These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7156#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2115 fasta sequence [CGCCTTCCTTCCTCTTCCACCCAAGCGGCGCGGCGAGCAGCAGCCGGCGAGGCAGGATGAACCTGGCGCAGTGTCGCGTCCAGATTCATAGGCCGCGCCGACCTATAAGTACACTCGCGGGGCACGCTCTCTCTCTCTCCGAGGATTGCGGTTGCAAGCAGGATAAACGGCCACCGGTAGGCGTCGGCGGAGAGGAGAGGAGCAAGAGAGGGTGGGAAGGAGAGGCACCTCCGGATTAATTCCTCCGCGGGAGCTGGATATTGTGAGGGAATCGAGCGATCGAGTCGTCGTCGTCTTCCCCTGAGCAATCCGGACGCACGCGCCCCCCGCCTGTTCTGCTTCCATCCTCTCCACGCGGATCGGCGAGACAAGAATCAGGAAGCACTCAGCGATTGAGTCGTCATCTTTCCCTGAGCAACCCGGAGTGCCCCACCTATTCTGCTTCCTCTTCTCC-CACGGATCGTCGAGACAAGAAGCAAGAAGCATCCAGATATGGCACCAAGAGGAAAGCCTTGGAAGCATTGTTGCAACAAGTGCGACAAGAGCTTCCGTTCAGGGAATGCTCTTGGAGGCCACATGTCCTGCCACAGGAGTGTTGGTAATCAGCCAAAGAGCACGTCAAGCCCACCCACTGTTGTTGATCTGCACATGCCACTGCTGAGTTCCTGTGATGATAATCTTTTGCTTTTGCCCCCAGAAACACAATGCCAGATGTGCTCAAAGGTGTTCTCCACCCCCGGATCGCTGAGGGAGCACATGATGATGCACGGTGGGGAGAAGGTGGTGGTCAAGGCTGAGGAAGAAGCTGCCGGGCTGATTGAAGCACTGGGCATTGCTGATAGCATGCAAGATGTAATGGTGTTTTCTTCAGTGAAGCGTAAGCGATCATTCCGATCAAAGAGGCAGACACCAGCACTCAGTTTGGAGGAGATAGAGGCTGCAGATGCTCTCCTACTGCTTTCAGGGTGCTTTGACAAGACTTCAGCTTATGAGGATTGCTATCTGGGAGATATAGAAGACAGTAGCTTGAGATCCATTGTGCTGACAGAGGTTAACATGAATGCCGTGGATCGTTGTTCGGTTCGATCTGTTGGCTCCAAGGAGCCAATAAATGATAATAACTCAGGTTACAAGGATTGCTATGGACAAAGTGACAAGGAAAACTGTTTGATCGTTCCCAAGGAGGAGATGGATCCAAATGATTTTGATCATGAGCTGGTTAGAGATGCTGCTCTCAGGAAACCAAGAACCGACAATTCAGATGAGGAGATGAAGTTTGGTGATCTTCCAGCTGCTGCTATGAAGGACAACAGCCACCGTTGCAATACCTGCGGAAAGTCATTTGGATCAGGGCAGGCACTGGGAGGCCACATGCGACGTCATTATGTTCGGAAGTGCAATCGTCAACGGGGGGTTGCTGACCACGCTGGTTCTGTTCTTATGAAAGTGCAAAAGCTGAAGCTTAGATTGGACCCCATCTTGTTTGATGTCACACTTCCAGCTCTCACTGATGGAGACTGCTGCATTTCTGTGGGTGTGAAGCCTGAACCTCAGCTGTGGTGTGTCACGAGCAATCTTCAGTGAACCAATCCGGTGCTCGATGTGGTCTGAAACTCTCTGTTCTTTTGGTGAAATCTGGGGTGTTGTCTGAAACTGGTACAGTTCCTTGAGCTGTCTGTAGACTGTAGGTAGTTCATCAGCCAGGAAGCAAAAAAAACCCATGTTGTCTTCCGATAGATAGTCACAAGCTCACAATACTGATAGGAGTAGTTCTCTTGACTGACAAACTTCCATGGATAGCAAAGGCCAGGATCTTGAGTGATAGCTTGGTTACTGAACAGTGAAGCTGATTTCCATGTTGCATGCAATGCAATGGACGAGCTTGTCATTTTTTTTTTGTACCAACAATCTGTAAAATCAGTTTTGCTTTGCTTTCTGTAAATGTCTGTACCTTGATTCTTGAAAGGAATGCTGGTCAGAATGAGGTGAATTTTTGTACTAAATGGTGATATCCTCATTGTATGCACTGATCAGTCAATATTAAAGTACAGTGACATTTTTTTTCAAGAAAAAGAGAAGTGAGATAGGAGTAGTTCTCTTCAAAAAAAACAAAAA] [+] EMBL CF313885 [CGCCTTCCTTCCTCTTCCACCCAAGCGGCGCGGCGAGCAGCAGCCGGCGAGGCAGGATGAACCTGGCGCAGTGTCGCGTCCAGATTCATAGGCCGCGCCGACCTATAAGTACACTCGCGGGGCACGCTCTCTCTCTCTCCGAGGATTGCGGTTGCAAGCAGGATAAACGGCCACCGGTAGGCGTCGGCGGAGAGGAGAGGAGCAAGAGAGGGTGGGAAGGAGAGGCACCTCCGGATTAATTCCTCCGCGGGAGCTGGATATTGTGAGGGAATCGAGCGATCGAGTCGTCGTCGTCTTCCCCTGAGCAATCCGGACGCACGCGCCCCCCGCCTGTTCTGCTTCCATCCTCTCCACGCGGATCGGCGAGACAAGAATCAGGAAGCACTCAGCGATTGAGTCGTCATCTTTCCCTGAGCAACCCGGAGTGCCCCACCTATTCTGCTTCCTCTTCTCC