These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7204#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1806 fasta sequence [TACACGATTGCTCCAGCTAGCTGCACCTGCACATCGCCATGGCCATGGCCGACCTGGAGTTGGAGAAGGTTGCGAGCTTCTTGCTGGCGGCGCTGCTGCCGCTCGTGCTCTTCAAGCTGGCGGCGGCGAAGCGCGGTGGTGGCGATGGCGGCATGAGGCTGCCGCCTGGGCCGTGGCGGCTGCCGGTGATCGGCAACCTGCACCAGATCATGGCGGGTGGCCAGCTCGTGCACCGCACCATGGCCGGCCTGGCGAGGGGGCTCGGCGACGCGCCGCTGCTGTCGCTCAGGCTCGGCGAGGTCCCCATCGTCGTGGCCTCGTCGGCCGACGCCGCGAGGGAGATCATGAGCAGGCACGACGCCAAGTTCGCCACACGGCCGTGGAGCCCCACCGTGCGGGTCCAGATGGTCGACGGCGAGGGCCTCGCGTTCGCGCCCTACGGCGCGCTGTGGCGGCAGCTGCGCAAGATCACCATGGTGGAGCTGCTCAGCCCGCGCCGCGTCAGGTCGTTCCGCCGCGTGCGGGAGGAGGAGGTCGGCCGCCTCGTCGTCGCCGTCGCCACGGCGGCGACGCGGCGGCCCGGCGAGGCCGCCGTGAACGTCGGCGAGCGGCTCACCGTGCTGATCACCGACATCGCGGTGCGCACGATCATCGGCGACCGGTTCGAGCGGCGGGAGGATTTCCTCGACGCCGCCGCCGAGTGGGTCAAGATCATGTCCGGGTTCAGCCTCGGCGACCTGTTCCCGTCGTCGAGGCTGGCCAGCTTCGTCAGCGGCACGGTGCGCCGGGCGGAGGCGAACCACCGCAAGAACTTCGAGCTGATGGATTACGCTCTCAAGCAGCATGAGGAGAAGAGGGCAGCTGCTGCAGCTGCCGGCGCCGGCGCCGTGGAAGACGATGAGGACATCGTCGACGTGCTTCTCAGGATTCAGAAGGAAGGGGGCCTCGAAGTGCCCCTCACCATGGGCGTCATCAAAGGCGTCATTCGTGACCTTTTTGGTGCCGGGAGTGAGACATCAGCTAATACACTCCAATGGACTATGTCCGAGCTCGTGAGGAACCCAAGAGTGATGCAAAAGGCACAAACTGAGCTACGTGATTGTCTTCGAGGAAAGCAATCGGTGTCAGAAGATGATTTGATCGGATTGAAATACTTGAAGCTTGTCATCAAGGAAACCCTAAGGCTGCATCCTGTAGTGCCACTGCTTCTTCCGAGAGAATGTCAAGAGACATGTAACATTATGGGGTACGACGTGCCCAAGGGTACAAACGTGCTCGTGAACGTCTGGGCAATATGCAGAGATCCTAGGCATTGGGAAAATGCTGAGACATTCATACCAGAGCGATTTGAGGATAGCACCGTAGACTTTAAAGGCACAGACTTTGAGTTCATACCATTTGGAGCAGGACGAAGGATGTGCCCTGGTTTGGCATTTGCGCAGGTTAGCATGGAGCTTGCTCTAGCCTCATTGCTATATCATTTCGACTGGGAACTCCCTAGTGGTGTTGCGCCAAGCAATCTAGACATGGAAGAGGAGATGGGTATCACCATCCGAAGGAAGAATGATCTTTACCTGGTTCCAAAGGTCCATGTGCCTCTATAGTTTGGCTCGTAACTGCTTCA-CA-CAATATGTGTCTCCTGTGA-CCCGTACCTGCCAAGTAGCGATCATGAGCATTCCA-TTGTGTTTCATGCCCTTATGGTGTTATGCTGCTCAACTTTTTTAATGTTTTCTCGAAATAAGTACCATCATAGTTGTTCATGTAACTATAAATTACGAGTTTAATTTGTGTCGTAGTTAAAAAAAA] [+] EMBL AK068907 [TACACGATTGCTCCAGCTAGCTGCACCTGCACATCGCCATGGCCATGGCCGACCTGGAGTTGGAGAAGGTTGCGAGCTTCTTGCTGGCGGCGCTGCTGCCGCTCGTGCTCTTCAAGCTGGCGGCGGCGAAGCGCGGTGGTGGCGATGGCGGCATGAGGCTGCCGCCTGGGCCGTGGCGGCTGCCGGTGATCGGCAACCTGCACCAGATCATGGCGGGTGGCCAGCTCGTGCACCGCACCATGGCCGGCCTGGCGAGGGGGCTCGGCGACGCGCCGCTGCTGTCGCTCAGGCTCGGCGAGGTCCCCATCGTCGTGGCCTCGTCGGCCGACGCCGCGAGGGAGATCATGAGCAGGCACGACGCCAAGTTCGCCACACGGCCGTGGAGCCCCACCGTGCGGGTCCAGATGGTCGACGGCGAGGGCCTCGCGTTCGCGCCCTACGGCGCGCTGTGGCGGCAGCTGCGCAAGATCACCATGGTGGAGCTGCTCAGCCCGCGCCGCGTCAGGTCGTTCCGCCGCGTGCGGGAGGAGGAGGTCGGCCGCCTCGTCGTCGCCGTCGCCACGGCGGCGACGCGGCGGCCCGGCGAGGCCGCCGTGAACGTCGGCGAGCGGCTCACCGTGCTGATCACCGACATCGCGGTGCGCACGATCATCGGCGACCGGTTCGAGCGGCGGGAGGATTTCCTCGACGCCGCCGCCGAGTGGGTCAAGATCATGTCCGGGTTCAGCCTCGGCGACCTGTTCCCGTCGTCGAGGCTGGCCAGCTTCGTCAGCGGCACGGTGCGCCGGGCGGAGGCGAACCACCGCAAGAACTTCGAGCTGATGGATTACGCTCTCAAGCAGCATGAGGAGAAGAGGGCAGCTGCTGCAGCTGCCGGCGCCGGCGCCGTGGAAGACGATGAGGACATCGTCGACGTGCTTCTCAGGATTCAGAAGGAAGGGGGCCTCGAAGTGCCCCTCACCATGGGCGTCATCAAAGGCGTCATTCGTGACCTTTTTGGTGCCGGGAGTGAGACATCAGCTAATACACTCCAATGGACTATGTCCGAGCTCGTGAGGAACCCAAGAGTGATGCAAAAGGCACAAACTGAGCTACGTGATTGTCTTCGAGGAAAGCAATCGGTGTCAGAAGATGATTTGATCGGATTGAAATACTTGAAGCTTGTCATCAAGGAAACCCTAAGGCTGCATCCTGTAGTGCCACTGCTTCTTCCGAGAGAATGTCAAGAGACATGTAACATTATGGGGTACGACGTGCCCAAGGGTACAAACGTGCTCGTGAACGTCTGGGCAATATGCAGAGATCCTAGGCATTGGGAAAATGCTGAGACATTCATACCAGAGCGATTTGAGGATAGCACCGTAGACTTTAAAGGCACAGACTTTGAGTTCATACCATTTGGAGCAGGACGAAGGATGTGCCCTGGTTTGGCATTTGCGCAGGTTAGCATGGAGCTTGCTCTAGCCTCATTGCTATATCATTTCGACTGGGAACTCCCTAGTGGTGTTGCGCCAAGCAATCTAGACATGGAAGAGGAGATGGGTATCACCATCCGAAGGAAGAATGATCTTTACCTGGTTCCAAAGGTCCGTGTGCCTCTATAGTTTGGCTCGTAACTGCTTCA CA CAATATGTGTCTCCTGTGA CCCGTACCTGCCAAGTAGCGATCATGAGCATTCCA TTGTGTTTCATGCCCTTATGGTGTTATGCTGCTCAACTTTTTTAATGTTTTCTCGAAATAAGTACCATCATAGTTGTTCATGTAACTATAAA ] [+] EMBL CF195897 [ TTGGCATTTGCGCAGGTTAGCATGGAGCTTGCTCTAGCCTCATTGCTATATCATTTCGACTGGGAACTCCCTATTGGTGTTGCGCCAAGCAATCTAGACATGGAAGAGGAGATGGGTATCACCATCCGAAGGAAGAATGATCTTTACCTGGTTCCAAAGGTCCATGTGCCTCTATAGTTTGGCTCGTAACTGCTTCA CA CAATATGTGTCTCCTGTGA CCCGTACCTGCCAAGTAGCGATCATGAGCATTCCA TTGTGTTTCATGCCCTTATGGTGTTATGCTGCTCAACTTTTTTAATGTTTTCTCGAAATAAGTACCATCATAGTTGTTCATGTAACTATAAATTACGAGTTTAATTTGTGTCGTAGTTAA ] [+] EMBL BI804442 [ cAAGGTCCATGTGCCTCTATAGTTTGGCTCGTAACTGCTTCACCACCAATATGTGTCTCCTGTGACCCCGTACCTGCCACGTAGCGATCATGAGCATTCCACTTGTGTTTCATGCCCTTATGGTGTTATGCTGCTCAACTTTTTTAATGTTTTCTCGAAATAAGTACCATCATAGTTGTTCATGTAACTATAAATTACGAGTTTAATTTGTGTCGTAGTTAAAAAAAA] consensusID : consensus_7204#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 635 fasta sequence [GCTGACAAGCCGATATAAGTAGGGTAACTACAGGGGTTATCCCAGTCCCAAATGTTGATTATCGCCGGCCCAGTAAGCGGGGGTAATACCACTCACTATAAGGCGAATTGGGACCGGGGCCCCCCCTTAAAGTACGACGGTATAGATTAGCATTAAAGCGTGGTAACGGCCAAGGTGCCCTGGGCGATGGCGAACCCCCGCAAGATCTTCGAGATGATGGAATACGCTTTCAACCAGCATGAGAAGAAGAGGGCAGATGCTGCAGTTGCCGGCGCAGGCGCCGTGAAAGACAATAAGGACATTGTAGACGTGCTTCTCAGGATTCAGACGGATGGGGGCCTCGAAGTGCCCCTCACCATGGGAGTCATCAAAGGCGTCATTTATGACCTATTTGGTGCCGGGAGTGAGACATCAGCTAATACACTCCAATGGACTATGTCCGAGCTAGTGAGGAACCCAAGAGTGATGCAAAAGGCACAAACTGAGATACGTGATTGTCTTCGAGGGAAGCAATCGGTGTCAAAAGATGATTTGATCGGATTGAAATACTTGAAGCATGTCATCAAGGAAACCGTAAGGCTGCATCCTGTAGTGCCACTGCTTCTTCCGAGAGAATGTCAAGAGACATGTAACAT] [-] EMBL AW069943 [GCTGACAAGCCGATATAAGTAGGGTAACTACAGGGGTTATCCCAGTCCCAAATGTTGATTATCGCCGGCCCAGTAAGCGGGGGTAATACCACTCACTATAAGGCGAATTGGGACCGGGGCCCCCCCTTAAAGTACGACGGTATAGATTAGCATTAAAGCGTGGTAACGGCCAAGGTGCCCTGGGCGATGGCGAACCCCCGCAAGATCTTCGAGATGATGGAATACGCTTTCAACCAGCATGAGAAGAAGAGGGCAGATGCTGCAGTTGCCGGCGCAGGCGCCGTGAAAGACAATAAGGACATTGTAGACGTGCTTCTCAGGATTCAGACGGATGGGGGCCTCGAAGTGCCCCTCACCATGGGAGTCATCAAAGGCGTCATTTATGACCTATTTGGTGCCGGGAGTGAGACATCAGCTAATACACTCCAATGGACTATGTCCGAGCTAGTGAGGAACCCAAGAGTGATGCAAAAGGCACAAACTGAGATACGTGATTGTCTTCGAGGGAAGCAATCGGTGTCAAAAGATGATTTGATCGGATTGAAATACTTGAAGCATGTCATCAAGGAAACCGTAAGGCTGCATCCTGTAGTGCCACTGCTTCTTCCGAGAGAATGTCAAGAGACATGTAACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7204#0 TACACGATTGCTCCAGCTAGCTGCACCTGCACATCGCCATGGCCATGGCCGACCTGGAGT 60 consensus_7204#1 ------------------------------------------------------------ consensus_7204#0 TGGAGAAGGTTGCGAGCTTCTTGCTGGCGGCGCTGCTGCCGCTCGTGCTCTTCAAGCTGG 120 consensus_7204#1 ------------------------------------------------------------ consensus_7204#0 CGGCGGCGAAGCGCGGTGGTGGCGATGGCGGCATGAGGCTGCCGCCTGGGCCGTGGCGGC 180 consensus_7204#1 ------------------------------------------------------------ consensus_7204#0 TGCCGGTGATCGGCAACCTGCACCAGATCATGGCGGGTGGCCAGCTCGTGCACCGCACCA 240 consensus_7204#1 ------------------------------------------------------------ consensus_7204#0 TGGCCGGCCTGGCGAGGGGGCTCGGCGACGCGCCGCTGCTGTCGCTCAGGCTCGGCGAGG 300 consensus_7204#1 ------------------------------------------------------------ consensus_7204#0 TCCCCATCGTCGTGGCCTCGTCGGCCGACGCCGCGAGGGAGATCATGAGCAGGCACGACG 360 consensus_7204#1 ------------------------------------------------------------ consensus_7204#0 