These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7174#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1172 fasta sequence [ACTAATCGATCACCGCACTATACACAATACGACCATTAGCTATTACTAGCTAGCTATATATCCCTCCCTTGTTTCTTTCGAGCAAGAGCGATGGAAACGGCGCCGGCCGCGAACGGTTGTAGTGGCGGCCGCCGGCTGCAGGAAGAAGAGCCCGCAGCTCGGTGGTGCGCGGTGACCGGTGGCCGCGGCTTCATGGCGAGGCACCTCGTGGCGGCGCTGCTCCGCTCCGGCGAGTGGCGCGTGCGGGTCACCGACCTCGCGCCGGCGATCACCCTTGACCCCGTCGAGGAGAAGGGGCTCCTCGGCGAGGCCCTCCGCGACGGCCGCGCCGTCTATGACTCCGTCAATGTTTGCGACATAACGCAGTTGACCAAAGCTTTTCAAGGGGTGGAAGTTGTTTTTCAC-ACAGCTGCTGCAGACCCTGACATCAACGACTTCCAACTACATTACAAGGTCAATGTTGAAGGGACAAAGAATGTTATTGATGCTTGTGTAACGTGCAAGGTTAAAAGGCTGATATACACCAGTTCCAGTGGTGTTGTATTTGACGGAGTTCATGGCCTTTTTGATGTAGATGAATCAATGCCATACCCAAACAAGTTTCCTGATGCATATGCACAAAGCAAGGCAGAAGCAGAGAAGTTAGTGAGAAATTCCAACGGCATATGTGAACTTCTAACTTGTTCCATACGTCCTGGTAGCATTTTTGGCCCTGGTGACACCATTGTACCACATTTACTTTCCCACTGGAGAACGATGTTTATTATCGGCGATGGAATGAATTGTGATGATTTTGTATATGTTGAAAATGTGGTACATGGCCACATTTGTGCTGAGAAAACTCTCTCGACTAAAGAGGGTTCAAAGATAAGTGGAGGCAAGAATGTGTGAATTCATTTTGCTTCGACCATATCTAAGACCTCATACATGGAGCAAGTTCTATTGCTATTGAAGATGTAAAATTTATTTGACATGGATGATAACCAATGGTCGATGGCAATGATGTCTACACATATAAGTTTGATGTATTTTTTTTACAAATGGCTAAGTATTGTAATCTTGTTGGGAACAATATTGATTCTTATTGGAGAATGGGCTTCCACTTGTTGCAGTCAACATAATTGTAATATATATCTGTGAGATTTTTATTGCTATATCTCTTTATGCAAAAA] [+] EMBL AK099537 [ACTAATCGATCACCGCACTATACACAATACGACCATTAGCTATTACTAGCTAGCTATATATCCCTCCCTTGTTTCTTTCGAGCAAGAGCGATGGAAACGGCGCCGGCCGCGAACGGTTGTAGTGGCGGCCGCCGGCTGCAGGAAGAAGAGCCCGCAGCTCGGTGGTGCGCGGTGACCGGTGGCCGCGGCTTCATGGCGAGGCACCTCGTGGCGGCGCTGCTCCGCTCCGGCGAGTGGCGCGTGCGGATCACCGACCTCGCGCCGGCGATCACCCTTGACCCCGTCGAGGAGAAGGGGCTCCTCGGCGAGGCCCTCCGCGACGGCCACGCCGTCTATGACTCCGTCAATGTTTGCGACATAACGCAGTTGACCAAAGCTTTTCAAGGGGTGGAAGTTGTTTTTCAC ACAGCTGCTGCAGACCCTGACATCAACGACTTCCAACTACATTACAAGGTCAATGTTGAAGGGACAAAGAATGTTATTGATGCTTGTGTAACGTGCAAGGTTAAAAGGCTGATATACACCAGTTCCAGTGGTGTTGTATTTGACGGAGTTCATGGCCTTTTTGATGTAGATGAATCAATGCCATACCCAAACAAGTTTCCTGATGCATATGCACAAAGCAAGGCAGAAGCAGAGAAGTTAGTGAGAAATTCCAACGGCATATGTGAACTTCTAACTTGTTCCATACGTCCTGGTAGCATTTTTGGCCCTGGTGACACCATTGTACCACATTTACTTTCCCACTGGAGAACGATGTTTATTATCGGCGATGGAATGAATTGTGATGATTTTGTATATGTTGAAAATGTGGTACATGGCCACATTTGTGCTGAGAAAACTCTCTCGACTAAAGAGGGTTCAAAGATAAGTGGAGGCAAGAATGTGTGAATTCATTTTGCTTCGACCATATCTAAGACCTCATACATGGAGCAAGTTCTATTGCTATTGAAGATGTAAAATTTATTTGACATGGATGATAACCAATGGTCGATGGCAATGATGTCTACACATATAAGTTTGATGTATTTTTTTTACAAATGGCTAAGTATTGTAATCTTGTTGGGAACAATATTGATTCTTATTGGAGAATGGGCTTCCACTTGTTGCAGTCAACATAATTGTAATATATATCTGTGAGATTTTTATTGCTATATCTCTTTATGCAAAAA] [+] EMBL