These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7242#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2400 fasta sequence [TGGACTGAAGGAGTAGAAACTTTTTTCTCGAGGGTTGGATAAAAGCATAAACCTCACTTCCAACGGAAACCTCGAGAGCGCTCTCTCGCTCGCCCATACTCTCCTCCGCCGCGTCTCCATCCTCTCCTCGCCGCCGCCGCCGTCGTATTCTCCTCCGTTCCGCTCCACCACTCCGGCGGACCAGCCATGGAGGAGTACCTGGCTAACATGAAGACCCTCCGCTCCTACATGAGCGATCTGGAGGAGGAAGCGACGAAGCGGTCGGCGGAGGAGCAGCGGCAGCGCACTGCCATCGACGCCCACGGCGCCGACCTCGCCCAAGTGAGGGCGCAGACGAAGCAGGCTAGCGAGGAGTCCGAGCAGCTTTCGAAGGCGAGGGCGGAGCCCTGCGTAGAGATATCCGAGAAGCAGGGCAGGATTGCCACGCTGGAGATTGAGTGCGCCACGCTGAAGCAGACCTTGGAGCTCCTCCATCAGGAAATCGCAAGTACTTCTTCAAAACTCATTGAGAAAAGATTGTTCTACACAAAGACAATAGAAAGCCTGACGGTCAAATTACAAGAGCAACAGGAATGGCTTGGTGCATTTAAGCTTAAGGTTGAAGAGTCTCAGAGCAAGCAAAACCTTCAAGGTACAGCTCTTCTGAATATGAAGTGAAATAAATAGTGGCTCCAATGCTATTTTTTCCTATCTTACTTAAGTCCTTTCATGGGTTTTCTGTATCCATGTTGGTAAGCGTCAATATGTGGTATGTTGATTGTGCAGTTTTTTTTTTTCATTATATAGTTGAAACATGTTATTGTGCAGTCCAGTCAGTTCTAATTGCATCAATCTGTGTTTCTGAGTTAGCTACCATGAAAGGTGCTGAGGAAGGCCATGAAGCAAAGCAGACTGCATGCTTTTAATATGTGCATGCCCTACACAAGTACACATATGACATATGACAAATGCATTTGCACTGATTGCAATTCTTGGAAGTTGGGGGCATGAGTTACACTTCCTGGCTCAATCTGTGAAATTTCAGACTTGTAGATTTATTATGCACATGTGGATTAGAACTAAAAGCTGTTATACTTTGACTTTGGTAGTATCAAAGGAGGAGCCGATGTGCAGCTGCACCAGTTCAGGCTTTGTGTGGAAGTGGCACCAATTGATAAGAAGATATCTGGATTCTGGAGACTTCTATAAATTGCATAGCATTTCTATCTAAAAGTTGGCATGAAATTTAGATACCTAAATTAATATTTGATTACTATACGTAGCTTAGATTATTAGGAAGCCGACCTTGTATAAAGAGGGATCAGGTTAAGTGTTGATCAAGAAGGAATAGCGAAGTCCATTCTCCTATGTATTCAGCTCAGGCATATGCACCTGCCCTTTTCTGGCCAAACCACTGTTTATTCTAGAAATCATTGATTGATGAGGTCCTCCCCCACTCATTTTTGCATCATATGCTCTCTTTACAAAGGCTATAACAAAATCATATAATGTTTATTTACATATCTAACTAATTCCTCCTTTTTGATTAACTGGTGAGCATGGAGTAGAAGTTTCTGCAATCTTCTTTTCTGGACAGTCTTCCTCACCACCCTCCCTCCCAGAGTCTCAGTACAGTGCCAACCTTTGTTAATCTAAAAGCACCAATTGATATGGACAAAGCCATGGAATACTTAACTCATGTGGGAGCCTAGATAAGGGAAATGACATTGGAAGCAAGCAAGGAGAACTCAGGATTCAACTGGAGTCAACTAAACATAAGATCGACGAGATCAAAGAAAAACAATCAGCACTTCTTACGGAAATCAGCGAAGTACTCCAATTCTGACACCCATCCTTAGATCTATGACATCTGCAAGTTGTATTATGCCTATTTTTGGGTGAAACTGAAAGGATTATGTCTTTACTTTTCAGAGTAAGCAGGTCATAGAGCAAGAGAAAAATGCAATTTCTGGCTTTCTTGCTCCACTACAACAGATGGATATGAAATCCTTAGAGGAGG-AACACAAAGCTCTACAAGC-TGATAAAGCTGGAGAAATTGAGTACTTTCAGTCTCTTG-AAGAACGTATA-AATGAAATGAAGGGAGTTTCTGATGCAGTAAAATGCCGTTGCGGATTGGAGTACAAGGTCGAACTAGGTGGCGAAGCCATGGATCTAAGCTAAACTTGTCCGTAGTGCGTAATGGCCACAGTTACACACTGTAAAATGCTTATATACATGTTACTGCTTTGGGATAGTTTGACAACTTCATATCGAGATTATATTGATGACGTCTAGTCGTCTACCAGTGGAAAGAGATACTAAATTGCATAAGCTAGAACATTGTCAATGAAGTTATCCAGAGTAGATTATATTCATTGGAGAGATGTAACTGGTTGAGATAAGCTAAAATTTAAAAAAAAA] [+] EMBL