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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7181#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1648 fasta sequence
[TTCATAATGAGATTTGTGAGAGGATGAGTACCAACATTCAACAACAATGGCATCATCATCCTTGGAAGCCTACCTCGTACGGCTGTCCGGCGCCGACGCCCCGGACGGACAAGTACACCACCCACCCGGACACGAAGCACCACCGCACCACCTGCCCCGCCACCGCCACCGCCGCCTCACTTCGCCGGCGGAAGCCGTCCACCGTGCACATCACCACCCCGTTGAAGGTCTCCGCGCCGGCGTCCACGTGCCTCTCGACGCGCCGCGCGCGCGTCCCGAACCGGCCGTCCATGATCCGCCTCGCCATCTCCTCCCGCCGCACCGCCCAGTCCGCGCCCTGCCGCCCGAGGTGGTAGCTCACGTGGACGGGCGGCGGCGGCGGCGGCGTCGTGCGCGGTGCGTCCCTCGCCGGGCTGTCCCACTCGGCGACCACGTAGAGGACGTGCTCCGGCAGCGCCGCCACCGATGCCGGCTCGTCGCCGTATCCGGCGGCCATCCACTCCGGCTGCTCGTACCGGGACGGCTGGCTGCAGTAGTGCGCGTCCCACGCTGGGAGGTGGTCGCCGCCGCCGTCGTCCTGCGTCATGGCCTGCAGGCGGTGGAAGCTCCCGAAGGCGGCGGCGGAGGCGAAGCGGAAGTGCGGCGGCAGCGCGTCCATGGAGGACAGAGCGAGCGCCATGACGTCAGCGCTCTCAGAGAGGTCGAGCTCCACGAACAGCTCCAGCTTCTCGCCGGTGCCGCCGCCGTCCGCGTACAGGAACACGACGTGCGCGCGCGGGCGGCGCCAAGGTGATGTGAGGTCCGGGAACGCGAACGCGTGCGCCGTGGCGCCCGGCGACGCCGGCGGCTTGACGGAGAAGCTCACCGCTCTCCGCGCGAGCAGCGACGCCGCGACCGGCTGGAACGGCACAAACCGCTTGGCGCGGCCGCCGCTCTCGACGAGCTTCACGAAGTCGCCGACGCCGTCCGCCAGCCGCTCGAACCGCCGCACGGTGCCGCCGCTCAGCCGCTGCTCGTCTCCGCCGCCGAAGGCGAAG-AGCTTCTTGCCGGCGGCCCGAGCAACGCGCCTCGGAAACCAAAGGCGGCGCGCATCATCATCGGCGACACACAGGCGCCGCCGCCGCCGCCGCCTGTACTCCCGCGGGACGCACTCGCCCTCGTCGGCGGCGCGCTTGAGCTTGTCGCGCCACCGCACGAGCGGGCGGTTGGTGATGTGCCAGCCGTCGGCCTCCTCGACGGCGGCCTGAATCCTGAGCAGCGCCACCTCCATCCTCTCCTCGTCATGCTCGGCTCCATCGCCGGCGGCCACCTCCTCCTCACCGCGGCTGATGAGGTACGAGCATATCCGGCCGACGGCCTCGCCGACGACCGCCGAGCCGACGATCTCCACCACCGACGGTCGCTGCATATTCTTCGCTTACAAGTACTCCAACTATGGTGGTCTCTACGCACATGGTCATGTCAATATTCCAAAAGTTTTGACAAAATTACACCGAAAGATAAACAATGTATTCATGAGTAGTGTGAAACTGAAATCTTACATGTTTTGGATTATTATTAATTATATTTGATTTGCATGGGGTTAAGTTTAACCCTTTCATTGTCGATGGATGACCTAAAGATCCAAGAAATAATATTCTTATGTATT]
[+] EMBL AK070697 [TTCATAATGAGATTTGTGAGAGGATGAGTACCAACATTCAACAACAATGGCATCATCATCCTTGGAAGCCTACCTCGTACGGCTGTCCGGCGCCGACGCCCCGGACGGACAAGTACACCACCCACCCGGACACGAAGCACCACCGCACCACCTGCCCCGCCACCGCCACCGCCGCCTCACTTCGCCGGCGGAAGCCGTCCACCGTGCACATCACCACCCCGTTGAAGGTCTCCGCGCCGGCGTCCACGTGCCTCTCGACGCGCCGCGCGCGCGTCCCGAACCGGCCGTCCATGATCCGCCTCGCCATCTCCTCCCGCCGCACCGCCCAGTCCGCGCCCTGCCGCCCGAGGTGGTAGCTCACGTGGACGGGCGGCGGCGGCGGCGGCGTCGTGCGCGGTGCGTCCCTCGCCGGGCTGTCCCACTCGGCGACCACGTAGAGGACGTGCTCCGGCAGCGCCGCCACCGATGCCGGCTCGTCGCCGTATCCGGCGGCCATCCACTCCGGCTGCTCGTACCGGGACGGCTGGCTGCAGTAGTGCGCGTCCCACGCTGGGAGGTGGTCGCCGCCGCCGTCGTCCTGCGTCATGGCCTGCAGGCGGTGGAAGCTCCCGAAGGCGGCGGCGGAGGCGAAGCGGAAGTGCGGCGGCAGCGCGTCCATGGAGGACAGAGCGAGCGCCATGACGTCAGCGCTCTCAGAGAGGTCGAGCTCCACGAACAGCTCCAGCTTCTCGCCGGTGCCGCCGCCGTCCGCGTACAGGAACACGACGTGCGCGCGCGGGCGGCGCCAAGGTGATGTGAGGTCCGGGAACGCGAACGCGTGCGCCGTGGCGCCCGGCGACGCCGGCGGCTTGACGGAGAAGCTCACCGCTCTCCGCGCGAGCAGCGACGCCGCGACCGGCTGGAACGGCACAAACCGCTTGGCGCGGCCGCCGCTCTCGACGAGCTTCACGAAGTCGCCGACGCCGTCCGCCAGCCGCTCGAACCGCCGCACGGTGCCGCCGCTCAGCCGCTGCTCGTCTCCGCCGCCGAAGGCGAAG