These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7047#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1246 fasta sequence [TGCACTTACAGCTGCAGCTAGCTTTGCCCAGTTTTGCTTAGCTTTTCTCTGCTTCCTTCGATCCCATCCATGTCCAGGTTGATGGCCGCCATGCTGCTCGGTGGCGCCCGCGTCGCCGGTAACACCACCACCGCCGTGATGGAGCTTCATCATCCGAGGCCGTCGTACTTCCTCCCTCCCCGGCCGCGGCTGGCGGCGGCGAGCTGGAGCCGCCTCCGCCTGCAGACCGCGCCGAGATCATCCCAGGCGTACGACAACTCGCCGGCGGACGACCGAAGGGACGTCGGGGACAGGTACAGGGACGCCGCGGAGGAGGCGAAGGAGGCCACCGGCGACGCCAAGGAGCGGGTGAAAGGGATGGCCGGGGAGGCCAAGGGCAGGGCGGCGGACATTGCCGGCAGGGCCAAGGACGAGACCAAGGACACGGCGTCGCGCGCGGCCGACGCGGCGTCGCGGGCGACGGACCGGGCGAAGCACGAGGCCGCCGACAAGGCGGCGGACGTGAAGGACCGCGCCAAGGACGCGGCGGACATGGCGCAGGGCACGGCGAGGGCGGTGAGGGACAAGACGGCGGAGACGGCGGAGGGCGCCATGGACAGGGCCGGCGAGGCCAAGGACAGGACAGTGGAAGGGACGAAGCACGCCGGCGAGAAGGTGGCGGAGATGACCAAGGAAGGGGCGAGCAAGGTGGTGGAGACGGCGCAGGCCATCGGCGAGAAGGCGAAGCAGGCGGCGCAGGGCGCGTGGGGCGCCACCAAGGAGGCGGCGCAGGGCGTCAAGGACACGGTCGCCGGCGGCGACGTCGACGCCGACGCCGCGATGAAGGAGCAGGACAGGATCGCGCAGGAGGAGAAGAAGAGGCAGGCCAGGGAGAAGGGCGCTGGCTTGCCTTAGGCTAAAACTGCATACTTGTTGCATGCTTATTTGTACTAAAAGCTTTTTTTTTTAGCTGAATTTTAGTC-GGTTCAGTTCTT-TTGGTTGAATAATGTTGGCAAACTTGAGCCTCCTAATGTCTGTAAGACTGTAACTGTAATGGAAAGGAACTTATTGAAGTTATTAGCCCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCGGGGGGGCCCCTTCCTGGGGGGGGGGGAGTTTTTTTAACCCCCGGGGGCTACCCCCT] [+] EMBL AK073109 [TGCACTTACAGCTGCAGCTAGCTTTGCCCAGTTTTGCTTAGCTTTTCTCTGCTTCCTTCGATCCCATCCATGTCCAGGTTGATGGCCGCCATGCTGCTCGGTGGCGCCCGCGTCGCCGGTAACACCACCACCGCCGTGATGGAGCTTCATCATCCGAGGCCGTCGTACTTCCTCCCTCCCCGGCCGCGGCTGGCGGCGGCGAGCTGGAGCCGCCTCCGCCTGCAGACCGCGCCGAGATCATCCCAGGCGTACGACAACTCGCCGGCGGACGACCGAAGGGACGTCGGGGACAGGTACAGGGACGCCGCGGAGGAGGCGAAGGAGGCCACCGGCGACGCCAAGGAGCGGGTGAAAGGGATGGCCGGGGAGGCCAAGGGCAGGGCGGCGGACATTGCCGGCAGGGCCAAGGACGAGACCAAGGACACGGCGTCGCGCGCGGCCGACGCGGCGTCGCGGGCGACGGACCGGGCGAAGCACGAGGCCGCCGACAAGGCGGCGGACGTGAAGGACCGCGCCAAGGACGCGGCGGACATGGCGCAGGGCACGGCGAGGGCGGTGAGGGACAAGACGGCGGAGACGGCGGAGGGCGCCATGGACAGGGCCGGCGAGGCCAAGGACAGGACAGTGGAAGGGACGAAGCACGCCGGCGAGAAGGTGGCGGAGATGACCAAGGAAGGGGCGAGCAAGGTGGTGGAGACGGCGCAGGCCATCGGCGAGAAGGCGAAGCAGGCGGCGCAGGGCGCGTGGGGCGCCACCAAGGAGGCGGCGCAGGGCGTCAAGGACACGGTCGCCGGCGGCGACGTCGACGCCGACGCCGCGATGAAGGAGCAGGACAGGATCGCGCAGGAGGAGAAGAAGAGGCAGGCCAGGGAGAAGGGCGCTGGCTTGCCTTAGGCTAAAACTGCATACTTGTTGCATGCTTATTTGTACTAAAAGCTTTTTTTTTTAGCTGAATTTTAGTC GGTTCAGTTCTT TTGGTTGAATAATGTTGGCAAACTTGAGCCTCCTAATGTCTGTAAGACTGTAACTGTAATGGAAAGGAACTTATTGAAGTTA ] [+] EMBL CF314457 [ GCGCAGGAGGAGAAGAAGAGGCAGGCCAGGGAGAAGGGCGCTGGCTTGCCTTAGGCTAAAACTGCATACTTGTTGCATGCTTATTTGTACTAAAAGCTTTTTTTTTTAGCTGAATTTTAGTCGGGTTCAGTTCTTNTTGGTTGAATAATGTTGGCAAACTTGAGCCTCCTAATGTCTGTAAGACTGTAACTGTAATGGAAAGGAACTTATT ] [+] EMBL CF309145 [ GTCTGTAAGACTGTAACTGTAATGGAAAGGAACTTATTGAAGTTATTAGCCCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCGGGGGGGCCCCTTCCTGGGGGGGGGGGAGTTTTTTTAACCCCCGGGGGCTACCCCCT] consensusID : consensus_7047#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 360 fasta sequence [CACGGCGGCGCCACGGGCGCGTGGGGCCGCCACCCAAGGAGCGCGGCGCCACGGGCGTCCAAGGACACCGGTCGCCGGCCGGCGACCGTCGACGCCGACGCCCGCGATGAAGGACGCAGGACAGGATCGCGCAGGAGGAGAAGAAGAGGCCAGCGCCCAGGGAGAAGGGCGCTGGCTTGCCTTAGGCTAAAACCTGCATACCTTGTTGCCATGCTTATTTGTACTAAAAGCTTTTTTTTAGCTGAATTTTAGTCGGTTCAGTTCTTTTGGTTGAATAATGTTGCAACTTGAGCCTCCTAATGTCTGTAAGACTGTAACTGTAATGGAAGACTTATTGAAGTTATTAGCACAAAGCCTTAG] [+] EMBL BI799534 [CACGGCGGCGCCACGGGCGCGTGGGGCCGCCACCCAAGGAGCGCGGCGCCACGGGCGTCCAAGGACACCGGTCGCCGGCCGGCGACCGTCGACGCCGACGCCCGCGATGAAGGACGCAGGACAGGATCGCGCAGGAGGAGAAGAAGAGGCCAGCGCCCAGGGAGAAGGGCGCTGGCTTGCCTTAGGCTAAAACCTGCATACCTTGTTGCCATGCTTATTTGTACTAAAAGCTTTTTTTTAGCTGAATTTTAGTCGGTTCAGTTCTTTTGGTTGAATAATGTTGCAACTTGAGCCTCCTAATGTCTGTAAGACTGTAACTGTAATGGAAGACTTATTGAAGTTATTAGCACAAAGCCTTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7047#0 TGCACTTACAGCTGCAGCTAGCTTTGCCCAGTTTTGCTTAGCTTTTCTCTGCTTCCTTCG 60 consensus_7047#1 ------------------------------------------------------------ consensus_7047#0 ATCCCATCCATGTCCAGGTTGATGGCCGCCATGCTGCTCGGTGGCGCCCGCGTCGCCGGT 120 consensus_7047#1 ------------------------------------------------------------ consensus_7047#0 AACACCACCACCGCCGTGATGGAGCTTCATCATCCGAGGCCGTCGTACTTCCTCCCTCCC 180 consensus_7047#1 ------------------------------------------------------------ consensus_7047#0 CGGCCGCGGCTGGCGGCGGCGAGCTGGAGCCGCCTCCGCCTGCAGACCGCGCCGAGATCA 240 consensus_7047#1 ------------------------------------------------------------ consensus_7047#0 TCCCAGGCGTACGACAACTCGCCGGCGGACGACCGAAGGGACGTCGGGGACAGGTACAGG 300 consensus_7047#1 ------------------------------------------------------------ consensus_7047#0 GACGCCGCGGAGGAGGCGAAGGAGGCCACCGGCGACGCCAAGGAGCGGGTGAAAGGGATG 360 consensus_7047#1 ------------------------------------------------------------ consensus_7047#0 GCCGGGGAGGCCAAGGGCAGGGCGGCGGACATTGCCGGCAGGGCCAAGGACGAGACCAAG 420 consensus_7047#1 ------------------------------------------------------------ consensus_7047#0 GACACGGCGTCGCGCGCGGCCGACGCGGCGTCGCGGGCGACGGACCGGGCGAAGCACGAG 480 consensus_7047#1 ------------------------------------------------------------ consensus_7047#0 