|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7226#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1699 fasta sequence
[GTCCGTGTGGCGCCATAGGGGGCGACAGAGGGGATCTCTCTCCCCTCGGCTTTCGCCTCGGCTGCAGTTTCGCATTATTCCGACTTCGCCGTCGTTCTCCTCCCGTCGCGGCGAGCCCACGGCGGCCGCGGCGCCGCCGGAGAGGAGCGGAGAGTGGTGATCCGTCGCGGAATTCGGGTGATCCCTTCCATTTCGTCCTAGTTCGCTCCGTGCTGTATAGCCTTTGCTGTGGGGATAATGGCGAATCTGCAGCCCTCGCTTTCCATTCCGCCCTCCTTCGCCGGGGCCTCGCCGCCATCGCCTTCTCCGATCGGCGGCGGTGGCGTGGGCGGCGGGGTGGGGCAGCCAGCCAAGGATATGAAGATGGCGTCGGCGGAGCAGCTGGTGCTCGACCTCTGCGACCCCGAGCTTCGCGAGAACGCCCTCCTCGAGCTCTCAAAGACTTCATGTTCCAGTCATTAACATGATAAGCCAGTTTATTTGGTCAAAAAAAATTCAATCCTTTCTTTTCAGAAAAGAGAGATATTTCAAGATCTGGCCCCACTTCTTTGGCATTCTTTTGGAACAGTTGCTGCACTTCTTCAGGAAATTGTGTCAATCTACTCTGCACTTTCACCCCCAACATTGTCACCAGGTGCATCGAACCGAGTCTGCAATGCACTTGCACTTCTTCAGCTCATATTCCCCTGTACCTGTACCCATTCTTGAATACTACCAGCAAGACAAGACCTTTTGAATACCTGCGACTCACCAGCCTGGGTGTCATCGGTGCACTTGTTAAGGTTGATGATACTGAAGTTATCAGTTTTCTGCTGCAAACTGAAATAATTCCTCTGTGTTTGCGTACCATGGAAATGGGAAGTGAGCTGTCAAAAACTGTGGCCACCTTCATTGTTCAGAAGATTCTCCTCGATGATGTTGGATTGCGCTACATTTGTGCCACTGCTGAGCGTTTCTTTGCTGTAGGCAGTGTTTTAGCAAACATGGTAGTTTCACTTGCTGAGCAGCCTTCCACAAGGTTGCTGAAGCACATTATCCGATGTTACCTTAGGCTGTCAGACAATTCCAGGGCATGTGCTGCACTACAAACTTGCCTCCCTGACATGCTGAAGGATGGCACGTTCAATAACTGTCTTAGGGATGATCCTACAACAAGGCGCTGGCTCCAGCAATTGCTTCTTAATGTGACAGGCGCAGGCATGGGAGCTGCTCCTCAGCCAGGCCTGGATCACATGATGGGGATATAAATCAGTCTGATTGCTGCAATTCACAACAATAATA-ACCTTATCTACCCGTGAATTGCAAGTAGGGAAGATCTCCTAGGT-ATTTAGGCTAGAAATAGGTAGCATGGTTAGTCCAACCTTCGAAAACAAGAGGAACTGTTTGTGTGTTAGTGTCATTGGCTGTTAAGGGTGCTGTGCTTATTCTTTAATGCTGTGGAAACAAGGACAGCAAGAAAGCTCATTTTTATGTTCTTGCACCAGAACTGCTTTTGCTTTGACAGTTCCAACGTTTAAGAAAAAAAGAGGAAGAGCTTAGGTTTGATAATTTATTCCATGAGGAGCATACCCGAAGGAAGACTATGTTGTATGCTGCCTTTGGGTGATGATGTTTAATTGTGGTGTGATGTGCAACCGTTTACAAGTAATGTTTGTACAGGCCAGCCTTGTCGTAGGCTTTGTCTTTGTAAAAAAAAAAA]
[+] EMBL AK106782 [GTCCGTGTGGCGCCATAGGGGGCGACAGAGGGGATCTCTCTCCCCTCGGCTTTCGCCTCGGCTGCAGTTTCGCATTATTCCGACTTCGCCGTCGTTCTCCTCCCGTCGCGGCGAGCCCACGGCGGCCGCGGCGCCGCCGGAGAGGAGCGGAGAGTGGTGATCCGTCGCGGAATTCGGGTGATCCCTTCCATTTCGTCCTAGTTCGCTCCGTGCTGTATAGCCTTTGCTGTGGGGATAATGGCGAATCTGCAGCCCTCGCTTTCCATTCCGCCCTCCTTCGCCGGGGCCTCGCCGCCATCGCCTTCTCCGATCGGCGGCGGTGGCGTGGGCGGCGGGGTGGGGCAGCCAGCCAAGGATATGAAGATGGCGTCGGCGGAGCAGCTGGTGCTCGACCTCTGCGACCCCGAGCTTCGCGAGAACGCCCTCCTCGAGCTCTCAAAGACTTCATGTTCCAGTCATTAACATGATAAGCCAGTTTATTTGGTCAAAAAAAATTCAATCCTTTCTTTTCAGAAAAGAGAGATATTTCAAGATCTGGCCCCACTTCTTTGGCATTCTTTTGGAACAGTTGCTGCACTTCTTCAGGAAATTGTGTCAATCTACTCTGCACTTTCACCCCCAACATTGTCACCAGGTGCATCGAACCGAGTCTGCAATGCACTTGCACTTCTTCAGCTCATATTCCCCTGTACCTGTACCCATTCTTGAATACTACCAGCAAGACAAGACCTTTTGAATACCTGCGACTCACCAGCCTGGGTGTCATCGGTGCACTTGTTAAGGTTGATGATACTGAAGTTATCAGTTTTCTGCTGCAAACTGAAATAATTCCTCTGTGTTTGCGTACCATGGAAATGGGAAGTGAGCTGTCAAAAACTGTGGCCACCTTCATTGTTCAGAAGATTCTCCTCGATGATGTTGGATTGCGCTACATTTGTGCCACTGCTGAGCGTTTCTTTGCTGTAGGCAGTGTTTTAGCAAACATGGTAGTTTCACTTGCTGAGCAGCCTTCCACAAGGTTGCTGAAGCACATTATCCGATGTTACCTTAGGCTGTCAGACAATTCCAGGGCATGTGCTGCACTACAAACTTGCCTCCCTGACATGCTGAAGGATGGCACGTTCAATAACTGTCTTAGGGATGATCCTACAACAAGGCGCTGGCTCCAGCAATTGCTTCTTAATGTGACAGGCGCAGGCATGGGAGCTGCTCCTCAGCCAGGCCTGGATCACATGATGGGGATATAAATCAGTCTGATTGCTGCAATTCACAACAATAATA ACCTTATCTACCCGTGAATTGCAAGTAGGGAAGATCTCCTAGGT ATTTAGGCTAGAAATAGGTAGCATGGTTAGTCCAACCTTCGAAAACAAGAGGAACTGTTTGTGTGTTAGTGTCATTGGCTGTTAAGGGTGCTGTGCTTATTCTTTAATGCTGTGGAAACAAGGACAGCAAGAAAGCTCATTTTTATGTTCTTGCACCAGAACTGCTTTTGCTTTGACAGTTCC ]
[+] EMBL CB640418 [ GTCGTTCTCCTCCCGTCGCGGCGAGCCCACGGCGGCCGCGGCGCCGCCGGAGAGGAGCGGAGAGTGGTGATCCGTCGCGGAATTCGGGTGATCCCTTCCATTTCGTCCTAGTTCGCTCCGTGCTGTATAGCCTTTGCTGTGGGGATAATGGCGAATCTGCAGCCCTCGCTTTCCATTCCGCCCTCCTTCGCCGGGGCCTCGCCGCCATCGCCTTCTCCGATCGGCGGCGGTGGCGTGGGCGG ]
[-] EMBL CF279643 [ GGCGCAGGCATGGGAGCTGCTCCTCAGCCAGGCCTGGATCACATGATGGGGATATAAATCAGTCTGATTGCTGCAATTCACAACAATAATACACCTTATCTACCCGTGAATTGCAAGTAGGGAAGATCTCCTAGGTGATTTAGGCTAGAAATAGGTAGCATGGTTAGTCCAACCTTCGAAAACAAGAGGAACTGTTTGTGTGTTAGTGTCATTGGCTGTTAAGGGTGCTGTGCTTATTCTTTAATGCTGTGGAAACAAGGACAGCAAGAAAGCTCATTTTTATGTTCTTGCACCAGAACTGCTTTTGCTTTGACAGTTCCAACGTTTAAGAAAAAAAGAGGAAGAGCTTAGGTTTGATAATTTATTCCATGAGGAGCATACCCGAAGGAAGACTATGTTGTATGCTGCCTTTGGGTGATGATGTTTAATTGTGGTGTGATGTGCAACCGTTTACAAGTAATGTTTGTACAGGCCAGCCTTGTCGTAGGCTTTGTCTTTGTAAAAAAAAAAA]
consensusID : consensus_7226#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 433 fasta sequence
[AGTTTCTCATTATTCCGACTTCGCCGTCGTTCTCCTCCCGTCGCGGCGAGCCCACGGCGGCCGCGGCGCCGCCGGAGAGGAGCGGAGAGTGGTGATCCGTCGCGGAATTCGGGTGATCCCTTCCATTTCGTCCTAGTTCGCTTCGTGCTGTATAGCCTTTGCTGTGGGGATAATGGCGAATCTGCAGCCCTCGCTTTCCATTCCGCCCTCCTTCGCCGGGGCCTCGCCGCCATCGCCTTCTCCGATCGGCGGCGGTGGCGTGGGCGGCGGGGTGGGGCAGCCAGCCAAGGATATGAAGATGGCGTCGGCGGAGCAGCTGGTGCTCGACCTCTGCGACCCCGAGCTTCGCGAGAACGCCCTCCTCGAGCTCTCAAAGAAAAGAGAGATATTTCAAGATCTGGCCCCCACTTCTTGGCATTCTTTTGGAACAGTT]
[+] EMBL CF279644 [AGTTTCTCATTATTCCGACTTCGCCGTCGTTCTCCTCCCGTCGCGGCGAGCCCACGGCGGCCGCGGCGCCGCCGGAGAGGAGCGGAGAGTGGTGATCCGTCGCGGAATTCGGGTGATCCCTTCCATTTCGTCCTAGTTCGCTTCGTGCTGTATAGCCTTTGCTGTGGGGATAATGGCGAATCTGCAGCCCTCGCTTTCCATTCCGCCCTCCTTCGCCGGGGCCTCGCCGCCATCGCCTTCTCCGATCGGCGGCGGTGGCGTGGGCGGCGGGGTGGGGCAGCCAGCCAAGGATATGAAGATGGCGTCGGCGGAGCAGCTGGTGCTCGACCTCTGCGACCCCGAGCTTCGCGAGAACGCCCTCCTCGAGCTCTCAAAGAAAAGAGAGATATTTCAAGATCTGGCCCCCACTTCTTGGCATTCTTTTGGAACAGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7226#0 GTCCGTGTGGCGCCATAGGGGGCGACAGAGGGGATCTCTCTCCCCTCGGCTTTCGCCTCG 60
