These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7029#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1333 fasta sequence [AACATTACTTTACTGTGATAGATTGCCAATCGCAAAATATAACATGTGTATGTAATTTTCAATTTACAACTCCAATACCACCGTAAAATTTGATACAAGAAAAATTAACATGCTTCTGCATTCGACAAATGCAAACTGGAACCATCTACAAGAGAAGAATGAACATCCAACAGTACAATAATTGCATTAGCCTGCAGTGGAAATAGCACTATAATGTGCAATTCAAAAATATCAACACAATGTGCAATTTTGAATTGATTATCTTTATTTACCAGGGCATAAAAAAATTTCTTTTACCTATGGTTTCCCTAATAACTGCATTTGGTTTATTTTAAAATTGCACAAACATATAAACTGCAAGACATAACGATGAGCACTTCGCGAAGCATACAAACTACAAATCGCAATCAACTAACTGACACCTGAACCAAAATCAATTCACATACAGGCCTCACCAACATACTGCATGGCACAATGGGACAAGTAAAGATGTTCATGAAGCTGAGATCACTAAACCAGTGCACGGACCAAAAAGCAAACCGAACAGCTTAAAAAAATGACTGAAAAAATTGAATATTTCAGGTGACTGAAAACTGCAACTCCCTTCACGAAATTTCCAGCCAAAATCAGAACAAACAAGCACCAAATCGAACCAAGCGAACCGAACCGAATCGAATCGAGCAACCATACCAGGAGACCCAAATCGACGAGCGCAGCCCAAAACCCCGCGACTCCGAGCCGCTATGACACCGGCGGAGGCGCCGGCGGCAGGATGCGCTCGATTTGTGCGGCGACGGCTAGGGCAAAAGCGTGGAGGCGAGAGAGCATGGAACCCTAATTTAGCCGCCGCACAAATCCCCCTCTTCGAATCATTAATAATACAGACAGAACGAGAGGGGAATAAACGCGTGGTGAATCGCACGCGAGCCGACCCCCATCCCGTCAAAATCAAATCCAGTCAACCACTCCGGAAAAAAGAATCTATCTGTCTAACCAAAAAAAAGGAAAACCACTGGAATTTTAACCTAAATCCACCAACCCTCCTCCCCGTCTTAATCCCTCCGCGGATTAGCAATGCAAACCCCTCAAATAATAAATAACCGAGCAAGTAGCAATCTCCAGGAAATATTTTGATTGGCCGGGACGAACCGCTCGAGCCACTGGAGATCGTAGTCGTACCGTGCACGGAAGCGGAATCCACAGCTCCTGCTTGATCCCTCCTGCGCTTCCTCTTCCCCTCGTGGCGAGGATGATGATGATGATGATGATGACGGCGACGACGACCGCGGCGATGATTCATTTACGAATTCTTTTTCTGCGGTTTTTTTTTCCT] [+] EMBL CB624091 [AACATTACTTTACTGTGATAGATTGCCAATCGCAAAATATAACATGTGTATGTAATTTTCAATTTACAACTCCAATACCACCGTAAAATTTGATACAAGAAAAATTAACATGCTTCTGCATTCGACAAATGCAAACTGGAACCATCTACAAGAGAAGAATGAACATCCAACAGTACAATAATTGCATTAGCCTGCAGTGGAAATAGCACTATAATGTGCAATTCAAAAATATCAACACAATGTGCAATTTTGAATTGATTATCTTTATTTACCAGGGCATAAAAAAATTTCTTTTACCTATGGTTTCCCTAATAACTGCATTTGGTTTATTTTAAAATTGCACAAACATATAAACTGCAAGACATAACGATGAGCACTTCGCGAAGCATACAAACTACAAATCGCAATCAACTAACTGACACCTGAACCAAAATCAATTCACATACAGGCCTCACCAACATACTGCATGGCACAATGGGACAAGTAAAGATGTTCATGAAGCTGAGATCACTAAACCAGTGCACGGACCAAAAAGCAAACCGAACAGCTTAAAAAAATGACTGAAAAAATTGAATATTTCAGGTGACTGAAAACTGCAACTCCCTTCACGAAATTTCCAGCCAAAATCAGAACAAACAAGCACCAAATCGAACCAAGCGAACCGAACCGAATCGAATCGAGCAACCATACCAGGAGACCCAAATCGACGAGCGCAGCCCAAAACCCCGCGACTCCGAGCCGCTATGACACCGGCGGAGGCGCCGGCGGCAGGATGCGCTCGATTT ] [-] EMBL CB624090 [ AATGACTGAAAAAATTGAATATTTCAGGTGACTGAAAACTGCAACTCCCTTCACGAAATTTCCAGCCAAAATCAGAACAAACAAGCACCAAATCGAACCAAGCGAACCGAACCGAATCGAATCGAGCAACCATACCAGGAGACCCAAATCGACGAGCGCAGCCCAAAACCCCGCGACTCCGAGCCGCTATGACACCGGCGGAGGCGCCGGCGGCAGGATGCGCTCGATTTGTGCGGCGACGGCTAGGGCAAAAGCGTGGAGGCGAGAGAGCATGGAACCCTAATTTAGCCGCCGCACAAATCCCCCTCTTCGAATCATTAATAATACAGACAGAACGAGAGGGGAATAAACGCGTGGTGAATCGCACGCGAGCCGACCCCCATCCCGTCAAAATCAAATCCAGTCAACCACTCCGGAAAAAAGAATCTATCTGTCTAACCAAAAAAAAGGAAAACCACTGGAATTTTAACCTAAATCCACCAACCCTCCTCCCCGTCTTAATCCCTCCGCGGATTAGCAATGCAAACCCCTCAAATAATAAATAACCGAGCAAGTAGCAATCTCCAGGAAATATTTTGATTGGCCGGGACGAACCGCTCGAGCCACTGGAGATCGTAGTCGTACCGTGCACGGAAGCGGAATCCACAGCTCCTGCTTGATCCCTCCTGCGCTTCCTCTTCCCCTCGTGGCGAGGATGATGATGATGATGATGATGACGGCGACGACGACCGCGGCGATGATTCATTTACGAATTCTTTTTCTGCGGTTTTTTTTTCCT] consensusID : consensus_7029#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 338 fasta sequence [CAATCTCCCAGACGAGATCAGCTCTGGGAATGGATATGAAAGCCGTGGTCGCTTCACCTCGGGCACCAGACCAGGTGGCTTCTGCTGTTTGTCTGTAACCTTCCCACATAGCACCGCAAGCAGCGTGCAGTTCACCAGTGAGCTGCTTTGGATTTGAGCCATGGCTGAACCGGTAAAATCACATCTCCCCAATTCAGCTCACTCCACCATTGAACCCAGGAGACCCAAATCGACGAGCGCAGCCCAAAACCCCGCGACTCCGAGCCGCTATGACACCGGCGGCAGGATGCGCTCGATTTGTGCGGCGACGGCTAGGGCAAAAGCGTGGAGGCGAGAGA] [-] EMBL CB641247 [CAATCTCCCAGACGAGATCAGCTCTGGGAATGGATATGAAAGCCGTGGTCGCTTCACCTCGGGCACCAGACCAGGTGGCTTCTGCTGTTTGTCTGTAACCTTCCCACATAGCACCGCAAGCAGCGTGCAGTTCACCAGTGAGCTGCTTTGGATTTGAGCCATGGCTGAACCGGTAAAATCACATCTCCCCAATTCAGCTCACTCCACCATTGAACCCAGGAGACCCAAATCGACGAGCGCAGCCCAAAACCCCGCGACTCCGAGCCGCTATGACACCGGCGGCAGGATGCGCTCGATTTGTGCGGCGACGGCTAGGGCAAAAGCGTGGAGGCGAGAGA] [-] EMBL CB641254 [CAATCTCCCAGACGAGATCAGCTCTGGGAATGGATATGAAAGCCGTGGTCGCTTCACCTCGGGCACCAGACCAGGTGGCTTCTGCTGTTTGTCTGTAACCTTCCCACATAGCACCGCAAGCAGCGTGCAGTTCACCAGTGAGCTGCTTTGGATTTGAGCCATGGCTGAACCGGTAAAATCACATCTCCCCAATTCAGCTCACTCCACCATTGAACCCAGGAGACCCAAATCGACGAGCGCAGCCCAAAACCCCGCGACTCCGAGCCGCTATGACACCGGCGGCAGGATGCGCTCGATTTGTGCGGCGACGGCTAGGGCAAAAGCGTGGAGGCGAGAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7029#0 AACATTACTTTACTGTGATAGATTGCCAATCGCAAAATATAACATGTGTATGTAATTTTC 60 consensus_7029#1 ------------------------------------------------------------ consensus_7029#0 AATTTACAACTCCAATACCACCGTAAAATTTGATACAAGAAAAATTAACATGCTTCTGCA 120 consensus_7029#1 ------------------------------------------------------------ consensus_7029#0 TTCGACAAATGCAAACTGGAACCATCTACAAGAGAAGAATGAACATCCAACAGTACAATA 180 consensus_7029#1 ------------------------------------------------------------ consensus_7029#0 ATTGCATTAGCCTGCAGTGGAAATAGCACTATAATGTGCAATTCAAAAATATCAACACAA 240 consensus_7029#1 ------------------------------------------------------------ consensus_7029#0 TGTGCAATTTTGAATTGATTATCTTTATTTACCAGGGCATAAAAAAATTTCTTTTACCTA 300 consensus_7029#1 ------------------------------------------------------------ consensus_7029#0 TGGTTTCCCTAATAACTGCATTTGGTTTATTTTAAAATTGCACAAACATATAAACTGCAA 360 consensus_7029#1 ------------------------------------------------------------ consensus_7029#0 GACATAACGATGAGCACTTCGCGAAGCATACAAACTACAAATCGCAATCAACTAACTGAC 420 consensus_7029#1 ------------------------------------------------------------ consensus_7029#0 ACCTGAACCAAAATCAATTCACATACAGGCCTCACCAACATACTGCATGGCACAATGGGA 