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Oryza sativa
cluster # 7139 cluster # 7139       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7139#0 length = 1067 sequences # 4  

consensusID : consensus_7139#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1067
fasta sequence
                              [TAAGCTGCTGGGTTGCTGCCTTGAGGTGGATATCCCAATGCTAGTGTATGAGTTCATCCCAAATGGAACATTATTTGATCTTATTCATGGCAAGAACCGTACGTTTCATATCCCTTTTAGTTCTCTCCTAAGAATCGTCAATGAAGCAGCTGAAGGGCTTGCATTTTTACATTCCTATGCAAACCCACCAATTTTGCATGGCGATGTGAAAACCTCTAACATCCTTCTTGATGAGAACTACATGGCAAAGGTGTCAGATTTTGGAGCCTCCATATTAGCACTAAGTGATGAAGACCAATTTGTGACAATGGTTCAAGGGACATGTGGCTATCTAGATCCGGAATATCTGCAAACATGCCGATTGACAGACAAGAGCGATGTTTACAGCTTTGNGTGTGGTCCTTTTGGAGGTCATGACTGGGCAGATGCCATTGAAATTTGAAGGTCCTGAGATTCAGAAAAGCTTGTCATCAAGTTTCCTACTGGCAATGAAGGAGAATAATCTTGAGGCCATGTTGGACAGTCAAATTAAAGATCATGAGAGCATGGAACTGCTAAGTGGGCTTGCAGACATAGCTAAGAAATGCTTAGACATGTGCAGTGACAATAGGCCATCAAT-GNAAGAGGTATCTNAGGAGCTTAGCAGACTACGAAAATTTTCAAAACA-CCCTTGGATACAACGTGATACTGAGATAGAGAGCTTTCTCAGTGGACCATC-AACTAGTAACC--TAGAAACTGAG--CACAGCTATCTCAGTGGACC-A-TCAAC--CAGTAACTTTGAAATCGAGCAC-AACACCGAGTA-TAGAAGGAAGGATGAAGAAATGCCCATAAACCCAAGCACTTCATACTTTATCCGGTGAAAACAAATTGTTACAAGATTGTACTCAAGCATTTCCACTTTCGTCCTTAACCTTATTCTGTCCAGTTCGCTGGTGATGTTTTATATTGCAATTAGGAATAACTTCTGTTTGGTTGCATAATTTGTCACTGTATATGCTTATGATAGTTGACCATGATTAAATCTATAGTGAAGTAACTATTATGCTATATACTTTTTTTTAAAAAAAAAA]

