGAAGAAGGATGCCGAGTTCAACGAGCGGTTCAAGCACAGACCTCCAAAAGCCTTGGATGAAGATGAGATGGAGTTTCTTGACAAACTTGCATCATCAAGGAAGGAATATGAGCAGCAGGTGGCTAATGAAGAAGCTGAACAACTCCGCAGTTTCCAAGAGGCGGTCGCGGCCCGGTCTAATATTATACATGAAGAGGCTCCTACAGTCTCGAGACCAGAGGAGAGCAAGCCTAAGGCAAAAAGGAGCCAACCTGCACTCCTGAAAAATGTAATAATTTCGGTGAAACCACAAGCGAAGAAAGCAAAGTTAGATGGGGAAGATAAGCCTCCTGCGAAGGAGCTTCCTTCAAATGGGCACAGTGCAGATCACAAGCCCCCAGATGCCACCAAGGGCGTGCTTGGTTCTCTGGTGCAGTATGATGATGATGAAAGCAGTGATGGGGACGTATGACAACTGTAACAGAGCAACAGTCTGAGGTTTTGCTGGCTGGTGTCTGGCAAAAATATGTTTTTTCCTGTTTTCCCTGTGCATTAATATCCATGATTTTCTTGTAGCGTGTGAATTTATTGTCAGCGGTGATGATAATTTGATAACGAAAACAATACTAATGCACGAATACACTTATAACCCTGGTGTTTTTTTTCCCAGTTCTACCTG]
[+] EMBL AU070839 [ GCAAAGTTAGATGGGGAAGATAAGCCTCCTGCGAAGGAGCTTCCTTCAAATGGGCACAGTGCAGATCACAAGCCCCCAGATGCCACCAAGGGCGTGCTTGGTTCTCTGGTGCAGTATGATGATGATGAAAGCAGTGATGGGGACGTATGACAACTGTAACAGAGCAACAGTCTGAGGTTTTGCTGGCTGGTGTCTGGCAAAAATATGTNTTTTCCTGTTTTCCCTGTGCATTAATATCCATGATTTTCTTGTAGCGTGTGAATTTATTGTCAGCGGTGATGATAATTTGATAACGAAAACAATACT ]
[+] EMBL AU101696 [ CAAAGTTAGATGGGGAAGATAAGCCTCCTGCGAAGGAGCTTCCTTCAAATGGGCACAGTGCAGATCACAAGCCCCCAGATGCCACCAAGGGCGTGCTTGGTTCTCTGGTGCAGTATGATGATGATGAAAGCAGTGATGGGGACGTATGACAACTGTAACAGAGCAACAGTCTGAGGTTTTGCTGGCTGGTGTCTGGCAAAAATATGTTTTTTCCTGTTTTCCCTGTGCATTAATATCCATGATTTTCTTGTAGCGTGTGAATTTATTGTCAGCGGTGATGATAATTTGATAACGAAAACAATACTAATGCACGAAana ]
consensusID : consensus_6971#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 786 fasta sequence
[ATGGAACTCCCCCTTCATGTAGTAGAGATTTATATTAGATTGAATTATTATTATTCAAGATGATTGTTCTTGATTCATGACAACAACTATCCATTGGGTTGGCAATTATCATACAAATTTAAATGGTACAAAGTTGATCTGAAGTCAAATGCTTCGATAGCTTGATTGTATTTGTAATCTCCAAGTTAATTCACAGTCTTTGTTATTTGAATACATGAGAAATTATGGAGTGCAAACATATGTGCTTTTAGGTATATTGAATGTATCTATAGCCCATGCTTTTGCAACATCTTAAATCCTCCTTTTATGCCACCTTTGTGCAGTCAAGGAGGGAATATGAGCAGCAGGTGGCTAATGAAGAAGCTGAACAACTCCGCAGTTTCCAAGAGGCGGTCGCGGCCCGGTCTAATATTATACATGAAGAGGCTCCTACAGTCTCGAGACCAGAGGAGAGCAAGCCTAAGGCAAAAAGGAGCCAACCTGCACTCCTGAAAAATGTAATAATTTCGGTGAAACCACAAGCGAAGAAAGCAAAGTTAGATGGGGAAGATAAGCCTCCTGCGAAGGAGCTTCCTTCAAATGGGCACAGTGCAGATCACAAGCCCCCAGATGCCACCAAGGGCGTGCTTGGTTCTCTGGTGCAGTATGATGATGATGAAAGCAGTGATGGGGGACGTATGACAACTGTAACAGAGCAACAGTCTGAGGNTTTGCTGGCTGGTGTCTGGCAAAAATATGGTTTTTNCTGGTTTCCCTGNGCATTAATATCCATGATTTTCTTGNAGC]
