These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7231#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1409 fasta sequence [GTTGAGTTAAGTTGAGTTGAGTAGTCGAGTGGGCGGCAATGGCGAGCACGAGGAGGCGACGCGCGGGCGGCGTGCCAATGGCGGTGATCCGGCTCGGAGTGGCGGCCATCGTCGTCCTCGGCGCCGGCGTGATCGGCGGCGCGCGCGCGCAGCTCAGGATGGGGTTCTACGACGAGAGCTGCCCCGCGGCGGAGCGGATCGTCGGGGAGTACGTCCGGCAGCACGTCGGCCGCGTCCCCACCGTCGCCGCCGCGCTCCTCCGGCTGCACTACCACGACTGCTTCGTCAGGGGCTGCGACGCGTCCATCCTCCTCAACTCGACCGGCAATGGCGGCGCGGCGGAGAAGGACGCGGCGCCGAACCAGACGCTGCGAGGGTTCGACCTCATCGACCGCGTCAAGGGCCTCGTGGAGGCGGCCTGCCCGGGCGTCGTCTCCTGCGCCGACGTCCTCGCGCTCGCCGCCCGCGACGCCGTCGCCGCCATCGGAGGGCCGTCGTGGCGCGTGCCGACGGGGAGGAGGGATGGCACGGTGTCGAGCATGCAGGAGGCGCTCGCGGAGATCCCCTCGCCGGCGATGAGCTTCCCGGAGCTCGCCGGCTTGTTCGCCACCAAGGGCCTCAGCGTGCGTGACCTTGTCTGGCTGTCAGGCGCGCACACCATCGGCATCGCCCACTGCTCGTCCTTCGCCGACCGCCTCTACAACGGCGGCGGCGGCGCCGGCAATGCCAACGGCAACAACACCGATCCGCCGCCGCTGGACGCCGCCTACGCCGCCAACCTGCGTGAGCGCAAGTGCAGGACGGCCGGCGACGGCGTGGTGGAGATGGACCCCGGCAGCCACCTGACGTTCGATCTCGGCTACTACCGCGCGGTGCTCAGGCACCGCGGCCTGCTCCGGTCCGACGCCGCGCTAGTCACCGACGCGGCGGCGCGGGCCGACATCGCCGGCGCCGTGGCGAGCCCGCCGGAGGTGTTCTTCCAGGTGTTCGGCCGGTCGATGGCGACGCTGGGCGCGGTGCAGGTCAAGACCGGCTCCGATGGGGAGATCAGGAGGAACTGCGCTGTCGTGAACAGCGGCCACTGATCAAAAGGGGAGTTGATTTGCAATTCTTCCTGGGATAGCGTGATTTTGTTCTTACGATTTCTTCACTTTTGTCATTTGAATTTGGTGAAATTCTAGTAGAAATTTTGCTGCGCGTGTTCTTGTTGTGTTCAGTGTCGTTGCTGCAACCGGCAAAGCTGTGTTCTTTTGCTTTGAAGTGTGCTGTAGTAATTTATAGCTGATGAGAAAAAAAAAAACAGAATACATACAGTTTACAGTATGAACAGAAAATAAGACAAAATTCTCCGAATTAGCGTCAAATGAAGTCTGTATGCATGCACAGGTAATAACAAAGCTTGCAAATAC] [+] EMBL AK105544 [GTTGAGTTAAGTTGAGTTGAGTAGTCGAGTGGGCGGCAATGGCGAGCACGAGGAGGCGACGCGCGGGCGGCGTGCCAATGGCGGTGATCCGGCTCGGAGTGGCGGCCATCGTCGTCCTCGGCGCCGGCGTGATCGGCGGCGCGCGCGCGCAGCTCAGGATGGGGTTCTACGACGAGAGCTGCCCCGCGGCGGAGCGGATCGTCGGGGAGTACGTCCGGCAGCACGTCGGCCGCGTCCCCACCGTCGCCGCCGCGCTCCTCCGGCTGCACTACCACGACTGCTTCGTCAGGGGCTGCGACGCGTCCATCCTCCTCAACTCGACCGGCAATGGCGGCGCGGCGGAGAAGGACGCGGCGCCGAACCAGACGCTGCGAGGGTTCGACCTCATCGACCGCGTCAAGGGCCTCGTGGAGGCGGCCTGCCCGGGCGTCGTCTCCTGCGCCGACGTCCTCGCGCTCGCCGCCCGCGACGCCGTCGCCGCCATCGGAGGGCCGTCGTGGCGCGTGCCGACGGGGAGGAGGGATGGCACGGTGTCGAGCATGCAGGAGGCGCTCGCGGAGATCCCCTCGCCGGCGATGAGCTTCCCGGAGCTCGCCGGCTTGTTCGCCACCAAGGGCCTCAGCGTGCGTGACCTTGTCTGGCTGTCAGGCGCGCACACCATCGGCATCGCCCACTGCTCGTCCTTCGCCGACCGCCTCTACAACGGCGGCGGCGGCGCCGGCAATGCCAACGGCAACAACACCGATCCGCCGCCGCTGGACGCCGCCTACGCCGCCAACCTGCGTGAGCGCAAGTGCAGGACGGCCGGCGACGGCGTGGTGGAGATGGACCCCGGCAGCCACCTGACGTTCGATCTCGGCTACTACCGCGCGGTGCTCAGGCACCGCGGCCTGCTCCGGTCCGACGCCGCGCTAGTCACCGACGCGGCGGCGCGGGCCGACATCGCCGGCGCCGTGGCGAGCCCGCCGGAGGTGTTCTTCCAGGTGTTCGGCCGGTCGATGGCGACGCTGGGCGCGGTGCAGGTCAAGACCGGCTCCGATGGGGAGATCAGGAGGAACTGCGCTGTCGTGAACAGCGGCCACTGATCAAAAGGGGAGTTGATTTGCAATTCTTCCTGGGATAGCGTGATTTTGTTCTTACGATTTCTTCACTTTTGTCATTTGAATTTGGTGAAATTCTAGTAGAAATTTTGCTGCGCGTGTTCTTGTTGTGTTCAGTGTCGTTGCTGCAACCGGCAAAGCTGTGTTCTTTTGCTTTGAAGTGTGCTGTAGTAATTTATAGCTGATGAGAAAAAAAAAAACAGAATACATACAGTTTACAGTATGAACAGAAAATAAGACAAAATTCTCCGAATTAGCGTCAAATGAAGTCTGTATGCATGCACAGGTAATAACAAAGCTTGCAAATAC] [+] EMBL CB645214 [ AGTTGACCCTTCGAGTGGGCGGCAATGGCGAGCACGAGGAGGCGACGCGCGGGCGGCGTGCCAATGGCGGTGATCCGGCTCGGAGTGGCGGCCATCGTCGTCCTCGGCGCCGGCGTGATCGGCGGCGCGCGCGCGCAGCTCAGGATGGGGTTCTACGACGAGAGCTGCCCCGCGGCGGAGCGGATCGTCGGGGAGTACGTCCGGCAGCACGTCGGCCGCGTCCCCACCGTCGCCGCCGCGCTCCTCCGGCTGCACTACCACGACTGCTTCGTCAGGGGCTGCGACGCGTCCATCCTCCTCAACTCGACCGGCAATGGCGGCGCGGCGGAGAAGGACGCGGCGCCGAACCAGACGCTGCGAGGGTTCGACCTCATCGACCGCGTCAAGGGCCTCGTGGAGGCGGCCTGCCCGGGCGTCGTCTCCTGCGCCGACGTCCTCGCGCTCGCCGCCCGCGACGCCGTCGCCGCCATCGGAGGGCCGTCGTGGCGCGTGCCGACGGGGA ] [-] EMBL CB645215 [ AGGCGCTCGCGGAGATCCCCTCGCCGGCGATGAGCTTCCCGGAGCTCGCCGGCTTGTTCGCCACCAAGGGCCTCAGCGTGCGTGACCTTGTCTGGCTGTCAGGCGCGCACACCATCGGCATCGCCCACTGCTCGTCCTTCGCCGACCGCCTCTACAACGGCGGCGGCGGCGCCGGCAATGCCAACGGCAACAACACCGACCCGCCGCCGCTGGACGCCGCCTACGCCGCCAACCTGCGTGAGCGCAAGTGCAGGACGGCCGGCGACGGCGTGGTGGAGATGGACCCCGGCAGCCACCTGACGTTCGATCTCGGCTACTACCGCGCGGTGCTCAGGCACCGCGGCCTGCTCCGGTCCGACGCCGCGCTAGTCACCGACGCGGCGGCGCGGGCCGACATCGCCGGCGCCGTGGCGAGCCCGCCGGAGGTGTTCTTCCAGGTGTTCGGCCGGTCGATGGCGACGCTGGGCGCGGTGCAGGTCAAGACCGGCTCCGATGGGGAGATCAGGAGGAACTGCGCTGTCGTGAACAGCGGCCACTGATCAAAAGGGGAGTTGATTTGCAATTCTTCCTGGGATAGCGTGATTTTGTTCTTACGATTTCTTCACTTTTGTCATTTGAATTTGGTGAAATTCTAGTAGAAATTTTGCTGCGCGTGTTCTTGTTGTGTTCAGTGTCGTTGCTGCAACCGGCAAAGCTGTGTTCTTTTGCTTTGAAGTGTGCTGTAGTAATTTATAGCTGATGAGAAAAAAAAAA ] consensusID : consensus_7231#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence [CAATTCTNCCTGGGATNGCGTGATTTTGTTCTTNCGATTTCTTCNCTTTTGTCATTTGAATTTGGTGAAATTCTNGTNGAAATTTTTNTGCNCGTGTTCTTGTTGTGTTCAGTGTCGTTGCTGCANCCGGCAAAGCTGTGTTCTTTTGCTTTGAAGTGTGCTGTAGTAATTTNTAGCTGNTGGGAAAANAAAANCAGNATACATACAGTTTNCNGTNTGAACAGAAAATAAGNCAAAATTCTCCGAATTAGCGTCAAATGAAGTCTGTATGCATGCACAGGTAATNACAAAGCTTGCAAATACATCAAAAGACAGCCATGATGTATGCTACTTTATTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU164779 [CAATTCTNCCTGGGATNGCGTGATTTTGTTCTTNCGATTTCTTCNCTTTTGTCATTTGAATTTGGTGAAATTCTNGTNGAAATTTTTNTGCNCGTGTTCTTGTTGTGTTCAGTGTCGTTGCTGCANCCGGCAAAGCTGTGTTCTTTTGCTTTGAAGTGTGCTGTAGTAATTTNTAGCTGNTGGGAAAANAAAANCAGNATACATACAGTTTNCNGTNTGAACAGAAAATAAGNCAAAATTCTCCGAATTAGCGTCAAATGAAGTCTGTATGCATGCACAGGTAATNACAAAGCTTGCAAATACATCAAAAGACAGCCATGATGTATGCTACTTTATTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7231#0 GTTGAGTTAAGTTGAGTTGAGTAGTCGAGTGGGCGGCAATGGCGAGCACGAGGAGGCGAC 60 consensus_7231#1 ------------------------------------------------------------ consensus_7231#0 GCGCGGGCGGCGTGCCAATGGCGGTGATCCGGCTCGGAGTGGCGGCCATCGTCGTCCTCG 120 consensus_7231#1 ------------------------------------------------------------ consensus_7231#0 GCGCCGGCGTGATCGGCGGCGCGCGCGCGCAGCTCAGGATGGGGTTCTACGACGAGAGCT 180 consensus_7231#1 ------------------------------------------------------------ consensus_7231#0 GCCCCGCGGCGGAGCGGATCGTCGGGGAGTACGTCCGGCAGCACGTCGGCCGCGTCCCCA 240 consensus_7231#1 ------------------------------------------------------------ consensus_7231#0 CCGTCGCCGCCGCGCTCCTCCGGCTGCACTACCACGACTGCTTCGTCAGGGGCTGCGACG 300 consensus_7231#1 ------------------------------------------------------------ consensus_7231#0 CGTCCATCCTCCTCAACTCGACCGGCAATGGCGGCGCGGCGGAGAAGGACGCGGCGCCGA 360 consensus_7231#1 ------------------------------------------------------------ consensus_7231#0 ACCAGACGCTGCGAGGGTTCGACCTCATCGACCGCGTCAAGGGCCTCGTGGAGGCGGCCT 420 consensus_7231#1 ------------------------------------------------------------ consensus_7231#0 GCCCGGGCGTCGTCTCCTGCGCCGACGTCCTCGCGCTCGCCGCCCGCGACGCCGTCGCCG 480 consensus_7231#1 ------------------------------------------------------------ consensus_7231#0 CCATCGGAGGGCCGTCGTGGCGCGTGCCGACGGGGAGGAGGGATGGCACGGTGTCGAGCA 540 consensus_7231#1 ------------------------------------------------------------ consensus_7231#0 TGCAGGAGGCGCTCGCGGAGATCCCCTCGCCGGCGATGAGCTTCCCGGAGCTCGCCGGCT 600 consensus_7231#1 ------------------------------------------------------------ consensus_7231#0 TGTTCGCCACCAAGGGCCTCAGCGTGCGTGACCTTGTCTGGCTGTCAGGCGCGCACACCA 660 consensus_7231#1 ------------------------------------------------------------ consensus_7231#0 TCGGCATCGCCCACTGCTCGTCCTTCGCCGACCGCCTCTACAACGGCGGCGGCGGCGCCG 720 consensus_7231#1 ------------------------------------------------------------ consensus_7231#0 GCAATGCCAACGGCAACAACACCGATCCGCCGCCGCTGGACGCCGCCTACGCCGCCAACC 780 