CF292691 [TGGACTGAAGGAGTAGAAACTTTTTTCTCGAGGGTTGGATAAAAGCATAAACCTCACTTCCAACGGAAACCTCGAGAGCGCTCTCTCGCTCGCCCATACTCTCCTCCGCCGCGTCTCCATCCTCTCCTCGCCGCCGCCGCCGTCGTATTCTCCTCCGTTCCGCTCCACCACTCCGGCGGACCAGCCATGGAGGAGTACCTGGCTAACATGAAGACCCTCCGCTCCTACATGAGCGATCTGGAGGAGGAAGCGACGAAGCGGTCGGCGGAGGAGCAGCGGCAGCGCACTGCCATCGACGCCCACGGCGCCGACCTCGCCCAAGTGAGGGCGCAGACGAAGCAGGCTAGCGAGGAGTCCGAGCAGCTTTCGAAGGCGAGGGCGGAGCCCTGCGTAGAGATATCCGAGAAGCAGGGCAGGATTGCCACGCTGGAGATTGAGTGCGCCACGCTGAAGCAGACCTTGGAGCTCCTCCATCAGGAAATCGCAAGTACTTCTTCAAAACTCATTGAGAAAAGATTGTTCTACACAAAGACAATAGAAAGCCTGACGGTCAAATTACAAGAGCAACAGGAATGGCTTGGTGCATTTAAGCTTAAGGTTGAAGAGTCTCA ] [+] EMBL AK069354 [ TTCTCGAGGGTTGGATAAAAGCATAAACCTCACTTCCAACGGAAACCTCGAGAGCGCTCTCTCGCTCGCCCATACTCTCCTCCGCCGCGTCTCCATCCTCTCCTCGCCGCCGCCGCCGTCGTATTCTCCTCCGTTCCGCTCCACCACTCCGGCGGACCAGCCATGGAGGAGTACCTGGCTAACATGAAGACCCTCCGCTCCTACATGAGCGATCTGGAGGAGGAAGCGACGAAGCGGTCGGCGGAGGAGCAGCGGCAGCGCACTGCCATCGACGCCCACGGCGCCGACCTCGCCCAAGTGAGGGCGCAGACGAAGCAGGCTAGCGAGGAGTCCGAGCAGCTTTCGAAGGCGAGGGCGGAGCTCTGCGTAGAGATATCCGAGAAGCAGGGCAGGATTGCCACGCTGGAGATTGAGTGCGCCACGCTGAAGCAGACCTTGGAGCTCCTCCATCAGGAAATCGCAAGTACTTCTTCAAAACTCATTGAGAAAAGATTGTTCTACACAAAGACAATAGAAAGCCTGACGGTCAAATTACAAGAGCAACAGGAATGGCTTGGTGCATTTAAGCTTAAGGTTGAAGAGTCTCAGAGCAAGCAAAACCTTCAAGGTACAGCTCTTCTGAATATGAAGTGAAATAAATAGTGGCTCCAATGCTATTTTTTCCTATCTTACTTAAGTCCTTTCATGGGTTTTCTGTATCCATGTTGGTAAGCGTCAATATGTGGTATGTTGATTGTGCAGTTTTTTTTTTTCATTATATAGTTGAAACATGTTATTGTGCAGTCCAGTCAGTTCTAATTGCATCAATCTGTGTTTCTGAGTTAGCTACCATGAAAGGTGCTGAGGAAGGCCATGAAGCAAAGCAGACTGCATGCTTTTAATATGTGCATGCCCTACACAAGTACACATATGACATATGACAAATGCATTTGCACTGATTGCAATTCTTGGAAGTTGGGGGCATGAGTTACACTTCCTGGCTCAATCTGTGAAATTTCAGACTTGTAGATTTATTATGCACATGTGGATTAGAACTAAAAGCTGTTATACTTTGACTTTGGTAGTATCAAAGGAGGAGCCGATGTGCAGCTGCACCAGTTCAGGCTTTGTGTGGAAGTGGCACCAATTGATAAGAAGATATCTGGATTCTGGAGACTTCTATAAATTGCATAGCATTTCTATCTAAAAGTTGGCATGAAATTTAGATACCTAAATTAATATTTGATTACTATACGTAGCTTAGATTATTAGGAAGCCGACCTTGTATAAAGAGGGATCAGGTTAAGTGTTGATCAAGAAGGAATAGCGAAGTCCATTCTCCTATGTATTCAGCTCAGGCATATGCACCTGCCCTTTTCTGGCCAAACCACTGTTTATTCTAGAAATCATTGATTGATGAGGTCCTCCCCCACTCATTTTTGCATCATATGCTCTCTTTACAAAGGCTATAACAAAATCATATAATGTTTATTTACATATCTAACTAATTCCTCCTTTTTGATTAACTGGTGAGCATGGAGTAGAAGTTTCTGCAATCTTCTTTTCTGGACAGTCTTCCTCACCACCCTCCCTCCCAGAGTCTCAGTACAGTGCCAACCTTTGTTAATCTAAAAGCACCAATTGATATGGACAAAGCCATGGAATACTTAACTCATGTGGGAGCCTAGATAAGGGAAATGACATTGGAAGCAAGCAAGGAGAACTCAGGATTCAACTGGAGTCAACTAAACATAAGATCGACGAGATCAAAGAAAAACAATCAGCACTTCTTACGGAAATCAGCGAAGTACTCCAATTCTGACACCCATCCTTAGATCTATGACATCTGCAAGTTGTATTATGCCTATTTTTGGGTGAAACTGAAAGGATTATGTCTTTACTTTTCAGAGTAAGCAGGTCATAGAGCAAGAGAAAAATGCAATTTCTGGCTTTCTTGCTCCACTACAACAGATGGATATGAAATCCTTAGAGGAGG AACACAAAGCTCTACAAGC TGATAAAGCTGGAGAAATTGAGTACTTTCAGTCTCTTG AAGAACGTATA AATGAAATGAAGGGAGTTTCTGATGCAGTAAAATGCCGTTGCGGATTGGAGTACAAGGTCGAACTAGGTGGCGAAGCCATGGATCTAAGCTAAACTTGTCCGTAGTGCGTAATGGCCACAGTTACACACTGTAAAATGCTTATATACATGTTACTGCTTTGGGATAGTTTGACAACTTCATATCGAGATTATATTGATGACGTCTAGTCGTCTACCAGTGGAAAGAGATACTAAATTGCATAAGCTAGAACATTGTCAATGAAGTTATCCAGAGTA ] [+] EMBL BI806286 [ TTCTGGCTTTCTTGCTCCCCTACGACAGATGGATATGAAATCCTTAGAGGAGGTAACACCAAGCTCTACAAGCATGATAAAGCTGGAGAAATTGAGTACTTTCAGTCTCTTGTAAGAACGTATATAATGAAATGAAGGGAGTTTCTGATGCAGTAAAATGCCGTTGCGGANTGGAGTACAAGGTCGAACTAGGTGGCGAAGCCATGGATCTAAGCTAAACTTGTCCGTAGTGCGTAATGGCCACAGTTACAC CTGTAAAATGCTTATATACATGTTACTGCTTTGGGATAGTTTGAC ACTTCATATCGAGATTATATTGATGACGTCTAGTCGTCTACC GTGGAAAGAGATACTAAATTGCATAAGCTAGAACCTTGTC ATGAAGTTATCC GAGTAGATTATATTCATTGGAGAGATGTAACTGGTTGAGATAAGCTAAAATTTAAAAAAAAA] consensusID : consensus_7242#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence [AACATAAGATCGACGAGATCAAAGAAAAACAATCAGCACTTCTTACGGAAATCAGCGAAAGTAAGCAGGTCATAGAGCAAGAGAAAAATGCAATTTCTGGCTTTCTTGCTCCACTACAACAGATGGATATGAAATCCTTAGAGGAGGAACACAAAGCTCTACAAGCTGATAAAGCTGGAGAAATTGAGTACTTTCAGTCTCTTGAAGAACGTATAAATGAAATGAAGGGAGTTTCTGATGCAGTAAAATGCCGTTGCGGATTGGAGTACAAGGTCGAAATAGGTGGCGAAGCCATGGATCTAAGCTAAACTTGTCCGTAGTGCGTAATGGCCACAGTTACACACTGTAAAATGCTTATATACATGTTACTGCTTTGGGATAGTTTGACAACTTCATATCGAGATTATATTGATAACGTCTAGTCGTCTACCAAAAA] [-] EMBL CF292692 [AACATAAGATCGACGAGATCAAAGAAAAACAATCAGCACTTCTTACGGAAATCAGCGAAAGTAAGCAGGTCATAGAGCAAGAGAAAAATGCAATTTCTGGCTTTCTTGCTCCACTACAACAGATGGATATGAAATCCTTAGAGGAGGAACACAAAGCTCTACAAGCTGATAAAGCTGGAGAAATTGAGTACTTTCAGTCTCTTGAAGAACGTATAAATGAAATGAAGGGAGTTTCTGATGCAGTAAAATGCCGTTGCGGATTGGAGTACAAGGTCGAAATAGGTGGCGAAGCCATGGATCTAAGCTAAACTTGTCCGTAGTGCGTAATGGCCACAGTTACACACTGTAAAATGCTTATATACATGTTACTGCTTTGGGATAGTTTGACAACTTCATATCGAGATTATATTGATAACGTCTAGTCGTCTACCAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7242#0 