consensus_7226#1 ------------------------------------------------------------
consensus_7226#0 GCTGCAGTTTCGCATTATTCCGACTTCGCCGTCGTTCTCCTCCCGTCGCGGCGAGCCCAC 120
consensus_7226#1 -----AGTTTCTCATTATTCCGACTTCGCCGTCGTTCTCCTCCCGTCGCGGCGAGCCCAC 55
****** ************************************************
consensus_7226#0 GGCGGCCGCGGCGCCGCCGGAGAGGAGCGGAGAGTGGTGATCCGTCGCGGAATTCGGGTG 180
consensus_7226#1 GGCGGCCGCGGCGCCGCCGGAGAGGAGCGGAGAGTGGTGATCCGTCGCGGAATTCGGGTG 115
************************************************************
consensus_7226#0 ATCCCTTCCATTTCGTCCTAGTTCGCTCCGTGCTGTATAGCCTTTGCTGTGGGGATAATG 240
consensus_7226#1 ATCCCTTCCATTTCGTCCTAGTTCGCTTCGTGCTGTATAGCCTTTGCTGTGGGGATAATG 175
*************************** ********************************
consensus_7226#0 GCGAATCTGCAGCCCTCGCTTTCCATTCCGCCCTCCTTCGCCGGGGCCTCGCCGCCATCG 300
consensus_7226#1 GCGAATCTGCAGCCCTCGCTTTCCATTCCGCCCTCCTTCGCCGGGGCCTCGCCGCCATCG 235
************************************************************
consensus_7226#0 CCTTCTCCGATCGGCGGCGGTGGCGTGGGCGGCGGGGTGGGGCAGCCAGCCAAGGATATG 360
consensus_7226#1 CCTTCTCCGATCGGCGGCGGTGGCGTGGGCGGCGGGGTGGGGCAGCCAGCCAAGGATATG 295
************************************************************
consensus_7226#0 AAGATGGCGTCGGCGGAGCAGCTGGTGCTCGACCTCTGCGACCCCGAGCTTCGCGAGAAC 420
consensus_7226#1 AAGATGGCGTCGGCGGAGCAGCTGGTGCTCGACCTCTGCGACCCCGAGCTTCGCGAGAAC 355
************************************************************
consensus_7226#0 GCCCTCCTCGAGCTCTCAAAGACTTCATGTTCCAGTCATTAACATGATAAGCCAGTTTAT 480
consensus_7226#1 GCCCTCCTCGAGCTCTCAAAGA-------------------------------------- 377
**********************
consensus_7226#0 TTGGTCAAAAAAAATTCAATCCTTTCTTTTCAGAAAAGAGAGATATTTCAAGATCTGGCC 540
consensus_7226#1 ----------------------------------AAAGAGAGATATTTCAAGATCTGGCC 403
**************************
consensus_7226#0 CCACTTCTTTGGCATTCTTTTGGAACAGTTGCTGCACTTCTTCAGGAAATTGTGTCAATC 600
consensus_7226#1 CCCACTTCTTGGCATTCTTTTGGAACAGTT------------------------------ 433
** * **********************
consensus_7226#0 TACTCTGCACTTTCACCCCCAACATTGTCACCAGGTGCATCGAACCGAGTCTGCAATGCA 660
consensus_7226#1 ------------------------------------------------------------
consensus_7226#0 CTTGCACTTCTTCAGCTCATATTCCCCTGTACCTGTACCCATTCTTGAATACTACCAGCA 720
consensus_7226#1 ------------------------------------------------------------
consensus_7226#0 AGACAAGACCTTTTGAATACCTGCGACTCACCAGCCTGGGTGTCATCGGTGCACTTGTTA 780
consensus_7226#1 ------------------------------------------------------------
