Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7049 cluster # 7049       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7049#0 length = 1155 sequences # 4  

consensusID : consensus_7049#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1155
fasta sequence
                              [CCACCTTAAAGGAGAAATCATGAAGAGCAGTAGATTTGATTTTTTTGTTCCAAAGGTTGCGAAAATTGAAGTTACGCCGAAAAATGGATACTATGCTCGCCATGGCTTTAGTTATATCAAGAATGACATCCGTTCTATGTGCCGAGATGCATTAAGATATAAAGGTCGAAGTGACTTGGGAGATATGAAACAGATTGTCGTGGCCTTCATCCAGCTAGCAAAGAAACTTGAGAACCCAAGGTTGATTTCTGATAGAGATGGGACAGCAGTTCAGAAGGACAGTTCTGACATGAGTCAGTATTCTTCAGATCTGAAACTCAAAAAGAAACAGAGTAAAACTATGTCAGAAAGAAGGGGAGCAAACTGGACTACTGCTGGAGCAGATCCGTCATCTCGTGCATTTGACCGTGAAATCAAAAGAAGTCTTTCTAAATTAAAGAAAAGGGATATCGATTCTGGTAGTGAAACATCTGATGATGATGATGGCTACTCTGAAGGTGATGAGACTGAGAGTGAAACTACTGTTTCTGATACAGAGAGTGATCTTGATGTAAATTCGGGAGCATGGGATTTAAAGGGAAATGGTATGAAGTTATTTGAATCAAGCGAGTCTTTGACGGATGATCGTGGATGGGGTGCTCGCATGACAAAAGCAAGCCTTGTTCCCCCAGTGACTAGGAAGTATGAGGTTATTGAGAAGTACCTAATTGTAGCAGATGAGGAGGAAGTACTGAGAAAGATGCGGGTCGCTTTACCTGATGACTATTCAGAGAAACTGCTCTCGCAGAAGAACGGCACTGAAAATTTGGAACTACCAGAGGTTAAGGATTATCAACCTAGAAAAGTACCTGGGGATGAAGTTCTTGAGCAAGAAGTGTATGGAATAGATCCATATACACATAATCTCCTACTTGAAATGATGCCTACTGAACTTGATTGGCCATCCTCTGACAAACATACCTTTGTTGAAGAGTTGCTTCTGAACACCTTGAATAAGCAAGTGAGGCAGTTCACTGGTTCTGGAAATACTCCCATGGTTTACCCCCTTAAACCTGTAATTGAAGAAATCCAAAAGTCTGCAGAGGAGAGTGGTGACAGACGGACTTCAAAGATGTGCCTTGGAATGCTAAAGGCCATGAGGAACCACCCAGAATA]

