Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7144 cluster # 7144       Sequences # 4       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7144#0 length = 1172 sequences # 4  
consensusID : consensus_7144#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1172
fasta sequence 
                              [TAGAAAATTGGGTTTCTTGTGCTCTCATGCATATGTATGGTCTTCTCCTGCTATCAACGAAACCAAGCCATCACCACCACGTCTCCTTACTGCGAAAACCGCCATGGAAGGAAGTTCTGCAAGCCAGGCCAAGGCCTTGTTCAAAGCCACTCTTCTTGGCCTGGCCATCCTATCCATGGTGACATGGGTGCCACACATGTATTCCTGCATTAAGATGTTCTTGGTTTCGGTCCCTTCCGCGGCTTCCACCCTCGCGACACCGAGGTGCCTGTTCATCTTCTCCAACATCATCGTCATCTTCCTCGCCAGCGAGTTAAAACTCTCCGAGGGGGAGAGCTTCGGCGAGTCTCCGATCCCGACCAATCATGGCTCTGATGATTCCATCAGATATAGGGTTGAAGCTTTCACTCTAACTACCAAGTCAAACGATGTGATTGTTAACCATGTTGTTGAAGAGCAAGTTATCACGGTAATTGTACATGATGACAGCCTGCAACAGCTAGATCAATGTGAACAAGTGGATGCTTCATCAACCATGTCCATGGACAAGGAATCGAGACGAGACAACAACAATAATAACTTAGCAATTGGTGCTAATGTTGGCAATAATGGAGAAAGTGAGGAAGTGGAAGAACAGGGAGGAGCAATATCACTAGGCAAGGTAATCGAGGAGGAAATGATTGAGGAGGAAGATGTTGGGTTGCCAACTGATGAGCTGAATCGTAGAGTGGAGGACTTCATTGCAAGGTTCAACATGGAGAGGCAGCTTGAGGCAAGGATGCTTGTCTGCTGCTACTAAATATATGTTTTGAGGCAAAGGATCCATTTACAGACCATGCTCATGAAATCGAATTAGAGCAAGTGTAAGGAAATTTGATGTGCTGCCTCTAAGATTGTTAATTAAATAGGATTATGTGATGAGTTTGAGAAGAGAAGTGATGAAAAAGAGAGAAGATGAGGCATCTCCCGTGCAAGAGGTAGCCTCTATATGTACACTATAACAAATATGATAGCACTAATTAGGGGTTTGTTTATTAGAGGTAACATGTTGTATATCTTGTCTATTAGTTTATGTGTATATGAAATAGATAAAATTAGAGGGAATATATAGTCACCTC-TATTATCAAACTTGCTTTTATTGTCCCTTAATCACTCTCTATGAATGAATGGAA]