consensus_7226#0 AGGTTGATGATACTGAAGTTATCAGTTTTCTGCTGCAAACTGAAATAATTCCTCTGTGTT 840
consensus_7226#1 ------------------------------------------------------------
consensus_7226#0 TGCGTACCATGGAAATGGGAAGTGAGCTGTCAAAAACTGTGGCCACCTTCATTGTTCAGA 900
consensus_7226#1 ------------------------------------------------------------
consensus_7226#0 AGATTCTCCTCGATGATGTTGGATTGCGCTACATTTGTGCCACTGCTGAGCGTTTCTTTG 960
consensus_7226#1 ------------------------------------------------------------
consensus_7226#0 CTGTAGGCAGTGTTTTAGCAAACATGGTAGTTTCACTTGCTGAGCAGCCTTCCACAAGGT 1020
consensus_7226#1 ------------------------------------------------------------
consensus_7226#0 TGCTGAAGCACATTATCCGATGTTACCTTAGGCTGTCAGACAATTCCAGGGCATGTGCTG 1080
consensus_7226#1 ------------------------------------------------------------
consensus_7226#0 CACTACAAACTTGCCTCCCTGACATGCTGAAGGATGGCACGTTCAATAACTGTCTTAGGG 1140
consensus_7226#1 ------------------------------------------------------------
consensus_7226#0 ATGATCCTACAACAAGGCGCTGGCTCCAGCAATTGCTTCTTAATGTGACAGGCGCAGGCA 1200
consensus_7226#1 ------------------------------------------------------------
consensus_7226#0 TGGGAGCTGCTCCTCAGCCAGGCCTGGATCACATGATGGGGATATAAATCAGTCTGATTG 1260
consensus_7226#1 ------------------------------------------------------------
consensus_7226#0 CTGCAATTCACAACAATAATAACCTTATCTACCCGTGAATTGCAAGTAGGGAAGATCTCC 1320
consensus_7226#1 ------------------------------------------------------------
consensus_7226#0 TAGGTATTTAGGCTAGAAATAGGTAGCATGGTTAGTCCAACCTTCGAAAACAAGAGGAAC 1380
consensus_7226#1 ------------------------------------------------------------
consensus_7226#0 TGTTTGTGTGTTAGTGTCATTGGCTGTTAAGGGTGCTGTGCTTATTCTTTAATGCTGTGG 1440
consensus_7226#1 ------------------------------------------------------------
consensus_7226#0 AAACAAGGACAGCAAGAAAGCTCATTTTTATGTTCTTGCACCAGAACTGCTTTTGCTTTG 1500
consensus_7226#1 ------------------------------------------------------------
consensus_7226#0 ACAGTTCCAACGTTTAAGAAAAAAAGAGGAAGAGCTTAGGTTTGATAATTTATTCCATGA 1560
consensus_7226#1 ------------------------------------------------------------
consensus_7226#0 GGAGCATACCCGAAGGAAGACTATGTTGTATGCTGCCTTTGGGTGATGATGTTTAATTGT 1620
consensus_7226#1 ------------------------------------------------------------
consensus_7226#0 GGTGTGATGTGCAACCGTTTACAAGTAATGTTTGTACAGGCCAGCCTTGTCGTAGGCTTT 1680
consensus_7226#1 ------------------------------------------------------------
consensus_7226#0 GTCTTTGTAAAAAAAAAAA 1699
consensus_7226#1 -------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||