[+] EMBL CA765296 [ATGGAACTCCCCCTTCATGTAGTAGAGATTTATATTAGATTGAATTATTATTATTCAAGATGATTGTTCTTGATTCATGACAACAACTATCCATTGGGTTGGCAATTATCATACAAATTTAAATGGTACAAAGTTGATCTGAAGTCAAATGCTTCGATAGCTTGATTGTATTTGTAATCTCCAAGTTAATTCACAGTCTTTGTTATTTGAATACATGAGAAATTATGGAGTGCAAACATATGTGCTTTTAGGTATATTGAATGTATCTATAGCCCATGCTTTTGCAACATCTTAAATCCTCCTTTTATGCCACCTTTGTGCAGTCAAGGAGGGAATATGAGCAGCAGGTGGCTAATGAAGAAGCTGAACAACTCCGCAGTTTCCAAGAGGCGGTCGCGGCCCGGTCTAATATTATACATGAAGAGGCTCCTACAGTCTCGAGACCAGAGGAGAGCAAGCCTAAGGCAAAAAGGAGCCAACCTGCACTCCTGAAAAATGTAATAATTTCGGTGAAACCACAAGCGAAGAAAGCAAAGTTAGATGGGGAAGATAAGCCTCCTGCGAAGGAGCTTCCTTCAAATGGGCACAGTGCAGATCACAAGCCCCCAGATGCCACCAAGGGCGTGCTTGGTTCTCTGGTGCAGTATGATGATGATGAAAGCAGTGATGGGGGACGTATGACAACTGTAACAGAGCAACAGTCTGAGGNTTTGCTGGCTGGTGTCTGGCAAAAATATGGTTTTTNCTGGTTTCCCTGNGCATTAATATCCATGATTTTCTTGNAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6971#0 CAGCGAACGAGGAGTTTTGCGGCAGCGGCGGCTCGTGGACGCGGCGGCGGAGTAATGGCC 60
consensus_6971#1 -ATGGAACTCC--CCCTTCATGTAGTAGAGATTTATATTAG----ATTGAATTATTATTA 53
* **** ** * ** * * * * * * * ** *
consensus_6971#0 GGGGAGGAGACGGCGTCGGGCTCCAAGCCGCCGGCGGCAGCGACGACCATCCGCCTCGT- 119
consensus_6971#1 TTCAAGATGATTGTTCTTGATTCATGACAACAACTATCCATTGGGTTGGCAATTATCATA 113
** ** * * ** * * * * ** *
consensus_6971#0 CAACTTCATCTCCGAGGACCAGCTTGAC--GAGGCGAAGCGGACGAGAGGGGAGCGGGCG 177
consensus_6971#1 CAAATTTAAAT---GGTACAAAGTTGATCTGAAGTCAAATGCTTCGATAGCTTGATTGTA 170
*** ** * * * ** * **** ** * ** * * * *
consensus_6971#0 GACGACGGCACCGCCCAGCGCGACAAGCCGCTCTTCCAGATCCTGCAGGAGAACAAGGAG 237
consensus_6971#1 TTTGTAATCTCCAAGTTAATTCACAGTCTTTGTTATTTGAATACATGAGAAATTATGGAG 230
* * ** *** * * ** ** * * ****
consensus_6971#0 AAGAAGGATGCCGAGTTCAACGAGCGGTTCAAGCACAGACCTCCAAAAGCCTTGGATGAA 297
consensus_6971#1 TGCAAACATATGTGCTTTTAGGTATATTGAATGTATCTATAGCCCATGCTTTTGCAACAT 290
** ** ** * * * * * * * ** * *** * *
consensus_6971#0 GATGAGATGGAGTTTCTTGACAAACTTGCATCATCAAGGAAGGAATATGAGCAGCAGGTG 357