AGCTTCTTGCCGGCGGCCCGAGCAACGCGCCTCGGAAACCAAAGGCGGCGCGCATCATCATCGGCGACACACAGGCGCCGCCGCCGCCGCCGCCTGTACTCCCGCGGGACGCACTCGCCCTCGTCGGCGGCGCGCTTGAGCTTGTCGCGCCACCGCACGAGCGGGCGGTTGGTGATGTGCCAGCCGTCGGCCTCCTCGACGGCGGCCTGAATCCTGAGCAGCGCCACCTCCATCCTCTCCTCGTCATGCTCGGCTCCATCGCCGGCGGCCACCTCCTCCTCACCGCGGCTGATGAGGTACGAGCATATCCGGCCGACGGCCTCGCCGACGACCGCCGAGCCGACGATCTCCACCACCGACGGTCGCTGCATATTCTTCGCTTACAAGTACTCCAACTATGGTGGTCTCTACGCACATGGTCATGTCAATATTCCAAAAGTTTTGACAAAATTACACCGAAAGATAAACAATGTATTCATGAGTAGTGTGAAACTGAAATCTTACATGTTTTGGATTATTATTAATTATATTTGATTTGCATGGGGTTAAGTTTAACCCTTTCATTGTCGATGGATGACCTAAAGATCCAAGAAATAATATTCTTATGTATT]
[+] EMBL BI809746 [ ACCGGGACGGCTGGCT CAGTAGTGCGCGTCCCACGCTGGGAGGTGGT TCC CC CCCTCGTCCTGCGTCATGGCCTGCAGGCGGTGGAAGCTCCCGAA GC GCGGCGGAGGCGAA CGGAAGT C GC GCAGCGCGTCCATGGAGGACAGAGCGAGCGCCATGACGTCAGCGCTCTCAGAGAGGTCGAGCTCCACGAACAGCTCCAGCTTCTCGCCGGTTCC CCCCCCTCCGCGTACAGGGACACGACGTGCGCGC C GGCGGCGCCACGGTGATGTGAGGTCCGGGAACGCGAACGCGTGC CCGTGGCGCCCGGCGACGCC GCGGCTTGACGGAGAAGCTCACCGCTCTCCGCGCGAGCAGCGACGCCGCGACCGGCTGGAACGGCACGAA ]
[+] EMBL AU162208 [ TCTCGACGAGCTTCACGAAGTCGCCGACGCCGTCCGCCAGCCGCTCGAACCGCCGCACGGTGCCGCCGCTCAGCCGCTGCTCGTCTCCGCCGCCGAAGG AAAGNAGCTTCTTGCCGGCGGCCCGAGCAACGCGCCTCGGAAACCAAAGGCGGCGCGCATCATCATCGGCGACACACAGGCGCCGCCGCCGCCGCCGCCTGTACTCCCGCAGGACGCACTCGCCCTCGTCGGCGGCGCGCTTGAGCTTGTCGCGCCACCGCACGAGCGGGCGGTTGGTGAT ]
consensusID : consensus_7181#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 423 fasta sequence
[CAACCNCACGATCGGCGGTGGTGATGTGCCAGCCGTCGGCTTCTTCGACGGCGGCNTGAATCCTGAGCAGCGCCACTCCATCCTCTCCTCGTCATGCTCGGCTCCATCGCCGGCGGCCACCTCCTCCTCACCGCGGCTGATGAGGTACGAGCATATCCGGCCGACGGCCTCGCCGACGACCNCCGAGCCGACGATCTCCACCACCGACGGTCGCTGCATATTCTTCGCTTACAAGTACTCCAACTATGGTGGTCTCTACGCACATGGTCATGTCAATATTCCAAAAGTTTTGACAAAATTACACCGAAAGATAAACAATGTATTCATGAGTAATGTGAAACTGAAATCTTACATGTTTTGGATTATTATTAATTATATTTGATTTGCATGCGGTTAAGTTTAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL C99116 [CAACCNCACGATCGGCGGTGGTGATGTGCCAGCCGTCGGCTTCTTCGACGGCGGCNTGAATCCTGAGCAGCGCCACTCCATCCTCTCCTCGTCATGCTCGGCTCCATCGCCGGCGGCCACCTCCTCCTCACCGCGGCTGATGAGGTACGAGCATATCCGGCCGACGGCCTCGCCGACGACCNCCGAGCCGACGATCTCCACCACCGACGGTCGCTGCATATTCTTCGCTTACAAGTACTCCAACTATGGTGGTCTCTACGCACATGGTCATGTCAATATTCCAAAAGTTTTGACAAAATTACACCGAAAGATAAACAATGTATTCATGAGTAATGTGAAACTGAAATCTTACATGTTTTGGATTATTATTAATTATATTTGATTTGCATGCGGTTAAGTTTAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7181#0 TTCATAATGAGATTTGTGAGAGGATGAGTACCAACATTCAACAACAATGGCATCATCATC 60
