These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6995#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 472 fasta sequence [GGACACGGCGGCGGTGCTCTACTCGTCGGGCACCACAGGGCGGGTCAAGGCCGTCGCGATCACGCACCGCAACCTCATCGCGCTCATGTCGCTGCACGCCGACAACCGGGAGAAGGTCGCGAGGGAGGCCGCCGAGGCGNCGAGGAGCCGCCGCCGCCGGGNTGACGCTGCTCCCCATCCCCCTGTTCCACGTGTTCGGGTTCATNATGGTGCTCCGCTCCGTCTCCATGGGGGAGACCTCCGTGCTCATGGAGCGGTTCGACTTCATCGNCGCGCTGCGGGCAATCGAGCGCTACCGCGTGACGCTGCTGCCCGCGGNGCCGCCCGTGCTCGTCGCCATGGTCAAGTACGAGGAGGCGCGCCGCCGNGACCTNTTCTTCCTGCTGGTCATCGGCATCGGCGGGGTTCCCTAGGCCGCAAGTCGCGAGCAATTGGTTCGTTTTCCCAACGTGGAGTTTTTAAGGTACGTTAA] [+] EMBL OSS3963A [GGACACGGCGGCGGTGCTCTACTCGTCGGGCACCACAGGGCGGGTCAAGGCCGTCGCGATCACGCACCGCAACCTCATCGCGCTCATGTCGCTGCACGCCGACAACCGGGAGAAGGTCGCGAGGGAGGCCGCCGAGGCGNCGAGGAGCCGCCGCCGCCGGGNTGACGCTGCTCCCCATCCCCCTGTTCCACGTGTTCGGGTTCATNATGGTGCTCCGCTCCGTCTCCATGGGGGAGACCTCCGTGCTCATGGAGCGGTTCGACTTCATCGNCGCGCTGCGGGCAATCGAGCGCTACCGCGTGACGCTGCTGCCCGCGGNGCCGCCCGTGCTCGTCGCCATGGTCAAGTACGAGGAGGCGCGCCGCCGNGACCTNTTCTTCCTGCTGGTCATCGGCATCGGCGGGGTTCCCTAGGCCGCAAGTCGCGAGCAATTGGTTCGTTTTCCCAACGTGGAGTTTTTAAGGTACGTTAA] [+] EMBL OSS3910A [GGACACGGCGGCGGTGCTCTACTCGTCGGGCACCACAGGGCGGGTCAAGGCCGTCGCGATCACGCACCGCAACCTCATCGCGCTCATGTCGCTGCACGCCGACAACCGGGAGAAGGTCGCGAGGGAGGCCGCCGAGGCGCCGAGGAGCCGNCGCCGCCGGGGTGACGCTGCTCCCCATCCCCCTGTTCCACGTGTTCGGGTTCATNATGGTGCTCCGCTCCGTCTCCATGGGGGAGACCTCCGTGCTCATGGAGCGGTTCGACTTCATCGCCGCGCTGCGGNCATTCGAGCGCTACCGCNTGACGCTGCTGCCCGCGGAGCCGCCCGTGCTCGTCGCCATGGTCAAGTACGAGGAGGCGCGCC ] consensusID : consensus_6995#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 433 fasta sequence [TCTACTCGTCGGGCACCACAGGGCGGGTCAAGGCCGTCGCGATCACGCACCGCAACCTCATCGCGCTCATGTCGCTGCACGCCGACAACCGGGAGAAGGTCGCGAGGGAGGCCGCCGAGGCGACGAGGAGCCGNCGCCGCCGCGTGGACGCTGCTCCCCATCCCCCTGTTCCACGTGTTCGGGTTCATGATGGTGCTCCGTCCGTCTCCATGGGGGAGACCTCCGTGCTCATGGAGCGGTTCGACTTCATCGCCGCGTTGNGGCCATCGAGCGGTAACGGTGACGTTGTTGCCGCGGCGGCGCCGTGATCGTCGCATGGTCAAAGTACGAGAGGCGCGCGCGGACCTCTTCTCCTGTTGTCATCGCATCGCGGCGTTCCCTAGGCGGAGGTCGCCAGAATTNGTTTCGTTTTCCAAAGTGAGGTTTTTAAGGT] [+] EMBL OSS4303A [TCTACTCGTCGGGCACCACAGGGCGGGTCAAGGCCGTCGCGATCACGCACCGCAACCTCATCGCGCTCATGTCGCTGCACGCCGACAACCGGGAGAAGGTCGCGAGGGAGGCCGCCGAGGCGACGAGGAGCCGNCGCCGCCGCGTGGACGCTGCTCCCCATCCCCCTGTTCCACGTGTTCGGGTTCATGATGGTGCTCCGTCCGTCTCCATGGGGGAGACCTCCGTGCTCATGGAGCGGTTCGACTTCATCGCCGCGTTGNGGCCATCGAGCGGTAACGGTGACGTTGTTGCCGCGGCGGCGCCGTGATCGTCGCATGGTCAAAGTACGAGAGGCGCGCGCGGACCTCTTCTCCTGTTGTCATCGCATCGCGGCGTTCCCTAGGCGGAGGTCGCCAGAATTNGTTTCGTTTTCCAAAGTGAGGTTTTTAAGGT] consensusID : consensus_6995#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 208 fasta sequence [GGACACGNCGGCGGTGCTCTACTCGTCGGGCACCACAGGGCGGGTCAAGGCCGTCGCGATCACGCACCGCAACCTCATCGNGCTCATNTNGCTGCACGCCGACAACCGGGAGAAGGTCGCNAGGAAGGCCGCCGAGGCGNCNAGGAGCCGCCGNCGCCGGGGTTAACGNTGCTCCCNATCCNCNTTTTCCACGTTTTCGGTTTCATAA] [+] EMBL OSS3837A [GGACACGNCGGCGGTGCTCTACTCGTCGGGCACCACAGGGCGGGTCAAGGCCGTCGCGATCACGCACCGCAACCTCATCGNGCTCATNTNGCTGCACGCCGACAACCGGGAGAAGGTCGCNAGGAAGGCCGCCGAGGCGNCNAGGAGCCGCCGNCGCCGGGGTTAACGNTGCTCCCNATCCNCNTTTTCCACGTTTTCGGTTTCATAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6995#0 GGACACGGCGGCGGTGCTCTACTCGTCGGGCACCACAGGGCGGGTCAAGGCCGTCGCGAT 60 consensus_6995#1 -----------------TCTACTCGTCGGGCACCACAGGGCGGGTCAAGGCCGTCGCGAT 43 consensus_6995#2 GGACACGNCGGCGGTGCTCTACTCGTCGGGCACCACAGGGCGGGTCAAGGCCGTCGCGAT 60 ******************************************* consensus_6995#0 CACGCACCGCAACCTCATCGCGCTCATGTCGCTGCACGCCGACAACCGGGAGAAGGTCGC 120 consensus_6995#1 CACGCACCGCAACCTCATCGCGCTCATGTCGCTGCACGCCGACAACCGGGAGAAGGTCGC 103 consensus_6995#2 CACGCACCGCAACCTCATCGNGCTCATNTNGCTGCACGCCGACAACCGGGAGAAGGTCGC 120 ******************** ****** * ****************************** consensus_6995#0 GAGGGAGGCCGCCGAGGCGNCGAGGAGCCGCCGCCGCCGGG-NTGACGCTGCTCCCCATC 179 consensus_6995#1 GAGGGAGGCCGCCGAGGCGACGAGGAGCCGNCGCCGCCGCG-TGGACGCTGCTCCCCATC 162 consensus_6995#2 NAGGAAGGCCGCCGAGGCGNCNAGGAGCCGCCGNCGCCGGGGTTAACGNTGCTCCCNATC 180 *** ************** * ******** ** ***** * *** ******* *** consensus_6995#0 CCCCTGTTCCACGTGTTCGGGTTCATNATGGTGCTCCGCTCCGTCTCCATGGGGGAGACC 239 consensus_6995#1 CCCCTGTTCCACGTGTTCGGGTTCATGATGGTGCTCCG-TCCGTCTCCATGGGGGAGACC 221 consensus_6995#2 CNCNTTTTCCACGTTTTCGGTTTCATAA-------------------------------- 208 * * * ******** ***** ***** * consensus_6995#0 TCCGTGCTCATGGAGCGGTTCGACTTCATCGNCGCGCTGCGGGCAATCGAGCGCTACCGC 299 consensus_6995#1 TCCGTGCTCATGGAGCGGTTCGACTTCATCGCCGCGTTGNGGCCA-TCGAGCGGTAACG- 279 consensus_6995#2 ------------------------------------------------------------ consensus_6995#0 GTGACGCTGCTGCCCGCGGNGCCGCCCGTGCTCGTCGCCATGGTCAA-GTACGAGGAGGC 358 consensus_6995#1 GTGACGTTGTTGCC-GCGGCGGCGCC-GTGATCGTCGC-ATGGTCAAAGTACGAG-AGGC 335 consensus_6995#2 ------------------------------------------------------------ consensus_6995#0 GCGCCGCCGNGACCTNTTCTTCCTGCTGGTCATCGGCATCGGCGGGGTTCCCTAGGCCGC 418 consensus_6995#1 GCGC-GC--GGACCTCTTCT-CCTGTTG-TCATCG-CATCG-CGGCGTTCCCTAGGC-GG 387 consensus_6995#2 ------------------------------------------------------------ consensus_6995#0 AAGTCGCGAGCAATTGGTTCGTTTTCCCAACGTGGAGTTTTTAAGGTACGTTAA 472 consensus_6995#1 AGGTCGCCAG-AATTNGTTTCGTTTTCCAAAGTGAGGTTTTTAAGGT------- 433 consensus_6995#2 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||