[+] EMBL CB677742             [CCACCTTAAAGGAGAAATCATGAAGAGCAGTAGATTTGATTTTTTTGTTCCAAAGGTTGCGAAAATTGAAGTTACGCCGAAAAATGGATACTATGCTCGCCATGGCTTTAGTTATATCAAGAATGACATCCGTTCTATGTGCCGAGATGCATTAAGATATAAAGGTCGAAGTGACTTGGGAGATATGAAACAGATTGTCGTGGCCTTCATCCAGCTAGCAAAGAAACTTGAGAACCCAAGGTTGATTTCTGATAGAGATGGGACAGCAGTTCAGAAGGACAGTTCTGACATGAGTCAGTATTCTTCAGATCTGAAACTCAAAAAGAAACAGAGTAAAACTATGTCAGAAAGAAGGGGAGCAAACTGGACTACTGCTGGAGCAGATCCGTCATCTCGTGCATTTGACCGTGAAATCAAAAGAAGTCTTTCTAAATTAAAGAAAAGGGATATCGATTCTGGTAGTGAAACATCTGATGATGATGATGGCTACTCTGAAGGTGATGAGACTGAGAGTGAAACTACTGTTTCTGATACAGAGAGTGATCTTGATGTAAATTCGGGAGCATGGGATTTAAAGGGAAATGGTATGAAGTTATTTGAATCAAGCGAGTCTTTGACCGATGATCGTGGATGGGGTGCTCGCATGACAACAGCAAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB684482             [                                                                                                                                                                                                                                                                                                                                                                        AAACTCTTCTACTGCTGGAGCAGATCCGTCATCTCGTGCATTTGACCGTGAAATCAAAAGAAGTCTTTCTAAATTAAAGAAAAGGGATATCGATTCTGGTAGTGAAACATCTGATGATGATGATGGCTACTCTGAAGGTGATGAGACTGAGAGTGAAACTACTGTTTCTGATACAGAGAGTGATCTTGATGTAAATTCGGGAGCATGGGATTTAAAGGGAAATGGTATGAAGTTATTTGAATCAAGCGAGTCTTTGACGGATGATCGTGGATGGGGTGCTCGCATGACAAAAGCAAGCCTTGTTCCCCCAGTGACTAGGAAGTATGAGGTTATTGAGAAGTACCTAATTGTAGCAGATGAGGAGGAAGTACTGAGAAAGATGCGGGTCGCTTTACCTGATGACTATTCAGAGAAACTGCTCTCGCAGAAGAACGGCACTGAAAATTTGGAACTACCAGAGGTTAAGGATTATCAACCTAGAAAAGTACCTGGGGATGAAGTTCTTGAGCAAGAAGTGTATGGAATAGATCCATATACACATAATCTCCTACTTGAAATGATGCCTACTGAACTTGATTGGCCATCCTCTGACAAACATACCTTTGTTGAAGAGTTGCTTCTGAACACCTTGAATAAGCAAGTGAGGCAGTTCACTGGTTCTGGAAATACTCCCATGGTTTACCCCCTTAAACCTGTAATTGAAGAAATCCAAAAGTCTGCAGAGGAGAGTGGTGACAGACGGACTTCAAAGATGTGCCTTGGAATGCTAAAGGCCATGAGGAACCACCCAGAATA]
[+] EMBL CB641386             [                                                                                                                                                                                                                                                                                                                                                                              GACTACTGCTGGAGCAGATCCGTCATCTCGTGCATTTGACCGTGAAATCAAAAGAAGTCTTTCTAAATTAAAGAAAAGGGATATCGATTCTGGTAGTGAAACATCTGATGATGATGATGGCTACTCTGAAGGTGATGAGACTGAGAGTGAAACTACTGTTTCTGATACAGAGAGTGATCTTGATGTAAATTCGGGAGCATGGGATTTAAAGGGAAATGGTATGAAGTTATTTGAATCAAGCGAGTCTTTGACGGATGATCGTGGATGGGGTGCTCGCATGACAAAAGCAAGCCTTGTTCCCCCAGTGACTAGGAAGTATGAGGTTATTGAGAAGTACCTAATTGTAGCAGATGAGGAGGAAGTACTGAGAAAGATGCGGGTCGCTTTACCTGATGACTATTCAGAGAAACTGCTCTCGCAGAAGAACGGCACTGAAAATTTGGAACTACCAGAGGTTAAGGATTATCAACCTAGAAAAGTACCTGNGGATGAAGTTCTTGAGCAAGAAGTGTATGGAATAGATCCATATACACATAATCTCCTACTTGAAATGATGCCTACTGAACTTGATTGGCCATCCT                                                                                                                                                                                                                ]
[+] EMBL CB641131             [                                                                                                                                                                                                                                                                                                                                                                              GACTACTGCTGGCACATATCCTTCATCTCCTGCATTTGACCGTGAAATCAAAAGAAGTCTTTCTAAATTAAAGAAAAGGGATATCGATTCTGGTAGTGAAACATCTGATGATGATGATGGCTACTCTGAAGGTGATGATACTGACAGTGAAACTACTGTTTCTGATACAGAGAGTGATCTTGATGTAAATTCGGGAGCATGGGATTTAAAGGGAAATGGTATGAAGTTATTTGAATCAAGCGAGTCTTTGACGGATGATCGTGGATGGGGTGCTCGCATGACAAAAGCAAGCCTTGTTCCCCCAGTGACTACGAAGTATGAGGTTATTGAGAACTACCTAATTGTAGCAAATGAGGAGGAAGTACTGAGAAAGATGCGGGTCGCTTTACCTGATGACTATTCAAAGAAACTGCTCTCGCAGAAGAACGGCACTG                                                                                                                                                                                                                                                                                                                                                                   ]


>consensus_7049#0 CCACCTTAAAGGAGAAATCATGAAGAGCAGTAGATTTGATTTTTTTGTTCCAAAGGTTGC GAAAATTGAAGTTACGCCGAAAAATGGATACTATGCTCGCCATGGCTTTAGTTATATCAA GAATGACATCCGTTCTATGTGCCGAGATGCATTAAGATATAAAGGTCGAAGTGACTTGGG AGATATGAAACAGATTGTCGTGGCCTTCATCCAGCTAGCAAAGAAACTTGAGAACCCAAG GTTGATTTCTGATAGAGATGGGACAGCAGTTCAGAAGGACAGTTCTGACATGAGTCAGTA TTCTTCAGATCTGAAACTCAAAAAGAAACAGAGTAAAACTATGTCAGAAAGAAGGGGAGC AAACTGGACTACTGCTGGAGCAGATCCGTCATCTCGTGCATTTGACCGTGAAATCAAAAG AAGTCTTTCTAAATTAAAGAAAAGGGATATCGATTCTGGTAGTGAAACATCTGATGATGA TGATGGCTACTCTGAAGGTGATGAGACTGAGAGTGAAACTACTGTTTCTGATACAGAGAG TGATCTTGATGTAAATTCGGGAGCATGGGATTTAAAGGGAAATGGTATGAAGTTATTTGA ATCAAGCGAGTCTTTGACGGATGATCGTGGATGGGGTGCTCGCATGACAAAAGCAAGCCT TGTTCCCCCAGTGACTAGGAAGTATGAGGTTATTGAGAAGTACCTAATTGTAGCAGATGA GGAGGAAGTACTGAGAAAGATGCGGGTCGCTTTACCTGATGACTATTCAGAGAAACTGCT CTCGCAGAAGAACGGCACTGAAAATTTGGAACTACCAGAGGTTAAGGATTATCAACCTAG AAAAGTACCTGGGGATGAAGTTCTTGAGCAAGAAGTGTATGGAATAGATCCATATACACA TAATCTCCTACTTGAAATGATGCCTACTGAACTTGATTGGCCATCCTCTGACAAACATAC CTTTGTTGAAGAGTTGCTTCTGAACACCTTGAATAAGCAAGTGAGGCAGTTCACTGGTTC TGGAAATACTCCCATGGTTTACCCCCTTAAACCTGTAATTGAAGAAATCCAAAAGTCTGC AGAGGAGAGTGGTGACAGACGGACTTCAAAGATGTGCCTTGGAATGCTAAAGGCCATGAG GAACCACCCAGAATA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)