[+] EMBL CF310698             [TAAGCTGCTGGGTTGCTGCCTTGAGGTGGATATCCCAATGCTAGTGTATGAGTTCATCCCAAATGGAACATTATTTGATCTTATTCATGGCAAGAACCGTACGTTTCATATCCCTTTTAGTTCTCTCCTAAGAATCGTCAATGAAGCAGCTGAAGGGCTTGCATTTTTACATTCCTATGCAAACCCACCAATTTTGCATGGCGATGTGAAAACCTCTAACATCCTTCTTGATGAGAACTACATGGCAAAGGTGTCAGATTTTGGAGCCTCCATATTAGCACTAAGTGATGAAGACCAATTTGTGACAATGGTTCAAGGGACATGTGGCTATCTAGATCCGGAATATCTGCAAACATGCCGATTGACAGACAAGAGCGATGTTTACAGCTTTGNGTGTGGTCCTTTTGGAGGTCATGACTGGGCAGATGCCATTGAAATTTGAAGGTCCTGAGATTCAGAAAAGCTTGTCATCAAGTTTCCTACTGGCAATGAAGGAGAATAATCTTGAGGCCATGTTGGACAGTCAAATTAAAGATCATGAGAGCATGGAACTGCTAAGTGGGCTTGCAGACATAGCTAAGAAATGCTTAGACATGTGCAGTGACAATAGGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL OSC9501              [                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AAAAGCTTGTNATCAAGTTTCCTACTGGCAATGAAGGAGAATAATCTTGAGGCCATGTTGGACAGTCAAATTAAAGATCATGANAGCATGGNNCTGCTAAGTGGGCTTGNAGANATAGCTAAGANATGCTTAGACATGTGCAGTGNCAATAGGCCATCAATNGNAAGAGGTATCTNAGGAGCTTAGCAGACTACGAAAATTTTCAAAACA CCCTTGGATACAACGTGATACTGAGATAGAGAGCTTTCTCAGTGGACCATC AACTAGTAACC  TAGAAACTGAG  CACAGCTATCTCAGTGGACC A TCAAC  CANTAACTTTGAAATCGAGCAC AACACCGNGTA TAGAAGG                                                                                                                                                                                                                                                                     ]
[-] EMBL CF310699             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TGAGAGCATGGAACTGCTAAGTGGGCTTGCAGACATAGCTAAGAAATGCTTAGACATGTGCAGTGACAATAGGCCATCAAT GAAAGAGGTATCTGAGGAGCTTAGCAGACTACGAAAATTTTCAAAACACCCCTTGGATACAACGTGATACTGAGATAGAGAGCTTTCTCAGTGGACCATC AACTAGTAACC  TAGAAACTGAG  CACAGCTATCTCAGTGGACC A TCAAC  CAGTAACTTTGAAATCGAGCAC AACACCGAGTA TAGAAGGAAGGATGAAGAAATGCCCATAAACCCAAGCACTTCATACTTTATCCGGTGAAAACAAATTGTTACAAGATTGTACTCAAGCATTTCCACTTTCGTCCTTAACCTTATTCTGTCCAGTTCGCTGGTGATGTTTTATATTGCAATTAGGAATAACTTCTGTTTGGTTGCATAATTTGTCACTGTATATGCTTATGATAGTTGACCATGATTAAATCTATAGTGAAGTAACTATTATGCTATATACTTTTTTTTAAAAAAAAAA]
[+] EMBL AU162136             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ATCGAACTAGTAACCCTTAGAAACTGAGCNCACAGCTATCTCAGTGGACCNATTCAACCTCAGTAACTTTGAAATCGAGCACNAACACCGAGTATTAGAAGGAAGGATGAAGAAATGCCCATAAACCCAAGCACTTCATAC TTATCCGGTGAAAACAAATTGTTACAAGATTGTACTCAAGCATTTCCACTTTCGTCCTTAACCTTATTCTGTCCAGTTCGCTGGTGATGTTTTATATTGCAATTAGGAATAACTTCTGTTTGGTTGCATAATTTGTCACTGTATATGCTTATGATAGTTGACCATGATTAAATCTATAGTGAAGTAACTATTATGCTATATACTTTTTTTTAAAA      ]


>consensus_7139#0 TAAGCTGCTGGGTTGCTGCCTTGAGGTGGATATCCCAATGCTAGTGTATGAGTTCATCCC AAATGGAACATTATTTGATCTTATTCATGGCAAGAACCGTACGTTTCATATCCCTTTTAG TTCTCTCCTAAGAATCGTCAATGAAGCAGCTGAAGGGCTTGCATTTTTACATTCCTATGC AAACCCACCAATTTTGCATGGCGATGTGAAAACCTCTAACATCCTTCTTGATGAGAACTA CATGGCAAAGGTGTCAGATTTTGGAGCCTCCATATTAGCACTAAGTGATGAAGACCAATT TGTGACAATGGTTCAAGGGACATGTGGCTATCTAGATCCGGAATATCTGCAAACATGCCG ATTGACAGACAAGAGCGATGTTTACAGCTTTGNGTGTGGTCCTTTTGGAGGTCATGACTG GGCAGATGCCATTGAAATTTGAAGGTCCTGAGATTCAGAAAAGCTTGTCATCAAGTTTCC TACTGGCAATGAAGGAGAATAATCTTGAGGCCATGTTGGACAGTCAAATTAAAGATCATG AGAGCATGGAACTGCTAAGTGGGCTTGCAGACATAGCTAAGAAATGCTTAGACATGTGCA GTGACAATAGGCCATCAATGNAAGAGGTATCTNAGGAGCTTAGCAGACTACGAAAATTTT CAAAACACCCTTGGATACAACGTGATACTGAGATAGAGAGCTTTCTCAGTGGACCATCAA CTAGTAACCTAGAAACTGAGCACAGCTATCTCAGTGGACCATCAACCAGTAACTTTGAAA TCGAGCACAACACCGAGTATAGAAGGAAGGATGAAGAAATGCCCATAAACCCAAGCACTT CATACTTTATCCGGTGAAAACAAATTGTTACAAGATTGTACTCAAGCATTTCCACTTTCG TCCTTAACCTTATTCTGTCCAGTTCGCTGGTGATGTTTTATATTGCAATTAGGAATAACT TCTGTTTGGTTGCATAATTTGTCACTGTATATGCTTATGATAGTTGACCATGATTAAATC TATAGTGAAGTAACTATTATGCTATATACTTTTTTTTAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)