TGGACTGAAGGAGTAGAAACTTTTTTCTCGAGGGTTGGATAAAAGCATAAACCTCACTTC 60 consensus_7242#1 ------------------------------------------------------------ consensus_7242#0 CAACGGAAACCTCGAGAGCGCTCTCTCGCTCGCCCATACTCTCCTCCGCCGCGTCTCCAT 120 consensus_7242#1 ------------------------------------------------------------ consensus_7242#0 CCTCTCCTCGCCGCCGCCGCCGTCGTATTCTCCTCCGTTCCGCTCCACCACTCCGGCGGA 180 consensus_7242#1 ------------------------------------------------------------ consensus_7242#0 CCAGCCATGGAGGAGTACCTGGCTAACATGAAGACCCTCCGCTCCTACATGAGCGATCTG 240 consensus_7242#1 ------------------------------------------------------------ consensus_7242#0 GAGGAGGAAGCGACGAAGCGGTCGGCGGAGGAGCAGCGGCAGCGCACTGCCATCGACGCC 300 consensus_7242#1 ------------------------------------------------------------ consensus_7242#0 CACGGCGCCGACCTCGCCCAAGTGAGGGCGCAGACGAAGCAGGCTAGCGAGGAGTCCGAG 360 consensus_7242#1 ------------------------------------------------------------ consensus_7242#0 CAGCTTTCGAAGGCGAGGGCGGAGCCCTGCGTAGAGATATCCGAGAAGCAGGGCAGGATT 420 consensus_7242#1 ------------------------------------------------------------ consensus_7242#0 GCCACGCTGGAGATTGAGTGCGCCACGCTGAAGCAGACCTTGGAGCTCCTCCATCAGGAA 480 consensus_7242#1 ------------------------------------------------------------ consensus_7242#0 ATCGCAAGTACTTCTTCAAAACTCATTGAGAAAAGATTGTTCTACACAAAGACAATAGAA 540 consensus_7242#1 ------------------------------------------------------------ consensus_7242#0 AGCCTGACGGTCAAATTACAAGAGCAACAGGAATGGCTTGGTGCATTTAAGCTTAAGGTT 600 consensus_7242#1 ------------------------------------------------------------ consensus_7242#0 GAAGAGTCTCAGAGCAAGCAAAACCTTCAAGGTACAGCTCTTCTGAATATGAAGTGAAAT 660 consensus_7242#1 ------------------------------------------------------------ consensus_7242#0 AAATAGTGGCTCCAATGCTATTTTTTCCTATCTTACTTAAGTCCTTTCATGGGTTTTCTG 720 consensus_7242#1 ------------------------------------------------------------ consensus_7242#0 TATCCATGTTGGTAAGCGTCAATATGTGGTATGTTGATTGTGCAGTTTTTTTTTTTCATT 780 consensus_7242#1 ------------------------------------------------------------ consensus_7242#0 ATATAGTTGAAACATGTTATTGTGCAGTCCAGTCAGTTCTAATTGCATCAATCTGTGTTT 840 consensus_7242#1 ------------------------------------------------------------ consensus_7242#0 