CACGGATCGTCGAGACAAGAAGCAAGAAGCATCCAGATATGGCACCAAGAGGAAAGCCTTGGAAGCATTGTTGCAACAAGTGCGACAA ] [+] EMBL AK102141 [ CGGCGAGCAGCAGCCGGCGAGGCAGGATGAACCTGGCGCAGTGTCGCGTCCAGATTCATAGGCCGCGCCGACCTATAAGTACACTCGCGGGGCACGCTCTCTCTCTCTCCGAGGATTGCGGTTGCAAGCAGGATAAACGGCCACCGGTAGGCGTCGGCGGAGAGGAGAGGAGCAAGAGAGGGTGGGAAGGAGAGGCACCTCCGGATTAATTCCTCCGCGGGAGCTGGATATTGTGAGGGAATCGAGCGATCGAGTCGTCGTCGTCTTCCCCTGAGCAATCCGGACGCACGCGCCCCCCGCCTGTTCTGCTTCCATCTTCTCCACGCGGATCGGCGAGACAAGAATCAGGAAGCACCCAGCGATTGAGTCGTCATCTTTCCCTGAGCAACCCGGAGTGCCCCACCTATTCTGCTTCCTCTTCTCCACACGGATCGTCGAGACAAGAAGCAAGAAGCATCCAGATATGGCACCAAGAGGAAAGCCTTGGAAGCATTGTTGCAACAAGTGCGACAAGAGCTTCCGTTCAGGGAATGCTCTTGGAGGCCACATGTCCTGCCACAGGAGTGTTGGTAATCAGCCAAAGAGCACGTCAAGCCCACCCACTGTTGTTGATCTGCACATGCCACTGCTGAGTTCCTGTGATGATAATCTTTTGCTTTTGCCCCCAGAAACACAATGCCAGATGTGCTCAAAGGTGTTCTCCACCCCCGGATCGCTGAGGGAGCACATGATGATGCACGGTGGGGAGAAGGTGGTGGTCAAGGCTGAGGAAGAAGCTGCCGGGCTGATTGAAGCACTGGGCATTGCTGATAGCATGCAAGATGTAATGGTGTTTTCTTCAGTGAAGCGTAAGCGATCATTCCGATCAAAGAGGCAGACACCAGCACTCAGTTTGGAGGAGATAGAGGCTGCAGATGCTCTCCTACTGCTTTCAGGGTGCTTTGACAAGACTTCAGCTTATGAGGATTGCTATCTGGGAGATATAGAAGACAGTAGCTTGAGATCCATTGTGCTGACAGAGGTTAACATGAATGCCGTGGATCGTTGTTCGGTTCGATCTGTTGGCTCCAAGGAGCCAATAAATGATAATAACTCAGGTTACAAGGATTGCTATGGACAAAGTGACAAGGAAAACTGTTTGATCGTTCCCAAGGAGGAGATGGATCCAAATGATTTTGATCATGAGCTGGTTAGAGATGCTGCTCTCAGGAAACCAAGAACCGACAATTCAGATGAGGAGATGAAGTTTGGTGATCTTCCAGCTGCTGCTATGAAGGACAACAGCCACCGTTGCAATACCTGCGGAAAGTCATTTGGATCAGGGCAGGCACTGGGAGGCCACATGCGACGTCATTATGTTCGGAAGTGCAATCGTCAACGGGGGGTTGCTGACCACGCTGGTTCTGTTCTTATGAAAGTGCAAAAGCTGAAGCTTAGATTGGACCCCATCTTGTTTGATGTCACACTTCCAGCTCTCACTGATGGAGACTGCTGCATTTCTGTGGGTGTGAAGCCTGAACCTCAGCTGTGGTGTGTCACGAGCAATCTTCAGTGAACCAATCCGGTGCTCGATGTGGTCTGAAACTCTCTGTTCTTTTGGTGAAATCTGGGGTGTTGTCTGAAACTGGTACAGTTCCTTGAGCTGTCTGTAGACTGTAGGTAGTTCATCAGCCAGGAAGCAAAAAAAACCCATGTTGTCTTCCGATAGATAGTCACAAGCTCACAATACTGATAGGAGTAGTTCTCTTGACTGACAAACTTCCATGGATAGCAAAGGCCAGGATCTTGAGTGATAGCTTGGTTACTGAACAGTGAAGCTGATTTCCATGTTGCATGCAATGCAATGGACGAGCTTGTCATTTTTTTTTTGTACCAACAATCTGTAAAATCAGTTTTGCTTTGCTTTCTGTAAATGTCTGTACCTTGATTCTTGAAAGGAATGCTGGTCA ] [-] EMBL CF313886 [ TGTCACGAGCAATCTTCAGTGAACCAATCCGGTGCTCGATGTGGTCTGAAACTCTCTGTTCTTTTGGTGAAATCTGGGGTGTTGTCTGAAACTGGTACAGTTCCTTGAGCTGTCTGTAGACTGTAGGTAGTTCATCAGCCAGGAAGCAAAAAAAACCCATGTTGTCTTCCGATAGATAGTCACAAGCTCACAATACTGATAGGAGTAGTTCTCTTGACTGACAAACTTCCATGGATAGCAAAGGCCAGGATCTTGAGTGATAGCTTGGTTACTGAACAGTGAAGCTGATTTCCATGTTGCATGCAATGCAATGGACGAGCTTGTCATTTTTTTTTTGTACCAACAATCTGTAAAATCAGTTTTGCTTTGCTTTCTGTAAATGTCTGTACCTTGATTCTTGAAAGGAATGCTGGTCAGAATGAGGTGAATTTTTGTACTAAATGGTGATATCCTCATTGTATGCACTGATCAGTCAATATTAAAGTACAGTGACATTTTTTTTCAAGAAAAAGAGAAGTGAGATAGGAGTAGTTCTCTTCAAAAAAAACAAAAA] consensusID : consensus_7156#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 483 fasta sequence [AGAGGACGAGACAACGGGGGGTTGCTGACCGTGCTGGTTCTGTTCTTATGAAAGTGCAAAAGCTGAAGCTTAGATTGGACCCCATCTTGTTTGATGTCACACTTCCAGCTCTCACTGATGGAGACTGCTGCATTTCTGTGGGTGTGAAGCCTGAACCTCAGCTGTGGTGTGTCACGAGCAATCTTCAGTGAACCAATCCGGTGCTCGATGTGGTCTGAAACTCTCTGTTCTTTTGGTGAAATCTGGGGTGTTGTCTGAAACTGGTACAGTTCCTTGAGCTGTCTGTAGACTGTAGGTAGTTCATCAGCCAGGAAGCAAAAAAAAAACCCATGTCTTCCGATAGATAGTCACAAGCTCACAATACTGATAGGAGTAGTTCTCTTGACTGACAAACTTCCATGGATAGCAAAGGCCAGGATCTTGAGTGATAGCTTGGTTACTGAACAGTGAAGCTGATTTCCATGTTGCATGCAATGCAATGGA] [-] EMBL CA760914 [AGAGGACGAGACAACGGGGGGTTGCTGACCGTGCTGGTTCTGTTCTTATGAAAGTGCAAAAGCTGAAGCTTAGATTGGACCCCATCTTGTTTGATGTCACACTTCCAGCTCTCACTGATGGAGACTGCTGCATTTCTGTGGGTGTGAAGCCTGAACCTCAGCTGTGGTGTGTCACGAGCAATCTTCAGTGAACCAATCCGGTGCTCGATGTGGTCTGAAACTCTCTGTTCTTTTGGTGAAATCTGGGGTGTTGTCTGAAACTGGTACAGTTCCTTGAGCTGTCTGTAGACTGTAGGTAGTTCATCAGCCAGGAAGCAAAAAAAAAACCCATGTCTTCCGATAGATAGTCACAAGCTCACAATACTGATAGGAGTAGTTCTCTTGACTGACAAACTTCCATGGATAGCAAAGGCCAGGATCTTGAGTGATAGCTTGGTTACTGAACAGTGAAGCTGATTTCCATGTTGCATGCAATGCAATGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7156#0 CGCCTTCCTTCCTCTTCCACCCAAGCGGCGCGGCGAGCAGCAGCCGGCGAGGCAGGATGA 60 consensus_7156#1 ------------------------------------------------------------ consensus_7156#0 ACCTGGCGCAGTGTCGCGTCCAGATTCATAGGCCGCGCCGACCTATAAGTACACTCGCGG 120 consensus_7156#1 ------------------------------------------------------------ consensus_7156#0 GGCACGCTCTCTCTCTCTCCGAGGATTGCGGTTGCAAGCAGGATAAACGGCCACCGGTAG 180 consensus_7156#1 ------------------------------------------------------------ consensus_7156#0 GCGTCGGCGGAGAGGAGAGGAGCAAGAGAGGGTGGGAAGGAGAGGCACCTCCGGATTAAT 240 consensus_7156#1 ------------------------------------------------------------ consensus_7156#0 TCCTCCGCGGGAGCTGGATATTGTGAGGGAATCGAGCGATCGAGTCGTCGTCGTCTTCCC 300 consensus_7156#1 ------------------------------------------------------------ consensus_7156#0 CTGAGCAATCCGGACGCACGCGCCCCCCGCCTGTTCTGCTTCCATCCTCTCCACGCGGAT 360 consensus_7156#1 ------------------------------------------------------------ consensus_7156#0 CGGCGAGACAAGAATCAGGAAGCACTCAGCGATTGAGTCGTCATCTTTCCCTGAGCAACC 420 consensus_7156#1 ------------------------------------------------------------ consensus_7156#0 