consensus_7231#1 ------------------------------------------------------------ consensus_7231#0 TGCGTGAGCGCAAGTGCAGGACGGCCGGCGACGGCGTGGTGGAGATGGACCCCGGCAGCC 840 consensus_7231#1 ------------------------------------------------------------ consensus_7231#0 ACCTGACGTTCGATCTCGGCTACTACCGCGCGGTGCTCAGGCACCGCGGCCTGCTCCGGT 900 consensus_7231#1 ------------------------------------------------------------ consensus_7231#0 CCGACGCCGCGCTAGTCACCGACGCGGCGGCGCGGGCCGACATCGCCGGCGCCGTGGCGA 960 consensus_7231#1 ------------------------------------------------------------ consensus_7231#0 GCCCGCCGGAGGTGTTCTTCCAGGTGTTCGGCCGGTCGATGGCGACGCTGGGCGCGGTGC 1020 consensus_7231#1 ------------------------------------------------------------ consensus_7231#0 AGGTCAAGACCGGCTCCGATGGGGAGATCAGGAGGAACTGCGCTGTCGTGAACAGCGGCC 1080 consensus_7231#1 ------------------------------------------------------------ consensus_7231#0 ACTGATCAAAAGGGGAGTTGATTTGCAATTCTTCCTGGGATAGCGTGATTTTGTTCTTAC 1140 consensus_7231#1 -------------------------CAATTCTNCCTGGGATNGCGTGATTTTGTTCTTNC 35 ******* ******** **************** * consensus_7231#0 GATTTCTTCACTTTTGTCATTTGAATTTGGTGAAATTCTAGTAGAAATTTTGCTGCGCGT 1200 consensus_7231#1 GATTTCTTCNCTTTTGTCATTTGAATTTGGTGAAATTCTNGTNGAAATTTTTNTGCNCGT 95 ********* ***************************** ** ******** *** *** consensus_7231#0 GTTCTTGTTGTGTTCAGTGTCGTTGCTGCAACCGGCAAAGCTGTGTTCTTTTGCTTTGAA 1260 consensus_7231#1 GTTCTTGTTGTGTTCAGTGTCGTTGCTGCANCCGGCAAAGCTGTGTTCTTTTGCTTTGAA 155 ****************************** ***************************** consensus_7231#0 GTGTGCTGTAGTAATTTATAGCTGATGAGAAAAAAAAAAACAGAATACATACAGTTTACA 1320 consensus_7231#1 GTGTGCTGTAGTAATTTNTAGCTGNTGGGAAAANAAAAN-CAGNATACATACAGTTTNCN 214 ***************** ****** ** ***** **** *** ************* * consensus_7231#0 GTATGAACAGAAAATAAGACAAAATTCTCCGAATTAGCGTCAAATGAAGTCTGTATGCAT 1380 consensus_7231#1 GTNTGAACAGAAAATAAGNCAAAATTCTCCGAATTAGCGTCAAATGAAGTCTGTATGCAT 274 ** *************** ***************************************** consensus_7231#0 GCACAGGTAATAACAAAGCTTGCAAATAC------------------------------- 1409 consensus_7231#1 GCACAGGTAATNACAAAGCTTGCAAATACATCAAAAGACAGCCATGATGTATGCTACTTT 334 *********** ***************** consensus_7231#0 -------------------------------------------------------- consensus_7231#1 ATTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 390 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||