These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7143#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 616 fasta sequence [TTTTTTTTTTTTTTTTTCGACGTGATGTGCAAAAAGGTTTGATTTCTGTAGCTGTGGTGTATACAGTGTACAAAATGATCATTTCGAAACAGGGACAGCACTCAGGAGGGGAATCAAGCTTTTTCTTTTGCCGTTCGCGTGATGATATTGGCTTCGAGATGAGTTGCTTCATTTCTTGCCTTTCTTCTCTTCCTTCTTCTCCTCTTTCTTCTCCTCTTTCTTCTCTTCTTTCTTCTCTTCCTTCTTCTCTGGC-TTC-TTCTCT-TCCTT-GGCAGGTCCAACAGAAACGATGTCGATCTTGCCGATCTTCCTCAGCTTCTTCGCTATCTCGACGGTGTCCATGTCGCCAATGATGGTCATCTTGTTGTCCTTGAGGTCTGCAGCTATCGAATCAATACCGTAGATATCTGCGACGGCTTCGATCGCTTTCTGCTTCGTCTTTTCGTCAGTCATGGTTGGAACCTTGAGCACCACCTTCTGCTGAGCCATCTGAAGAAGTGTTGAAACTGTGGATATATCANCAGAGGGAAGGTTGGATCAGGGAGACAGATAGAAATGTGAGACGATTCTCATTCGTCGACTAAATGAGTAATTTATTTAACTTTTCATTTACNACAAA] [+] EMBL CA755864 [TTTTTTTTTTTTTTTTTCGACGTGATGTGCAAAAAGGTTTGATTTCTGTAGCTGTGGTGTATACAGTGTACAAAATGATCATTTCGAAACAGGGACAGCACTCAGGAGGGGAATCAAGCTTTTTCTTTTGCCGTTCGCGTGATGATATTGGCTTCGAGATGAGTTGCTTCATTTCTTGCCTTTCTTCTCTTCCTTCTTCTCCTCTTTCTTCTCCTCTTTCTTCTCTTCTTTCTTCTCTTCCTTCTTCTCTGGC TTC TTCTCT TCCTT GGCAGGTCCAACAGAAACGATGTCGATCTTGCCGATCTTCCTCAGCTTCTTCGCTATCTCGACGGTGTCCATGTCGCCAATGATGGTCATCTTGTTGTCCTTGAGGTCTGCAGCTATCGAATCAATACCGTAGATATCTGCGACGGCTTCGATCGCTTTCTGCTTCGTCTTTTCGTCAGTCATGGTTGGAACCTTGAGCACCACCTTCTGCTGAGCCATCTGAAGAAGTGTTGAAACTGTGGATATATCANCAGAGGGAAGGTTGGATCAGGGAGACAGATAGAAATGTGAGACGATTCTCATTCGTCGACTAAATGAGTAATTTATTTAACTTTTCATTTACNACAAA] [-] EMBL D43210 [ cccaTCCTTC AACTGGCTTTCTTTCNCTATCCTTGGGCAGGTCCAACAGAAACGATGTCGATCTTGCCGATCTTCCTCAGCTTCTTCGCTATCTCGACGGTGTCCATGTCGCCTATGATGGTCATCTTGTTGTCCTTGAGGTCTGCAGCTATCGAATCAATACCGTAGATATCTGCGACGGCTTCGATCGCTTTCTGCTTCGTCTTTTCGTCAGTCATGGTTGGAACCTTGAGCACCACCTT CTGAGCCATCTGAAGAAGTGTTGAAACTGTGGATATATCAg ] consensusID : consensus_7143#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 280 fasta sequence [GTAAATTGTGCATGGCAGCTAGCTATAGCTAACACGATGAGAAAACAACGTTCGACGTGATGTGCAAAAAGGTTTGATTTCTGTAGCTGTGGTGTATACAGTGTACAAAATGATCATTTCGAAACAGGGACAGCACTCAGGAGGGGAATCAAGCTTTTTCTTTTGCCGTTCGCGTGATGATATTGGCTTCGAGATGAGTTGCTTCATTTCTTGCCTTTCTTCTCTTCCTTCTTCTCCTCTTTCTTCTCCTCTTTCTTCTCTTCTTTCTTCTCTTCCTTCT] [-] EMBL CA754859 [GTAAATTGTGCATGGCAGCTAGCTATAGCTAACACGATGAGAAAACAACGTTCGACGTGATGTGCAAAAAGGTTTGATTTCTGTAGCTGTGGTGTATACAGTGTACAAAATGATCATTTCGAAACAGGGACAGCACTCAGGAGGGGAATCAAGCTTTTTCTTTTGCCGTTCGCGTGATGATATTGGCTTCGAGATGAGTTGCTTCATTTCTTGCCTTTCTTCTCTTCCTTCTTCTCCTCTTTCTTCTCCTCTTTCTTCTCTTCTTTCTTCTCTTCCTTCT] consensusID : consensus_7143#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 279 fasta sequence [CTTCTTCTTTCCTGGGAGGGTCACAGAAAACGAGGTCGATCTGCCGATCTTCTCAGTTTCTCCGGATCGCGAGGGTCCATGTCGCCTATGATGGTCATCTGTGTCCTTGAGTCTGCAGCTATCGAATCAATACGTAGATATCTGCGAGGTTCGATCGCTTTCTGTTCGTCTGTCGTCAGTCATGGTGGAACCTTGAGCACCACCTTCTGTGAGCCATCTGAAGAAGTGTTGAAACTGTGGATATATCAGAGAGGGAAGTGGATCAGGCGGACGCGTGGT] [-] EMBL BI800134 [CTTCTTCTTTCCTGGGAGGGTCACAGAAAACGAGGTCGATCTGCCGATCTTCTCAGTTTCTCCGGATCGCGAGGGTCCATGTCGCCTATGATGGTCATCTGTGTCCTTGAGTCTGCAGCTATCGAATCAATACGTAGATATCTGCGAGGTTCGATCGCTTTCTGTTCGTCTGTCGTCAGTCATGGTGGAACCTTGAGCACCACCTTCTGTGAGCCATCTGAAGAAGTGTTGAAACTGTGGATATATCAGAGAGGGAAGTGGATCAGGCGGACGCGTGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7143#0 TTTTTTTTTTTTTTTTTCGACGTGATGTGCAAAAAGGTTTGATTTCTGTAGCTGTGGTGT 60 consensus_7143#2 ------------------------------------------------------------ consensus_7143#1 ------------------------------------------------------------ consensus_7143#0 ATACAGTGTACAAAATGATCATTTCGAAACAGGGACAGCACTCAGGAGGGGAATCAAGCT 120 consensus_7143#2 ------------------------------------------------------------ consensus_7143#1 ------------------------------------------------------------ consensus_7143#0 TTTTCTTTTGCCGTTCGCGTGATGATATTGGCTTCGAGATGAGTTGCTTCATTTCTTGCC 180 consensus_7143#2 ------------------------------------------------------------ consensus_7143#1 ------------------------------------------------------------ consensus_7143#0 TTTCTTCTCTTCCTTCTTCTCCTCTTTCTTCTCCTCTTTCTTCTCTTCTTTCTTCTCTTC 240 consensus_7143#2 ------------------------------------------------------------ consensus_7143#1 ------------------------------------------------------------ consensus_7143#0 CTTCTTCTCTGGCTTCTTCTCTTCCTTGGCAG--GTCCAACAGAAACGATGTCGATCTTG 298 consensus_7143#2 --------------CTTCTTCTTTCCTGGGAG--GGTCACAGAAAACGAGGTCGATCT-G 43 consensus_7143#1 --------------GTAAATTGTGCATGGCAGCTAGCTATAGCTAACACGATGAGAA--A 44 * * * *** ** * *** * consensus_7143#0 CCGATCTTCCTCAGCTTCTTCGCTATCTCGACGGTGTCCATGTCGCCAATGATGGTCATC 358 consensus_7143#2 CCGATCTTC-TCAGTTTCTCCGG-ATCGCGAGGGT--CCATGTCGCCTATGATGGTCATC 99 consensus_7143#1 ACAACGTTCGACGTGATGTGCAAAAAGGTTTGATT---TCTGTAGC-TGTGGTG--TATA 98 * * *** * * * * * * *** ** ** ** ** consensus_7143#0 TTGTTGTCCTTGAGGTCTGCAGCTATCGAATCAATACCGTAGATATCTGCGACGGCTTCG 418 consensus_7143#2 TG--TGTCCTTGAG-TCTGCAGCTATCGAATCAATAC-GTAGATATCTGCGA--GGTTCG 153 consensus_7143#1 CA---GTGTACAAAATGATCA--TTTCGAAACAGGGA--CAGCACTCAGGAGGGGAATCA 151 ** * * ** * ***** ** ** ** * * ** consensus_7143#0 ATCGCTTTCTGCT-TCGTCTTTTCGTCAGTCATGGTTGGAACCTTGAGCACCACCTTCTG 477 consensus_7143#2 ATCGCTTTCTG-T-TCGTCTGT-CGTCAGTCATGGT-GGAACCTTGAGCACCACCTTCTG 209 consensus_7143#1 AGCTTTTTCTTTTGCCGTTCGCGTGATGATATTGGCTTCGAGAT-GAGTTGCTTCATTTC 210 * * ***** * *** * * *** * * *** * * * * consensus_7143#0 CTGAGCCATCTGAAGAAGTGTTGAAACTGTGGATATATCANCAGAGGGAAGGTTGGATCA 537 consensus_7143#2 -TGAGCCATCTGAAGAAGTGTTGAAACTGTGGATATATCAG-AGAGGGAAG--TGGATCA 265 consensus_7143#1 TTGCCTTTCTTCTCTTCCTTCTTCTCCTCTTTCTTCTCCTCTTTCTTCTCTTCTTTCTTC 270 ** * * * ** * * * * * consensus_7143#0 GGGAGACAGATAGAAATGTGAGACGATTCTCATTCGTCGACTAAATGAGTAATTTATTTA 597 consensus_7143#2 GGCGGACGCGTGGT---------------------------------------------- 279 consensus_7143#1 TCTTCCTTCT-------------------------------------------------- 280 consensus_7143#0 ACTTTTCATTTACNACAAA 616 consensus_7143#2 ------------------- consensus_7143#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||