CGGAGTGCCCCACCTATTCTGCTTCCTCTTCTCCCACGGATCGTCGAGACAAGAAGCAAG 480 consensus_7156#1 ------------------------------------------------------------ consensus_7156#0 AAGCATCCAGATATGGCACCAAGAGGAAAGCCTTGGAAGCATTGTTGCAACAAGTGCGAC 540 consensus_7156#1 ------------------------------------------------------------ consensus_7156#0 AAGAGCTTCCGTTCAGGGAATGCTCTTGGAGGCCACATGTCCTGCCACAGGAGTGTTGGT 600 consensus_7156#1 ------------------------------------------------------------ consensus_7156#0 AATCAGCCAAAGAGCACGTCAAGCCCACCCACTGTTGTTGATCTGCACATGCCACTGCTG 660 consensus_7156#1 ------------------------------------------------------------ consensus_7156#0 AGTTCCTGTGATGATAATCTTTTGCTTTTGCCCCCAGAAACACAATGCCAGATGTGCTCA 720 consensus_7156#1 ------------------------------------------------------------ consensus_7156#0 AAGGTGTTCTCCACCCCCGGATCGCTGAGGGAGCACATGATGATGCACGGTGGGGAGAAG 780 consensus_7156#1 ------------------------------------------------------------ consensus_7156#0 GTGGTGGTCAAGGCTGAGGAAGAAGCTGCCGGGCTGATTGAAGCACTGGGCATTGCTGAT 840 consensus_7156#1 ------------------------------------------------------------ consensus_7156#0 AGCATGCAAGATGTAATGGTGTTTTCTTCAGTGAAGCGTAAGCGATCATTCCGATCAAAG 900 consensus_7156#1 ------------------------------------------------------------ consensus_7156#0 AGGCAGACACCAGCACTCAGTTTGGAGGAGATAGAGGCTGCAGATGCTCTCCTACTGCTT 960 consensus_7156#1 ------------------------------------------------------------ consensus_7156#0 TCAGGGTGCTTTGACAAGACTTCAGCTTATGAGGATTGCTATCTGGGAGATATAGAAGAC 1020 consensus_7156#1 ------------------------------------------------------------ consensus_7156#0 AGTAGCTTGAGATCCATTGTGCTGACAGAGGTTAACATGAATGCCGTGGATCGTTGTTCG 1080 consensus_7156#1 ------------------------------------------------------------ consensus_7156#0 GTTCGATCTGTTGGCTCCAAGGAGCCAATAAATGATAATAACTCAGGTTACAAGGATTGC 1140 consensus_7156#1 ------------------------------------------------------------ consensus_7156#0 TATGGACAAAGTGACAAGGAAAACTGTTTGATCGTTCCCAAGGAGGAGATGGATCCAAAT 1200 consensus_7156#1 ------------------------------------------------------------ consensus_7156#0 GATTTTGATCATGAGCTGGTTAGAGATGCTGCTCTCAGGAAACCAAGAACCGACAATTCA 1260 consensus_7156#1 ------------------------------------------------------------ consensus_7156#0 GATGAGGAGATGAAGTTTGGTGATCTTCCAGCTGCTGCTATGAAGGACAACAGCCACCGT 1320 consensus_7156#1 ------------------------------------------------------------ consensus_7156#0 TGCAATACCTGCGGAAAGTCATTTGGATCAGGGCAGGCACTGGGAGGCCACATGCGACGT 1380 consensus_7156#1 ------------------------------------------------------------ consensus_7156#0 