BF430534 [ TAGCTAGCTATATATCCCTCCCTTGTTTCTTTCGAGCAAGAGCGATGGAAACGGCGCCGGCCGCGAACGGTTGTAGTGGCGGCCGCCGGCTGCAGGAAGAAGAGCCCGCAGCTCGGTGGTGCGCGGTGACCGGTGGCCGCGGCTTCATGGCGAGGCACCTCGTGGCGGCGCTGCTCCGCTCCGGCGAGTGGCGCGTGCGGGTCACCGACCTCGCGCCGAAGATCACCCTTGACCCCGTCGAGGAGAAGGGGCTCCTCGGCGAGGCCCTCCGCGACGGCCGCGCCGTCTATGACTCCGGCAATGTTTGCGACATAACGCAGTTGACCAAAGCTTTTCAAGGGGTGGAAGTTGTTTTTCAC ACAGCTGCTGCAGACCCTGACATCAACGACTTCCAACTACATTACAAGGTCAATGTTGAAGGGACAAAGAATGTTATTGATGCTTGTGTAACGTGCAAGGTTAAAAGGCTGATATACACCAGTTCCAGTGGTGTTGTATTTGACGGAGTTCACGGCCTTTTTGATGTAGATGAATCAATGCCATACCCAAACAAGTTTCCTGATGCATATGCACAAAGCAAGGCAGAAGCAGAGAAGTTAGTGAGAAATTCCAACGGCATATGTGAACTTCTAACTTGTTCCATACGTCCTGGTAGCATTTTTGG ] [+] EMBL CB965557 [ AGGAAGAAGAGCCCGCAGCTCGGTGGTGCGCGGTGACCGGTGGCCGCGGCTTCATGGCGAGGCACCTCGTGGCGGCGCTGCTCCGCTCCGGCGAGTGGCGCGTGCGGGTCACCGACCTCGCGCCGGCGATCACCCTTGACCCCGTCGAGGAGAAGGGGCTCCTCGGCGAGGCCCTCCGCGACGGCCGCGCCGTCTATGACTCCGTCAATGTTTGCGACATAACGCAGTTGACCAAAGCTTTTCAAGGGGTGGAAGTTGTATTTCACGACAGCTGCTGCAGACCCTGACATCAACGACTTCCAACTACATTACAAGGTCAATGTTGAAGGGACAAAGAATGTTATTGATGCTTGTGTAACGTGCAAGGTTAAAAGGCTGATATACACCAGTTCCAGTGGTGTTGTATTTGACGGAGTTCATGGCCTTATTGATGTAGATGAATCAATGACATAGCCAAACAAGTTTCCTGATGCATATGCACAAAGCAAGGCAGAAGCAGAGAAGTTAGTGAGAAATT CAACGGg ] consensusID : consensus_7174#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 793 fasta sequence [ACGACTTCCAACTACATTACAAGGTCAATGTTGAAGGGACAAAGAATGTTATTGATGCTTGTGTAACGTGCAAGGTTAAAAGGCTGATATACACCAGTTCCAGTGGTGTTGTATTTGACGGAGTTCATGGCCTTTTTGATGTAGATGAATCAATGCCATACCCAAACAAGTTTCCTGATGCATATGCACAAAGCAAGGCAGAAGCAGAGAAGTTAGTGAGAAATTCCAACGGCATATGTGAACTTCTAACTTGTTCCATACGTCCTGGTAGCATTTTTGGCCCTGGTGACACCATTGTACCACATTTACTTTCCCACTGGAGAACGATGTTTATTATCGGCGATGGAATGAATTGTGATGATTTTGTATATGTTGAAAATGTGGTACATGGCCACATTTGTGCTGAGAAAACTCTCTCGACTAAAGAGGGTTCAAAGATAAGTGGAGGCAAGGTATATCACTATTATTGAATTGCACTAGTTTCACTGCTGATAAATTTTCATGGTGCATTTAACTTTCTCTAGGCTTACTTCATAACTAATATGGAGCCTATGAACTTGTGGGACTTTCTTTATATGCTTTTAGAAGAACTTGGATATAAAAGGTGATGCTTCTTCCTAGATATCATACATATAACCTAAAGTATATTCTTAGCTTCTAAAATATGCAGTCTCCATACACTCTAATTGATGTAATATTGAAGTTGGCAATATAAATTAGAAGGATAGTTGTCTATGGATGTATTGATCATGCAAATTGTTTGATTCCTTATGTTTTATAAAAGTTGGCCACT] [-] EMBL CB656847 [ACGACTTCCAACTACATTACAAGGTCAATGTTGAAGGGACAAAGAATGTTATTGATGCTTGTGTAACGTGCAAGGTTAAAAGGCTGATATACACCAGTTCCAGTGGTGTTGTATTTGACGGAGTTCATGGCCTTTTTGATGTAGATGAATCAATGCCATACCCAAACAAGTTTCCTGATGCATATGCACAAAGCAAGGCAGAAGCAGAGAAGTTAGTGAGAAATTCCAACGGCATATGTGAACTTCTAACTTGTTCCATACGTCCTGGTAGCATTTTTGGCCCTGGTGACACCATTGTACCACATTTACTTTCCCACTGGAGAACGATGTTTATTATCGGCGATGGAATGAATTGTGATGATTTTGTATATGTTGAAAATGTGGTACATGGCCACATTTGTGCTGAGAAAACTCTCTCGACTAAAGAGGGTTCAAAGATAAGTGGAGGCAAGGTATATCACTATTATTGAATTGCACTAGTTTCACTGCTGATAAATTTTCATGGTGCATTTAACTTTCTCTAGGCTTACTTCATAACTAATATGGAGCCTATGAACTTGTGGGACTTTCTTTATATGCTTTTAGAAGAACTTGGATATAAAAGGTGATGCTTCTTCCTAGATATCATACATATAACCTAAAGTATATTCTTAGCTTCTAAAATATGCAGTCTCCATACACTCTAATTGATGTAATATTGAAGTTGGCAATATAAATTAGAAGGATAGTTGTCTATGGATGTATTGATCATGCAAATTGTTTGATTCCTTATGTTTTATAAAAGTTGGCCACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7174#0 ACTAATCGATCACCGCACTATACACAATACGACCATTAGCTATTACTAGCTAGCTATATA 60 consensus_7174#1 ------------------------------------------------------------ consensus_7174#0 TCCCTCCCTTGTTTCTTTCGAGCAAGAGCGATGGAAACGGCGCCGGCCGCGAACGGTTGT 120 consensus_7174#1 ------------------------------------------------------------ consensus_7174#0 AGTGGCGGCCGCCGGCTGCAGGAAGAAGAGCCCGCAGCTCGGTGGTGCGCGGTGACCGGT 180 consensus_7174#1 ------------------------------------------------------------ consensus_7174#0 GGCCGCGGCTTCATGGCGAGGCACCTCGTGGCGGCGCTGCTCCGCTCCGGCGAGTGGCGC 240 consensus_7174#1 ------------------------------------------------------------ consensus_7174#0 GTGCGGGTCACCGACCTCGCGCCGGCGATCACCCTTGACCCCGTCGAGGAGAAGGGGCTC 300 consensus_7174#1 ------------------------------------------------------------ consensus_7174#0 CTCGGCGAGGCCCTCCGCGACGGCCGCGCCGTCTATGACTCCGTCAATGTTTGCGACATA 360 consensus_7174#1 ------------------------------------------------------------ consensus_7174#0 ACGCAGTTGACCAAAGCTTTTCAAGGGGTGGAAGTTGTTTTTCACACAGCTGCTGCAGAC 420 consensus_7174#1 ------------------------------------------------------------ consensus_7174#0 CCTGACATCAACGACTTCCAACTACATTACAAGGTCAATGTTGAAGGGACAAAGAATGTT 480 consensus_7174#1 ----------ACGACTTCCAACTACATTACAAGGTCAATGTTGAAGGGACAAAGAATGTT 50 ************************************************** consensus_7174#0 ATTGATGCTTGTGTAACGTGCAAGGTTAAAAGGCTGATATACACCAGTTCCAGTGGTGTT 540 consensus_7174#1 ATTGATGCTTGTGTAACGTGCAAGGTTAAAAGGCTGATATACACCAGTTCCAGTGGTGTT 110 ************************************************************ consensus_7174#0 GTATTTGACGGAGTTCATGGCCTTTTTGATGTAGATGAATCAATGCCATACCCAAACAAG 600 consensus_7174#1 