Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7111 cluster # 7111       Sequences # 4       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7111#0 length = 956 sequences # 4  
consensusID : consensus_7111#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 956
fasta sequence 
                              [CATGGACTGAGGAGTAGAAAGGGTGAATGTCTACTATGAAAGGGGATACAATGGCGGATCCATCTGGAAGGCTTTGCGAAAGGAAGTATACTCATTTGTGCTAATCATATATACTTTTATCGTTGTATGGTTTGTTGGTGGTCTCACAGTATTTCATCTTTATCTGATCAGTACTAATCAGACAACATATGAAAACTTCAGATACCACTACAACAAGGACAACCCCTACCGAAAGAGCATTGCAGCAAACTTTGTAGATGTGTTCTTCACCAAGATCCCTCCACCCCAGAACAATTTCCGTTCATGGGTAGGTGAGGGCGCACTGGAAGCTGGATTTTATACTCCATATATTGCGCTGGATTTGACTGATCCAAGGGAAAAGATTGATTCAGAGATGGGAAACAAGGATATACTCGTGGGGGGTATGCAGATCCCAACAGTGCTTCAGAACATAGACTATGGTTCCTTTGAAGATAATCCAGATGACAAGAACAGGAATGAAGATGATAGACTAGTGCCTTTTGCTTCAACTTGGGCACAACAAGCAAATGAAGGTGCTCGAACATCTGAAATAGCTACTGTAGAATATAAGGACGAAATAAGTGAAGATGGTGGTAAGGAAATTATTAGTTCAAACACAAGTTCAGAACAAACATCAATAGAAGCTAATGCAGCAGCATCTGAGGATGAAAGCAATGAGGACATTGCTGGAAAAAGTAACAGTTAAGATAGAAGTTCTACCCAAAATTT-GGGGATGTGAACTAATAGATCTGTATTACTCATCTAAATTGATAATCTGTTCATATACATGGCCATTATGAGTTGACATTATTCTTAGCATTACCCATGATAAATAAAAACAGAAAGTGAATGACTGTATGCCTCAGCCAAACTTTTTATAATGTATTATTTTACATCTAAAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF320123             [CATGGACTGAGGAGTAGAAAGGGTGAATGTCTACTATGAAAGGGGATACAATGGCGGATCCATCTGGAAGGCTTTGCGAAAGGAAGTATACTCATTTGTGCTAATCATATATACTTTTATCGTTGTATGGTTTGTTGGTGGTCTCACAGTATTTCATCTTTATCTGATCAGTACTAATCAGACAACATATGAAAACTTCAGATACCACTACAACAAGGACAACCCCTACCGAAAGAGCATTGCAGCAAACTTTGTAGATGTGTTCTTCACCAAGATCCCTCCACCCCAGAACAATTTCCGTTCATGGGTAGGTGAGGGCGCACTGGAAGCTGGATTTTATACTCCATATATTGCGCTGGATTTGACTGATCCAAGGGAAAAGATTGATTTAGAGATGGGAAACAAGGATATACTTGTTGGGGGTATTCAGATCCCAACAGTGCTTCAGAACATAGACTATGGTTCCTTTGAAGATAATCCAGATGACAAGAACAGGAATGAAGATGATAGACTAGTGCCTTTTGCTTCAACTTGGGCACAACAAGCAAATGAAGGTGCTCGAACATCTGAAATAGCTA                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CA761881             [                                                                                                                                                                                                                                                                                                                                                                                  CCAAGGGCAAAGATTGATTCAGAGATGGGAAACAAGGATATACTCGTGGGGGGTATGCAGATCCCAACAGTGCTTCAGAACATAGACTATGGTTCCTTTGAAGATAATCCAGATGCCAAGAACAGGAATGAAGATGATAGACTAGTGCCTTTTGCTTCAACTTGGGTACAACAAGCAAATGAAGGTGCTCGAACATCTGAAATAGCTACTGTAGAATATAAGGACGAAATAAGTGAAGATGGTGGTAAGGAAATTATTAGTTCAAACACAAGTTCAGAACAAACATCAATAGAAGCTAATGCAGCAGCATCTGAGGATGAAAGCAATGAGGACATTGCTGGAAAAAGTAACAGTTAAGATAGAAGTTCTACCCAAAATTT GGGGATGTGAACTAATAGATCTGTATTACTCATCTAAATTGATAATCTGTTCATATACATGGCCATTATGAGTTGACATTATTCTTAGCATTACCCATGATAAATAAAAACAGAAAGTGAATGACTGTATGCCTCAGCCAAACTTTTTATAATGTATTATTTTACATCTAAAAAAACCAAAAAAAAAAAAAAAAA           ]