consensus_6971#1 CTTAAATCCTCCTTTTATGCCACCTTTGTGCAGTCAAGGAGGGAATATGAGCAGCAGGTG 350
* * *** ** ** *** ******* *******************
consensus_6971#0 GCTAATGAAGAAGCTGAACAACTCCGCAGTTTCCAAGAGGCGGTCGCGGCCCGGTCTAAT 417
consensus_6971#1 GCTAATGAAGAAGCTGAACAACTCCGCAGTTTCCAAGAGGCGGTCGCGGCCCGGTCTAAT 410
************************************************************
consensus_6971#0 ATTATACATGAAGAGGCTCCTACAGTCTCGAGACCAGAGGAGAGCAAGCCTAAGGCAAAA 477
consensus_6971#1 ATTATACATGAAGAGGCTCCTACAGTCTCGAGACCAGAGGAGAGCAAGCCTAAGGCAAAA 470
************************************************************
consensus_6971#0 AGGAGCCAACCTGCACTCCTGAAAAATGTAATAATTTCGGTGAAACCACAAGCGAAGAAA 537
consensus_6971#1 AGGAGCCAACCTGCACTCCTGAAAAATGTAATAATTTCGGTGAAACCACAAGCGAAGAAA 530
************************************************************
consensus_6971#0 GCAAAGTTAGATGGGGAAGATAAGCCTCCTGCGAAGGAGCTTCCTTCAAATGGGCACAGT 597
consensus_6971#1 GCAAAGTTAGATGGGGAAGATAAGCCTCCTGCGAAGGAGCTTCCTTCAAATGGGCACAGT 590
************************************************************
consensus_6971#0 GCAGATCACAAGCCCCCAGATGCCACCAAGGGCGTGCTTGGTTCTCTGGTGCAGTATGAT 657
consensus_6971#1 GCAGATCACAAGCCCCCAGATGCCACCAAGGGCGTGCTTGGTTCTCTGGTGCAGTATGAT 650
************************************************************
consensus_6971#0 GATGATGAAAGCAGTGATGGGG-ACGTATGACAACTGTAACAGAGCAACAGTCTGAGGTT 716
consensus_6971#1 GATGATGAAAGCAGTGATGGGGGACGTATGACAACTGTAACAGAGCAACAGTCTGAGGNT 710
********************** *********************************** *
consensus_6971#0 TTGCTGGCTGGTGTCTGGCAAAAATATGTTTTTTCCTGTTTTCCCTGTGCATTAATATCC 776
consensus_6971#1 TTGCTGGCTGGTGTCTGGCAAAAATATGGTTTTTNCTGGTTTCCCTGNGCATTAATATCC 770
**************************** ***** *** ******** ************
consensus_6971#0 ATGATTTTCTTGTAGCGTGTGAATTTATTGTCAGCGGTGATGATAATTTGATAACGAAAA 836
consensus_6971#1 ATGATTTTCTTGNAGC-------------------------------------------- 786
************ ***
consensus_6971#0 CAATACTAATGCACGAATACACTTATAACCCTGGTGTTTTTTTTCCCAGTTCTACCTG 894
consensus_6971#1 ----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||