consensus_7181#1 ------------------------------------------------------------
consensus_7181#0 CTTGGAAGCCTACCTCGTACGGCTGTCCGGCGCCGACGCCCCGGACGGACAAGTACACCA 120
consensus_7181#1 ------------------------------------------------------------
consensus_7181#0 CCCACCCGGACACGAAGCACCACCGCACCACCTGCCCCGCCACCGCCACCGCCGCCTCAC 180
consensus_7181#1 ------------------------------------------------------------
consensus_7181#0 TTCGCCGGCGGAAGCCGTCCACCGTGCACATCACCACCCCGTTGAAGGTCTCCGCGCCGG 240
consensus_7181#1 ------------------------------------------------------------
consensus_7181#0 CGTCCACGTGCCTCTCGACGCGCCGCGCGCGCGTCCCGAACCGGCCGTCCATGATCCGCC 300
consensus_7181#1 ------------------------------------------------------------
consensus_7181#0 TCGCCATCTCCTCCCGCCGCACCGCCCAGTCCGCGCCCTGCCGCCCGAGGTGGTAGCTCA 360
consensus_7181#1 ------------------------------------------------------------
consensus_7181#0 CGTGGACGGGCGGCGGCGGCGGCGGCGTCGTGCGCGGTGCGTCCCTCGCCGGGCTGTCCC 420
consensus_7181#1 ------------------------------------------------------------
consensus_7181#0 ACTCGGCGACCACGTAGAGGACGTGCTCCGGCAGCGCCGCCACCGATGCCGGCTCGTCGC 480
consensus_7181#1 ------------------------------------------------------------
consensus_7181#0 CGTATCCGGCGGCCATCCACTCCGGCTGCTCGTACCGGGACGGCTGGCTGCAGTAGTGCG 540
consensus_7181#1 ------------------------------------------------------------
consensus_7181#0 CGTCCCACGCTGGGAGGTGGTCGCCGCCGCCGTCGTCCTGCGTCATGGCCTGCAGGCGGT 600
consensus_7181#1 ------------------------------------------------------------
consensus_7181#0 GGAAGCTCCCGAAGGCGGCGGCGGAGGCGAAGCGGAAGTGCGGCGGCAGCGCGTCCATGG 660
consensus_7181#1 ------------------------------------------------------------
consensus_7181#0 AGGACAGAGCGAGCGCCATGACGTCAGCGCTCTCAGAGAGGTCGAGCTCCACGAACAGCT 720
consensus_7181#1 ------------------------------------------------------------
consensus_7181#0 CCAGCTTCTCGCCGGTGCCGCCGCCGTCCGCGTACAGGAACACGACGTGCGCGCGCGGGC 780
consensus_7181#1 ------------------------------------------------------------
consensus_7181#0 GGCGCCAAGGTGATGTGAGGTCCGGGAACGCGAACGCGTGCGCCGTGGCGCCCGGCGACG 840
consensus_7181#1 ------------------------------------------------------------
consensus_7181#0 CCGGCGGCTTGACGGAGAAGCTCACCGCTCTCCGCGCGAGCAGCGACGCCGCGACCGGCT 900
consensus_7181#1 ------------------------------------------------------------