480 consensus_7029#1 --------------------------------------CAATCTCCCAGACGAGATCAGC 22 ** ** * * * ** * consensus_7029#0 CAAGTAAAGATGTTCATGAA-GCTGAGATCACTAAACCAGTGCACGGACCAAAAAGCAAA 539 consensus_7029#1 T--CTGGGAATGGATATGAAAGCCGTGGTCGCTTCACC----------TCGGGCACCAGA 70 * *** ***** ** * * ** ** *** * * ** * consensus_7029#0 CCGAACAGCTTAAAAAAAT-GACTGAAAAAATTGAATATTTCAGGTGACTGAAAACTGCA 598 consensus_7029#1 CCAGGTGGCTTCTGCTGTTTGTCTGTAACCTTCCCACATAGCA-----CCGCAAGCAGCG 125 ** **** * * *** ** * * ** ** * * ** * ** consensus_7029#0 ACTCCCTTCACGAAATTTCCAGCCAAAATCAGAACAAACAAGCACCAAATCGAACCAAGC 658 consensus_7029#1 -TGCAGTTCACCAGTGAGCTGCTTTGGATTTGAGCCATGGCTGAACCGGTAAAATCACAT 184 * ***** * * ** ** * * * * * ** ** consensus_7029#0 GAACCGAACCGAATCGAATCGAGCAACCATACCAGGAGACCCAAATCGACGAGCGCAGCC 718 consensus_7029#1 CTCCCCAATTCAGCTCACTCCACCATTGAACCCAGGAGACCCAAATCGACGAGCGCAGCC 244 ** ** * * ** * ** * ***************************** consensus_7029#0 CAAAACCCCGCGACTCCGAGCCGCTATGACACCGGCGGAGGCGCCGGCGGCAGGATGCGC 778 consensus_7029#1 CAAAACCCCGCGACTCCGAGCCGCTATGACACCGGCGG------------CAGGATGCGC 292 ************************************** ********** consensus_7029#0 TCGATTTGTGCGGCGACGGCTAGGGCAAAAGCGTGGAGGCGAGAGAGCATGGAACCCTAA 838 consensus_7029#1 TCGATTTGTGCGGCGACGGCTAGGGCAAAAGCGTGGAGGCGAGAGA-------------- 338 ********************************************** consensus_7029#0 TTTAGCCGCCGCACAAATCCCCCTCTTCGAATCATTAATAATACAGACAGAACGAGAGGG 898 consensus_7029#1 ------------------------------------------------------------ consensus_7029#0 GAATAAACGCGTGGTGAATCGCACGCGAGCCGACCCCCATCCCGTCAAAATCAAATCCAG 958 consensus_7029#1 ------------------------------------------------------------ consensus_7029#0 TCAACCACTCCGGAAAAAAGAATCTATCTGTCTAACCAAAAAAAAGGAAAACCACTGGAA 1018 consensus_7029#1 ------------------------------------------------------------ consensus_7029#0 TTTTAACCTAAATCCACCAACCCTCCTCCCCGTCTTAATCCCTCCGCGGATTAGCAATGC 1078 consensus_7029#1 ------------------------------------------------------------ consensus_7029#0 AAACCCCTCAAATAATAAATAACCGAGCAAGTAGCAATCTCCAGGAAATATTTTGATTGG 1138 consensus_7029#1 ------------------------------------------------------------ consensus_7029#0 CCGGGACGAACCGCTCGAGCCACTGGAGATCGTAGTCGTACCGTGCACGGAAGCGGAATC 1198 consensus_7029#1 ------------------------------------------------------------ consensus_7029#0 CACAGCTCCTGCTTGATCCCTCCTGCGCTTCCTCTTCCCCTCGTGGCGAGGATGATGATG 1258 consensus_7029#1 ------------------------------------------------------------ consensus_7029#0 ATGATGATGATGACGGCGACGACGACCGCGGCGATGATTCATTTACGAATTCTTTTTCTG 1318 consensus_7029#1 ------------------------------------------------------------ consensus_7029#0 CGGTTTTTTTTTCCT 1333 consensus_7029#1 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||