CCAAGTTCGCCACACGGCCGTGGAGCCCCACCGTGCGGGTCCAGATGGTCGACGGCGAGG 420 consensus_7204#1 ------------------------------------------------------------ consensus_7204#0 GCCTCGCGTTCGCGCCCTACGGCGCGCTGTGGCGGCAGCTGCGCAAGATCACCATGGTGG 480 consensus_7204#1 ------------------------------------------------------------ consensus_7204#0 AGCTGCTCAGCCCGCGCCGCGTCAGGTCGTTCCGCCGCGTGCGGGAGGAGGAGGTCGGCC 540 consensus_7204#1 ------------------------------------------------------------ consensus_7204#0 GCCTCGTCGTCGCCGTCGCCACGGCGGCGACGCGGCGGCCCGGCGAGGCCGCCGTGAACG 600 consensus_7204#1 --------------------------------------GCTGAC-AAGCCGATATAAGTA 21 * * * * **** * * consensus_7204#0 TCGGCGAGCGGCTCACCGTGCTGATCACCGACATCGCGGTGCGCACGATCATCGGCGACC 660 consensus_7204#1 -----GGGTAACT-ACAGGGGTTATCCCAGTCCCAAATGT-----TGATTATCG----CC 66 * * ** ** * * * *** * * * ** *** **** ** consensus_7204#0 GGTTCGAGCGGCGGGAGGATTTCCTCGACGCCGCCGCCGAGTGGGTCAAGATCATGTCCG 720 consensus_7204#1 GGCCCAGTAAGCGGGGGTAATACCAC----TCACTATAAGGCGAATTGGGACCG-----G 117 ** * ***** * * * ** * * * * * * ** * * consensus_7204#0 GGTTCAGCCTCGGCGACCTGTTCCCGTCGTCGAGGCTGGCCAGCTTCGTCAGCGGCACGG 780 consensus_7204#1 GGCCCCCCCTTAAAGTACGACGGTATAGATTAGCATTAA--AGCGTGGTAACGGCCAAGG 175 ** * *** * * * * *** * ** * * ** ** consensus_7204#0 TGCGCCGGGCGGAGGCGAACCACCGCAAGAACTTCGAGCTGATGGATTACGCTCTCAAGC 840 consensus_7204#1 TGCCCTGGGCGATGGCGAACCCCCGCAAGATCTTCGAGATGATGGAATACGCTTTCAACC 235 *** * ***** ******** ******** ******* ******* ****** **** * consensus_7204#0 AGCATGAGGAGAAGAGGGCAGCTGCTGCAGCTGCCGGCGCCGGCGCCGTGGAAGACGATG 900 consensus_7204#1 AGCATGAGAAGAAGAGGGCAGATGCTGCAGTTGCCGGCGCAGGCGCCGTGAAAGACAATA 295 ******** ************ ******** ********* ********* ***** ** consensus_7204#0 AGGACATCGTCGACGTGCTTCTCAGGATTCAGAAGGAAGGGGGCCTCGAAGTGCCCCTCA 960 consensus_7204#1 AGGACATTGTAGACGTGCTTCTCAGGATTCAGACGGATGGGGGCCTCGAAGTGCCCCTCA 355 ******* ** ********************** *** ********************** consensus_7204#0 CCATGGGCGTCATCAAAGGCGTCATTCGTGACCTTTTTGGTGCCGGGAGTGAGACATCAG 1020 consensus_7204#1 CCATGGGAGTCATCAAAGGCGTCATTTATGACCTATTTGGTGCCGGGAGTGAGACATCAG 415 ******* ****************** ****** ************************* consensus_7204#0 CTAATACACTCCAATGGACTATGTCCGAGCTCGTGAGGAACCCAAGAGTGATGCAAAAGG 1080 consensus_7204#1 CTAATACACTCCAATGGACTATGTCCGAGCTAGTGAGGAACCCAAGAGTGATGCAAAAGG 