GCCGCCGACAAGGCGGCGGACGTGAAGGACCGCGCCAAGGACGCGGCGGACATGGCGCAG 540 consensus_7047#1 ------------------------------------------------------------ consensus_7047#0 GGCACGGCGAGGGCGGTGAGGGACAAGACGGCGGAGACGGCGGAGGGCGCCATGGACAGG 600 consensus_7047#1 ------------------------------------------------------------ consensus_7047#0 GCCGGCGAGGCCAAGGACAGGACAGTGGAAGGGACGAAGCACGCCGGCGAGAAGGTGGCG 660 consensus_7047#1 ------------------------------------------------------------ consensus_7047#0 GAGATGACCAAGGAAGGGGCGAGCAAGGTGGTGGAGACGGCGCAGGCCATCGGCGAGAAG 720 consensus_7047#1 ------------------------------------------------------------ consensus_7047#0 GCGAAGCAGGCGGCGCAGGGCGCGTGGGGC-GCCACC-AAGGAG-GCGGCGCA--GGGCG 775 consensus_7047#1 -CACGGC-GGCGCCAC-GGGCGCGTGGGGCCGCCACCCAAGGAGCGCGGCGCCACGGGCG 57 * ** **** * * ************* ****** ****** ******* ***** consensus_7047#0 TC-AAGGACAC-GGTCGCCGGC-GGCGAC-GTCGACGCCGACGCC-GCGATGAAGGA-GC 829 consensus_7047#1 TCCAAGGACACCGGTCGCCGGCCGGCGACCGTCGACGCCGACGCCCGCGATGAAGGACGC 117 ** ******** ********** ****** *************** *********** ** consensus_7047#0 AGGACAGGATCGCGCAGGAGGAGAAGAAGAGGCAGGC---CAGGGAGAAGGGCGCTGGCT 886 consensus_7047#1 AGGACAGGATCGCGCAGGAGGAGAAGAAGAGGCCAGCGCCCAGGGAGAAGGGCGCTGGCT 177 ********************************* ** ******************** consensus_7047#0 TGCCTTAGGCTAAAAC-TGCATAC-TTGTTGC-ATGCTTATTTGTACTAAAAGCTTTTTT 943 consensus_7047#1 TGCCTTAGGCTAAAACCTGCATACCTTGTTGCCATGCTTATTTGTACTAAAAGCTTTTTT 237 **************** ******* ******* *************************** consensus_7047#0 TTTTAGCTGAATTTTAGTCGGTTCAGTTCTTTTGGTTGAATAATGTTGGCAAACTTGAGC 1003 consensus_7047#1 TT--AGCTGAATTTTAGTCGGTTCAGTTCTTTTGGTTGAATAATGTTGC--AACTTGAGC 293 ** ******************************************** ********* consensus_7047#0 CTCCTAATGTCTGTAAGACTGTAACTGTAATGGAAAGGAACTTATTGAAGTTATTAGCCC 1063 consensus_7047#1 CTCCTAATGTCTGTAAGACTGTAACTGTAATGGAA---GACTTATTGAAGTTATTAGC-- 348 *********************************** ******************* consensus_7047#0 TGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1123 consensus_7047#1 -ACAAAGCCTTAG----------------------------------------------- 360 **** * consensus_7047#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1183 consensus_7047#1 ------------------------------------------------------------ consensus_7047#0 AACCCCGGGGGGGCCCCTTCCTGGGGGGGGGGGAGTTTTTTTAACCCCCGGGGGCTACCC 1243 consensus_7047#1 ------------------------------------------------------------ consensus_7047#0 CCT 1246 consensus_7047#1 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||