consensus_7181#0 GGAACGGCACAAACCGCTTGGCGCGGCCGCCGCTCTCGACGAGCTTCACGAAGTCGCCGA 960
consensus_7181#1 ------------------------------------------------------------
consensus_7181#0 CGCCGTCCGCCAGCCGCTCGAACCGCCGCACGGTGCCGCCGCTCAGCCGCTGCTCGTCTC 1020
consensus_7181#1 ------------------------------------------------------------
consensus_7181#0 CGCCGCCGAAGGCGAAGAGCTTCTTGCCGGCGGCCCGAGCAACGCGCCTCGGAAACCAAA 1080
consensus_7181#1 ------------------------------------------------------------
consensus_7181#0 GGCGGCGCGCATCATCATCGGCGACACACAGGCGCCGCCGCCGCCGCCGCCTGTACTCCC 1140
consensus_7181#1 ------------------------------------------------------------
consensus_7181#0 GCGGGACGCACTCGCCCTCGTCGGCGGCGCGCTTGAGCTTGTCGCGCCACCGCACGAGCG 1200
consensus_7181#1 ----------------------------------------------CAACCNCACGATCG 14
* *** ***** **
consensus_7181#0 GGCGGTTGGTGATGTGCCAGCCGTCGGCCTCCTCGACGGCGGCCTGAATCCTGAGCAGCG 1260
consensus_7181#1 G-CGGT-GGTGATGTGCCAGCCGTCGGCTTCTTCGACGGCGGCNTGAATCCTGAGCAGCG 72
* **** ********************* ** *********** ****************
consensus_7181#0 CCACCTCCATCCTCTCCTCGTCATGCTCGGCTCCATCGCCGGCGGCCACCTCCTCCTCAC 1320
consensus_7181#1 CCAC-TCCATCCTCTCCTCGTCATGCTCGGCTCCATCGCCGGCGGCCACCTCCTCCTCAC 131
**** *******************************************************
consensus_7181#0 CGCGGCTGATGAGGTACGAGCATATCCGGCCGACGGCCTCGCCGACGACCGCCGAGCCGA 1380
consensus_7181#1 CGCGGCTGATGAGGTACGAGCATATCCGGCCGACGGCCTCGCCGACGACCNCCGAGCCGA 191
************************************************** *********
consensus_7181#0 CGATCTCCACCACCGACGGTCGCTGCATATTCTTCGCTTACAAGTACTCCAACTATGGTG 1440
consensus_7181#1 CGATCTCCACCACCGACGGTCGCTGCATATTCTTCGCTTACAAGTACTCCAACTATGGTG 251
************************************************************
consensus_7181#0 GTCTCTACGCACATGGTCATGTCAATATTCCAAAAGTTTTGACAAAATTACACCGAAAGA 1500
consensus_7181#1 GTCTCTACGCACATGGTCATGTCAATATTCCAAAAGTTTTGACAAAATTACACCGAAAGA 311
************************************************************
consensus_7181#0 TAAACAATGTATTCATGAGTAGTGTGAAACTGAAATCTTACATGTTTTGGATTATTATTA 1560
consensus_7181#1 TAAACAATGTATTCATGAGTAATGTGAAACTGAAATCTTACATGTTTTGGATTATTATTA 371
********************* **************************************
consensus_7181#0 ATTATATTTGATTTGCATGGGGTTAAGTTTAACCCTTTCATTGTCGATGGATGACCTAAA 1620
consensus_7181#1 ATTATATTTGATTTGCATGCGGTTAAGTTTAAAAAAAAAAAAAAAAAAAAAA-------- 423
******************* ************ * * *
consensus_7181#0 GATCCAAGAAATAATATTCTTATGTATT 1648
consensus_7181#1 ----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||