[+] EMBL CF295965             [TAGAAAATTGGGTTTCTTGTGCTCTCATGCATATGTATGGTCTTCTCCTGCTATCAACGAAACCAAGCCATCACCACCACGTCTCCTTACTGCGAAAACCGCCATGGAAGGAAGTTCTGCAAGCCAGGCCAAGGCCTTGTTCAAAGCCACTCTTCTTGGCCTGGCCATCCTATCCATGGTGACATGGGTGCCACACATGTATTCCTGCATTAAGATGTTCTTGGTTTCGGTCCCTTCCGCGGCTTCCACCCTCGCGACACCGAGGTGCCTGTTCATCTTCTCCAACATCATCGTCATCTTCCTCGCCAGCGAGTTAAAACTCTCCGAGGGGGAGAGCTTCGGCGAGTCTCCGATCCCGACCAATCATGGCTCTGATGATTCCATCAGATATAGGGTTGAAGCTTTCACTCTAACTACCAAGTCAAACGATGTGATTGTTAACCATGTTGTTGAAGAGCAAGTTATCACGGTAATTGTACATGATGACAGCCTGCAACAGCTAGATCAATGTGAACAAGTGGATGCTTCATCAACCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AK068042             [          GGTTTCTTGTGCTCTCATGCATATGTATGGTCTTCTCCTGCTATCAACGAAACCAAGCCATCACCACCACGTCTCCTTACTGCGAAAACCGCCATGGAAGGAAGTTCTGCAAGCCAGGCCAAGGCCTTGTTCAAAGCCACTCTTCTTGGCCTGGCCATCCTATCCATGGTGACATGGGTGCCACACATGTATTCCTGCATTAAGATGTTCTTGGTTTCGGTCCCTTCCGCGGCTTCCACCCTCGCGACACCGAGGTGCCTGTTCATCTTCTCCAACATCATCGTCATCTTCCTCGCCAGCGAGTTAAAACTCTCCGAGGGGGAGAGCTTCGGCGAGTCTCCGATCCCGACCAATCATGGCTCTGATGATTCCATCAGATATAGGGTTGAAGCTTTCACTCTAACTACCAAGTCAAACGATGTGATTGTTAACCATGTTGTTGAAGAGCAAGTTAGCACGGTAATTGTACATGATGACAGCCTGCAACAGCTAGATCAATGTGAACAAGTGGATGCTTCATCAACCATGTCCATGGACAAGGAATCGAGACGAGACAACAACAATAATAACTTAGCAATTGGTGCTAATGTTGGCAATAATGGAGAAAGTGAGGAAGTGGAAGAACAGGGAGGAGCAATATCACTAGGCAAGGTAATCGAGGAGGAAATGATTGAGGAGGAAGATGTTGGGTTGCCAACTGATGAGCTGAATCGTAGAGTGGAGGACTTCATTGCAAGGTTCAACATGGAGAGGCAGCTTGAGGCAAGGATGCTTGTCTGCTGCTACTAAATATATGTTTTGAGGCAAAGGATCCATTTACAGACCATGCTCATGAAATCGAATTAGAGCAAGTGTAAGGAAATTTGATGTGCTGCCTCTAAGATTGTTAATTAAATAGGATTATGTGATGAGTTTGAGAAGAGAAGTGATGAAAAAGAGAGAAGATGAGGCATCTCCCGTGCAAGAGGTAGCCTCTATATGTACACTATAACAAATATGATAGCACTAATTAGGGGTTTGTTTATTAGAGGTAACATGTTGTATATCTTGTCTATTAGTTTATGTGTATATGAAATAGATAAAATTAGAGGGAATATATAGTCACCTC TATTATCAAACTTGCTTTTATTGTCCCTTAATCACTCTCTATGAATGAATGGAA]
[-] EMBL CA761123             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    cgAGACAAGGGGGGAGCAATATCACAAGGCAAGGTAGTCGAGGAGGAAATGATTGAGGAGGAAGATGTTGGGTTGCCAACTGATGAGCTGAATCGTAGAGTGGAGGACTTCATTGCAAGGTTCAACATGGAGAGGCAGCTTGAGGCAAGGATGCTTGTCTGCAGCTACTAAATATATGTTTTGAGGCAAAGGATCCATTTACAGACCATGCTCATGAAATAGAATTAGAGCAAGCGTAATGAAATTTGATGTGCTGCCTCTAAGATTGTTAATTAAATAGGATTATGTGATGAGTTTGAGAAGAGAAGTGATGAAAAAGGGAGAAGATGAGGCATCTCTCGTGCAAGAGGTAGCCTCTATATGTACACTATAACAAATATGATAGCATTAATTAGGGGTTTGTTTATTAGAGGTAACATGTGGTATATGTTGTCTATTAGTTTATGTGTATATGAAATAGATAAAATTAGAGGGAATATATAGTCCCCTCATATTATCAAACTTGCTTTTATaaaaaaa                          ]
[-] EMBL CF295966             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GCAAGTGTAAGGAAATTTGATGTGCTGCCTCTAAGATTGTTAATTAAATAGGATTATGTGATGAGTTTGAGAAGAGAAGTGATGAAAAAGAGAGAAGATGAGGCATCTCCCGTGCAAGAGGTAGCCTCTATATGTACACTATAACAAATATGATAGCACTAATTAGGGGTTTGTTTATTAGAGGTAACATGTTGTATATCTTGTCTATTAGTTTATGTGTATATGAAATAGATAAAATTAGAGGGAATATATAGTCACCTC TATTATCAAAaaaa                                        ]




>consensus_7144#0
TAGAAAATTGGGTTTCTTGTGCTCTCATGCATATGTATGGTCTTCTCCTGCTATCAACGA
AACCAAGCCATCACCACCACGTCTCCTTACTGCGAAAACCGCCATGGAAGGAAGTTCTGC
AAGCCAGGCCAAGGCCTTGTTCAAAGCCACTCTTCTTGGCCTGGCCATCCTATCCATGGT
GACATGGGTGCCACACATGTATTCCTGCATTAAGATGTTCTTGGTTTCGGTCCCTTCCGC
GGCTTCCACCCTCGCGACACCGAGGTGCCTGTTCATCTTCTCCAACATCATCGTCATCTT
CCTCGCCAGCGAGTTAAAACTCTCCGAGGGGGAGAGCTTCGGCGAGTCTCCGATCCCGAC
CAATCATGGCTCTGATGATTCCATCAGATATAGGGTTGAAGCTTTCACTCTAACTACCAA
GTCAAACGATGTGATTGTTAACCATGTTGTTGAAGAGCAAGTTATCACGGTAATTGTACA
TGATGACAGCCTGCAACAGCTAGATCAATGTGAACAAGTGGATGCTTCATCAACCATGTC
CATGGACAAGGAATCGAGACGAGACAACAACAATAATAACTTAGCAATTGGTGCTAATGT
TGGCAATAATGGAGAAAGTGAGGAAGTGGAAGAACAGGGAGGAGCAATATCACTAGGCAA
GGTAATCGAGGAGGAAATGATTGAGGAGGAAGATGTTGGGTTGCCAACTGATGAGCTGAA
TCGTAGAGTGGAGGACTTCATTGCAAGGTTCAACATGGAGAGGCAGCTTGAGGCAAGGAT
GCTTGTCTGCTGCTACTAAATATATGTTTTGAGGCAAAGGATCCATTTACAGACCATGCT
CATGAAATCGAATTAGAGCAAGTGTAAGGAAATTTGATGTGCTGCCTCTAAGATTGTTAA
TTAAATAGGATTATGTGATGAGTTTGAGAAGAGAAGTGATGAAAAAGAGAGAAGATGAGG
CATCTCCCGTGCAAGAGGTAGCCTCTATATGTACACTATAACAAATATGATAGCACTAAT
TAGGGGTTTGTTTATTAGAGGTAACATGTTGTATATCTTGTCTATTAGTTTATGTGTATA
TGAAATAGATAAAATTAGAGGGAATATATAGTCACCTCTATTATCAAACTTGCTTTTATT
GTCCCTTAATCACTCTCTATGAATGAATGGAA

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)