475 ******************************* **************************** consensus_7204#0 CACAAACTGAGCTACGTGATTGTCTTCGAGGAAAGCAATCGGTGTCAGAAGATGATTTGA 1140 consensus_7204#1 CACAAACTGAGATACGTGATTGTCTTCGAGGGAAGCAATCGGTGTCAAAAGATGATTTGA 535 *********** ******************* *************** ************ consensus_7204#0 TCGGATTGAAATACTTGAAGCTTGTCATCAAGGAAACCCTAAGGCTGCATCCTGTAGTGC 1200 consensus_7204#1 TCGGATTGAAATACTTGAAGCATGTCATCAAGGAAACCGTAAGGCTGCATCCTGTAGTGC 595 ********************* **************** ********************* consensus_7204#0 CACTGCTTCTTCCGAGAGAATGTCAAGAGACATGTAACATTATGGGGTACGACGTGCCCA 1260 consensus_7204#1 CACTGCTTCTTCCGAGAGAATGTCAAGAGACATGTAACAT-------------------- 635 **************************************** consensus_7204#0 AGGGTACAAACGTGCTCGTGAACGTCTGGGCAATATGCAGAGATCCTAGGCATTGGGAAA 1320 consensus_7204#1 ------------------------------------------------------------ consensus_7204#0 ATGCTGAGACATTCATACCAGAGCGATTTGAGGATAGCACCGTAGACTTTAAAGGCACAG 1380 consensus_7204#1 ------------------------------------------------------------ consensus_7204#0 ACTTTGAGTTCATACCATTTGGAGCAGGACGAAGGATGTGCCCTGGTTTGGCATTTGCGC 1440 consensus_7204#1 ------------------------------------------------------------ consensus_7204#0 AGGTTAGCATGGAGCTTGCTCTAGCCTCATTGCTATATCATTTCGACTGGGAACTCCCTA 1500 consensus_7204#1 ------------------------------------------------------------ consensus_7204#0 GTGGTGTTGCGCCAAGCAATCTAGACATGGAAGAGGAGATGGGTATCACCATCCGAAGGA 1560 consensus_7204#1 ------------------------------------------------------------ consensus_7204#0 AGAATGATCTTTACCTGGTTCCAAAGGTCCATGTGCCTCTATAGTTTGGCTCGTAACTGC 1620 consensus_7204#1 ------------------------------------------------------------ consensus_7204#0 TTCACACAATATGTGTCTCCTGTGACCCGTACCTGCCAAGTAGCGATCATGAGCATTCCA 1680 consensus_7204#1 ------------------------------------------------------------ consensus_7204#0 TTGTGTTTCATGCCCTTATGGTGTTATGCTGCTCAACTTTTTTAATGTTTTCTCGAAATA 1740 consensus_7204#1 ------------------------------------------------------------ consensus_7204#0 AGTACCATCATAGTTGTTCATGTAACTATAAATTACGAGTTTAATTTGTGTCGTAGTTAA 1800 consensus_7204#1 ------------------------------------------------------------ consensus_7204#0 AAAAAA 1806 consensus_7204#1 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||