CTGAGTTAGCTACCATGAAAGGTGCTGAGGAAGGCCATGAAGCAAAGCAGACTGCATGCT 900 consensus_7242#1 ------------------------------------------------------------ consensus_7242#0 TTTAATATGTGCATGCCCTACACAAGTACACATATGACATATGACAAATGCATTTGCACT 960 consensus_7242#1 ------------------------------------------------------------ consensus_7242#0 GATTGCAATTCTTGGAAGTTGGGGGCATGAGTTACACTTCCTGGCTCAATCTGTGAAATT 1020 consensus_7242#1 ------------------------------------------------------------ consensus_7242#0 TCAGACTTGTAGATTTATTATGCACATGTGGATTAGAACTAAAAGCTGTTATACTTTGAC 1080 consensus_7242#1 ------------------------------------------------------------ consensus_7242#0 TTTGGTAGTATCAAAGGAGGAGCCGATGTGCAGCTGCACCAGTTCAGGCTTTGTGTGGAA 1140 consensus_7242#1 ------------------------------------------------------------ consensus_7242#0 GTGGCACCAATTGATAAGAAGATATCTGGATTCTGGAGACTTCTATAAATTGCATAGCAT 1200 consensus_7242#1 ------------------------------------------------------------ consensus_7242#0 TTCTATCTAAAAGTTGGCATGAAATTTAGATACCTAAATTAATATTTGATTACTATACGT 1260 consensus_7242#1 ------------------------------------------------------------ consensus_7242#0 AGCTTAGATTATTAGGAAGCCGACCTTGTATAAAGAGGGATCAGGTTAAGTGTTGATCAA 1320 consensus_7242#1 ------------------------------------------------------------ consensus_7242#0 GAAGGAATAGCGAAGTCCATTCTCCTATGTATTCAGCTCAGGCATATGCACCTGCCCTTT 1380 consensus_7242#1 ------------------------------------------------------------ consensus_7242#0 TCTGGCCAAACCACTGTTTATTCTAGAAATCATTGATTGATGAGGTCCTCCCCCACTCAT 1440 consensus_7242#1 ------------------------------------------------------------ consensus_7242#0 TTTTGCATCATATGCTCTCTTTACAAAGGCTATAACAAAATCATATAATGTTTATTTACA 1500 consensus_7242#1 ------------------------------------------------------------ consensus_7242#0 TATCTAACTAATTCCTCCTTTTTGATTAACTGGTGAGCATGGAGTAGAAGTTTCTGCAAT 1560 consensus_7242#1 ------------------------------------------------------------ consensus_7242#0 CTTCTTTTCTGGACAGTCTTCCTCACCACCCTCCCTCCCAGAGTCTCAGTACAGTGCCAA 1620 consensus_7242#1 ------------------------------------------------------------ consensus_7242#0 CCTTTGTTAATCTAAAAGCACCAATTGATATGGACAAAGCCATGGAATACTTAACTCATG 1680 consensus_7242#1 ------------------------------------------------------------ consensus_7242#0 TGGGAGCCTAGATAAGGGAAATGACATTGGAAGCAAGCAAGGAGAACTCAGGATTCAACT 