[+] EMBL CA767097             [                                                                                                                                                                                                                                                                                                                                                                                                  ATTCAGAGATGGGAAACAAGGATATACTCGTGGGGGGTATGCAGATCCCAACAGTGCTTCAGAACATAGACTATGGTTCCTTTGAAGATAATCCAGATGACAAGAACAGGAATGAAGATGATAGACTAGTGCCTTTTGCTTCAACTTGGGTACAACAAGCAAATGAAGGTGCTCGAACATCTGAAATAGCTACTGTAGAATATAAGGACGAAATAAGTGAAGATGGTGGTAAGGAAATTATTAGTTCAAACACAAGTTCAGAACAAACATCAATAGAAGCTAATGCAGCAGCATCTGAGGATGAAAGCAATGAGGACATTGCTGGAAAAAGTAACAGTTAAGATAGAAGTTCTACCCAAAATTT GGGGATGTGAACTAATAGATCTGTATTACTCATCTAAATTGATAATCTGTTCATATACATGGCCATTATGAGTTGACATTATTCTTAGCATTACACATGATAAATAAAAACAGAAAGTGAATGACTGTATGCCTCAGCCAAACTTTTTATAATGTATTATTTTACATCTAAAAA                                ]
[-] EMBL CF320124             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TGAAGATAATCCAGATGCCAAGAACAGGAATGAAGATGATAGACTAGTGCCTTTTGCTTCAACTTGGGCACAACAAGCAAATGAAGGGGCTCGAACATTTGAAATAGCTACTGTAGAATATAAGGACGAAATAAGTGAAGATGGTGGTAAGGAAATTATTAGTTCAAACCCAAGTTCAGAACAAACATCAATAGAAGTTAATGCAGCAGCATTTGAGGATGAAAGCAATGAGGCCAATGCTGGAAAAAGTAACAGTTCAGATAGAAGTTTTACCCAAAATTTGGGGGATGTGAACTAA AGCTCTGTATTACTCATTTAAATTGATAATCTGTTCAAAAACATGGCCATTATGAGTTGACATTATTTTTAGCATTACCCATGATAAATAAAAACAGAAAATGAATGGCTGTATGCCTCAGCCAAAATTTTTAGAATGTATTAGTTTACGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_7111#0
CATGGACTGAGGAGTAGAAAGGGTGAATGTCTACTATGAAAGGGGATACAATGGCGGATC
CATCTGGAAGGCTTTGCGAAAGGAAGTATACTCATTTGTGCTAATCATATATACTTTTAT
CGTTGTATGGTTTGTTGGTGGTCTCACAGTATTTCATCTTTATCTGATCAGTACTAATCA
GACAACATATGAAAACTTCAGATACCACTACAACAAGGACAACCCCTACCGAAAGAGCAT
TGCAGCAAACTTTGTAGATGTGTTCTTCACCAAGATCCCTCCACCCCAGAACAATTTCCG
TTCATGGGTAGGTGAGGGCGCACTGGAAGCTGGATTTTATACTCCATATATTGCGCTGGA
TTTGACTGATCCAAGGGAAAAGATTGATTCAGAGATGGGAAACAAGGATATACTCGTGGG
GGGTATGCAGATCCCAACAGTGCTTCAGAACATAGACTATGGTTCCTTTGAAGATAATCC
AGATGACAAGAACAGGAATGAAGATGATAGACTAGTGCCTTTTGCTTCAACTTGGGCACA
ACAAGCAAATGAAGGTGCTCGAACATCTGAAATAGCTACTGTAGAATATAAGGACGAAAT
AAGTGAAGATGGTGGTAAGGAAATTATTAGTTCAAACACAAGTTCAGAACAAACATCAAT
AGAAGCTAATGCAGCAGCATCTGAGGATGAAAGCAATGAGGACATTGCTGGAAAAAGTAA
CAGTTAAGATAGAAGTTCTACCCAAAATTTGGGGATGTGAACTAATAGATCTGTATTACT
CATCTAAATTGATAATCTGTTCATATACATGGCCATTATGAGTTGACATTATTCTTAGCA
TTACCCATGATAAATAAAAACAGAAAGTGAATGACTGTATGCCTCAGCCAAACTTTTTAT
AATGTATTATTTTACATCTAAAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAA

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)