GTATTTGACGGAGTTCATGGCCTTTTTGATGTAGATGAATCAATGCCATACCCAAACAAG 170 ************************************************************ consensus_7174#0 TTTCCTGATGCATATGCACAAAGCAAGGCAGAAGCAGAGAAGTTAGTGAGAAATTCCAAC 660 consensus_7174#1 TTTCCTGATGCATATGCACAAAGCAAGGCAGAAGCAGAGAAGTTAGTGAGAAATTCCAAC 230 ************************************************************ consensus_7174#0 GGCATATGTGAACTTCTAACTTGTTCCATACGTCCTGGTAGCATTTTTGGCCCTGGTGAC 720 consensus_7174#1 GGCATATGTGAACTTCTAACTTGTTCCATACGTCCTGGTAGCATTTTTGGCCCTGGTGAC 290 ************************************************************ consensus_7174#0 ACCATTGTACCACATTTACTTTCCCACTGGAGAACGATGTTTATTATCGGCGATGGAATG 780 consensus_7174#1 ACCATTGTACCACATTTACTTTCCCACTGGAGAACGATGTTTATTATCGGCGATGGAATG 350 ************************************************************ consensus_7174#0 AATTGTGATGATTTTGTATATGTTGAAAATGTGGTACATGGCCACATTTGTGCTGAGAAA 840 consensus_7174#1 AATTGTGATGATTTTGTATATGTTGAAAATGTGGTACATGGCCACATTTGTGCTGAGAAA 410 ************************************************************ consensus_7174#0 ACTCTCTCGACTAAAGAGGGTTCAAAGATAAGTGGAGGCAAGAATGTGTGAATTCATTTT 900 consensus_7174#1 ACTCTCTCGACTAAAGAGGGTTCAAAGATAAGTGGAGGCAAGG-TATATCACTATTATTG 469 ****************************************** * * * * * ** consensus_7174#0 GCTTCGACCATATCTAAGACCTCATACATGGAGCAAGTTCTATTGCTATTGAAGATGTAA 960 consensus_7174#1 AATTGCACTA-GTTTCACTGCTGATAAATTTTCATGGTGCATTTAACTTTCTCTAGGCTT 528 ** ** * * * * ** *** ** ** * ** ** * * consensus_7174#0 AATTTAT--TTGACATGGA---TGATAACCAATGGTCGATGGCAATGATGTCTACACATA 1015 consensus_7174#1 ACTTCATAACTAATATGGAGCCTATGAACTTGTGGGACTTTCTTTATATGCTTTTAGA-A 587 * ** ** * * ***** * *** *** * *** * * * * consensus_7174#0 TAAGTTTGATGTATTTTTTT-TACAAATGGCTAAGTATTGTAATCTTGTTGGGAACAATA 1074 consensus_7174#1 GAACTTGGATATAAAAGGTGATGCTTCTTCCTAGATATCATACATATAACCTAAAGTATA 647 ** ** *** ** * * * * *** *** ** * ** *** consensus_7174#0 TTGATTCTTATTGGAGAATG-GGCTTCCACTTGTTGCAGTCAACATAATT---------G 1124 consensus_7174#1 TTCTTAGCTTCTAAAATATGCAGTCTCCATACACTCTAATTGATGTAATATTGAAGTTGG 707 ** * * * * *** * **** * * * * **** * consensus_7174#0 TAATATATATCTGTGAGATTTTTATTGCTATATCTCTT---TATGCAAAAA--------- 1172 consensus_7174#1 CAATATAAATTAGAAGGATAGTTGTCTATGGATGTATTGATCATGCAAATTGTTTGATTC 767 ****** ** * *** ** * * ** * ** ******* consensus_7174#0 -------------------------- consensus_7174#1 CTTATGTTTTATAAAAGTTGGCCACT 793 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||