1740 consensus_7242#1 ------------------------------------------------------------ consensus_7242#0 GGAGTCAACTAAACATAAGATCGACGAGATCAAAGAAAAACAATCAGCACTTCTTACGGA 1800 consensus_7242#1 ------------------------------------------------------------ consensus_7242#0 AATCAGCGAAGTACTCCAATTCTGACACCCATCCTTAGATCTATGACATCTGCAAGTTGT 1860 consensus_7242#1 ------------------------------AACATAAGATCGACGAGATCA--AAGAAAA 28 * * * ***** * ** *** *** consensus_7242#0 ATTATGCCTATTTTTGGGTGAAACTGAAAGGATTATGTCTTTACTTTTCAGAGTAAGCAG 1920 consensus_7242#1 ACAATCAGCACTTCTTACGGAAATCAGCG--------------------AAAGTAAGCAG 68 * ** * ** * **** * ********* consensus_7242#0 GTCATAGAGCAAGAGAAAAATGCAATTTCTGGCTTTCTTGCTCCACTACAACAGATGGAT 1980 consensus_7242#1 GTCATAGAGCAAGAGAAAAATGCAATTTCTGGCTTTCTTGCTCCACTACAACAGATGGAT 128 ************************************************************ consensus_7242#0 ATGAAATCCTTAGAGGAGGAACACAAAGCTCTACAAGCTGATAAAGCTGGAGAAATTGAG 2040 consensus_7242#1 ATGAAATCCTTAGAGGAGGAACACAAAGCTCTACAAGCTGATAAAGCTGGAGAAATTGAG 188 ************************************************************ consensus_7242#0 TACTTTCAGTCTCTTGAAGAACGTATAAATGAAATGAAGGGAGTTTCTGATGCAGTAAAA 2100 consensus_7242#1 TACTTTCAGTCTCTTGAAGAACGTATAAATGAAATGAAGGGAGTTTCTGATGCAGTAAAA 248 ************************************************************ consensus_7242#0 TGCCGTTGCGGATTGGAGTACAAGGTCGAACTAGGTGGCGAAGCCATGGATCTAAGCTAA 2160 consensus_7242#1 TGCCGTTGCGGATTGGAGTACAAGGTCGAAATAGGTGGCGAAGCCATGGATCTAAGCTAA 308 ****************************** ***************************** consensus_7242#0 ACTTGTCCGTAGTGCGTAATGGCCACAGTTACACACTGTAAAATGCTTATATACATGTTA 2220 consensus_7242#1 ACTTGTCCGTAGTGCGTAATGGCCACAGTTACACACTGTAAAATGCTTATATACATGTTA 368 ************************************************************ consensus_7242#0 CTGCTTTGGGATAGTTTGACAACTTCATATCGAGATTATATTGATGACGTCTAGTCGTCT 2280 consensus_7242#1 CTGCTTTGGGATAGTTTGACAACTTCATATCGAGATTATATTGATAACGTCTAGTCGTCT 428 ********************************************* ************** consensus_7242#0 ACCAGTGGAAAGAGATACTAAATTGCATAAGCTAGAACATTGTCAATGAAGTTATCCAGA 2340 consensus_7242#1 ACCAAAAA---------------------------------------------------- 436 **** consensus_7242#0 GTAGATTATATTCATTGGAGAGATGTAACTGGTTGAGATAAGCTAAAATTTAAAAAAAAA 2400 consensus_7242#1 ------------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||