CATTATGTTCGGAAGTGCAATCGTCAACGGGGGGTTGCTGACCACGCTGGTTCTGTTCTT 1440 consensus_7156#1 -------------AGAGGACGAGACAACGGGGGGTTGCTGACCGTGCTGGTTCTGTTCTT 47 ** * * * ******************* *************** consensus_7156#0 ATGAAAGTGCAAAAGCTGAAGCTTAGATTGGACCCCATCTTGTTTGATGTCACACTTCCA 1500 consensus_7156#1 ATGAAAGTGCAAAAGCTGAAGCTTAGATTGGACCCCATCTTGTTTGATGTCACACTTCCA 107 ************************************************************ consensus_7156#0 GCTCTCACTGATGGAGACTGCTGCATTTCTGTGGGTGTGAAGCCTGAACCTCAGCTGTGG 1560 consensus_7156#1 GCTCTCACTGATGGAGACTGCTGCATTTCTGTGGGTGTGAAGCCTGAACCTCAGCTGTGG 167 ************************************************************ consensus_7156#0 TGTGTCACGAGCAATCTTCAGTGAACCAATCCGGTGCTCGATGTGGTCTGAAACTCTCTG 1620 consensus_7156#1 TGTGTCACGAGCAATCTTCAGTGAACCAATCCGGTGCTCGATGTGGTCTGAAACTCTCTG 227 ************************************************************ consensus_7156#0 TTCTTTTGGTGAAATCTGGGGTGTTGTCTGAAACTGGTACAGTTCCTTGAGCTGTCTGTA 1680 consensus_7156#1 TTCTTTTGGTGAAATCTGGGGTGTTGTCTGAAACTGGTACAGTTCCTTGAGCTGTCTGTA 287 ************************************************************ consensus_7156#0 GACTGTAGGTAGTTCATCAGCCAGGAAGCAAAAAAAACCCATGTTGTCTTCCGATAGATA 1740 consensus_7156#1 GACTGTAGGTAGTTCATCAGCCAGGAAGCAAAAAAAAAACCCAT-GTCTTCCGATAGATA 346 ************************************* * * *************** consensus_7156#0 GTCACAAGCTCACAATACTGATAGGAGTAGTTCTCTTGACTGACAAACTTCCATGGATAG 1800 consensus_7156#1 GTCACAAGCTCACAATACTGATAGGAGTAGTTCTCTTGACTGACAAACTTCCATGGATAG 406 ************************************************************ consensus_7156#0 CAAAGGCCAGGATCTTGAGTGATAGCTTGGTTACTGAACAGTGAAGCTGATTTCCATGTT 1860 consensus_7156#1 CAAAGGCCAGGATCTTGAGTGATAGCTTGGTTACTGAACAGTGAAGCTGATTTCCATGTT 466 ************************************************************ consensus_7156#0 GCATGCAATGCAATGGACGAGCTTGTCATTTTTTTTTTGTACCAACAATCTGTAAAATCA 1920 consensus_7156#1 GCATGCAATGCAATGGA------------------------------------------- 483 ***************** consensus_7156#0 GTTTTGCTTTGCTTTCTGTAAATGTCTGTACCTTGATTCTTGAAAGGAATGCTGGTCAGA 1980 consensus_7156#1 ------------------------------------------------------------ consensus_7156#0 ATGAGGTGAATTTTTGTACTAAATGGTGATATCCTCATTGTATGCACTGATCAGTCAATA 2040 consensus_7156#1 ------------------------------------------------------------ consensus_7156#0 TTAAAGTACAGTGACATTTTTTTTCAAGAAAAAGAGAAGTGAGATAGGAGTAGTTCTCTT 2100 consensus_7156#1 ------------------------------------------------------------ consensus_7156#0 CAAAAAAAACAAAAA 2115 consensus_7156#1 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||