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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7252#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1233 fasta sequence
[TCTCTTCCACCATCTCTCCTCTCCCTCCCCACAAGAAAAACCTCGCGCGAACAATGTACAGCCCTCTCGGCAGCGGCTGCGCGTTCGCGGCCGCGGCCAGCTCCGCGTTCCCGCCGGCCACCGTCCCCGGCGGGATATTCGCGGGGAGGAGGAGGAGGAGGCCGGCGAGGCTGGTTCTTGCGTGGGCGAGCTCGGATGGCTCGGACGGTGGTGGTGCCGCCGCTGGTGCAGTGGCGGCCGAGGCTTCCGCTGTGGGAGAGAGCAAAGAAGGGGAGGTGGCCAGTGGCGGAGGTTCTTCCGCTGAGTCGTCGGCGGAGAAGAAGCCGGCTCCTGTTGATCCCAAGATTGAGAAGGAGCTCAAGAAGGCAGTTCAGAAGACCGCAGCAACGTTTGCACCAAGGGCGTCCACTGCCACAAAGAACCCTGCAGTGCCTGGAACAGCTCTGTACACTATCTTTGAGGTCCAGGGATATGCCTCCATGCTGTTGGGTGGAGCCCTTTCCTTCAATCTCGTGTTCCCGTCGAATGAGCCGGACATTTGGAGGCTGATGGGAATGTGGTCCATCTGGATGTTCACTATACCTTCTCTTCGGGCCCGTGACTGCTCAAGTAAGGAGAAAGAGGCTCTCAACTACTTGTTTCTACTGGTCCCTCTAATCAACGTCATTATCCCGTTCTTCGTGAAATCCTTCGCTGTTGTCTGGTCAGCAGATACGGTTGCATTCTTTGTGATGTATGCTTGGAAGCTTGGATGGCTGCAACGGTCAGAGTGAACAATTTCCTGAACGAAGGAGCATTTGAACTGCAAATTTTGCCTAAGTGAATTTTGGAGGGCACGCTACATGCGATGAATTTTTCCTAGATTTAGTTTCGTGTACATCCATGGAGTGTAAAGAAGCTTGCTATGTAGATGTACCTTAAATTGTCAACATTAGTGTTGACTAGGAACTGGGCATCTCTCAACCTGTTATGGTTTCCCAGTAGATCATATATGTCTGCGCGCTGGCATGAAACGGTTGCCAATTGCATCTGCTTCGTTCTTGGGGCTACAATTCGCAACTGAATTTGCTATATATTTGTCGACAAATTTTCCACCAAAAATTTAACAGATGTAATTATAGTACAATCGTAGTGTAATTACACTGTAACTTGCATGTAATTACACTGTAATTATAATGTAACATGTATGTAACTTTTAAAAATCTCTCCATAACATTTATTTCGGTAAAATGG]
[+] EMBL AK065418 [TCTCTTCCACCATCTCTCCTCTCCCTCCCCACAAGAAAAACCTCGCGCGAACAATGTACAGCCCTCTCGGCAGCGGCTGCGCGTTCGCGGCCGCGGCCAGCTCCGCGTTCCCGCCGGCCACCGTCCCCGGCGGGATATTCGCGGGGAGGAGGAGGAGGAGGCCGGCGAGGCTGGTTCTTGCGTGGGCGAGCTCGGATGGCTCGGACGGTGGTGGTGCCGCCGCTGGTGCAGTGGCGGCCGAGGCTTCCGCTGTGGGAGAGAGCAAAGAAGGGGAGGTGGCCAGTGGCGGAGGTTCTTCCGCTGAGTCGTCGGCGGAGAAGAAGCCGGCTCCTGTTGATCCCAAGATTGAGAAGGAGCTCAAGAAGGCAGTTCAGAAGACCGCAGCAACGTTTGCACCAAGGGCGTCCACTGCCACAAAGAACCCTGCAGTGCCTGGAACAGCTCTGTACACTATCTTTGAGGTCCAGGGATATGCCTCCATGCTGTTGGGTGGAGCCCTTTCCTTCAATCTCGTGTTCCCGTCGAATGAGCCGGACATTTGGAGGCTGATGGGAATGTGGTCCATCTGGATGTTCACTATACCTTCTCTTCGGGCCCGTGACTGCTCAAGTAAGGAGAAAGAGGCTCTCAACTACTTGTTTCTACTGGTCCCTCTAATCAACGTCATTATCCCGTTCTTCGTGAAATCCTTCGCTGTTGTCTGGTCAGCAGATACGGTTGCATTCTTTGTGATGTATGCTTGGAAGCTTGGATGGCTGCAACGGTCAGAGTGAACAATTTCCTGAACGAAGGAGCATTTGAACTGCAAATTTTGCCTAAGTGAATTTTGGAGGGCACGCTACATGCGATGAATTTTTCCTAGATTTAGTTTCGTGTACATCCATGGAGTGTAAAGAAGCTTGCTATGTAGATGTACCTTAAATTGTCAACATTAGTGTTGACTAGGAACTGGGCATCTCTCAACCTGTTATGGTTTCCCAGTAGATCATATATGTCTGCGCGCTGGCATGAAACGGTTGCCAATTGCATCTGCTTCGTTCTTGGGGCTACAATTCGCAACTGAATTTGCTATATATTTGTCGACAAATTTTCCACCAAAAATTTAACAGATGTAATTATAGTACAATCGTAGTGTAATTACACTGTAACTTGCATGTAATTACACTGTAATTATAATGTAACATGTATGTAACTTTTAAAAATCTCTCCATAACATTTATTTCGGTAAAATGG]
[+] EMBL AK104172 [ CTCTTCCACCATCTCTCCTCTCCCTCCCCACAAGAAAAACCTCGCGCGAACAATGTACAGCCCTCTCGGCAGCGGCTGCGCGTTCGCGGCCGCGGCCAGCTCCGCGTTCCCGCCGGCCACCGTCCCCGGCGGGATATTCGCGGGGAGGAGGAGGAGGAGGCCGGCGAGGCTGGTTCTTGCGTGGGCGAGCTCGGATGGCTCGGACGGTGGTGGTGCCGCCGCTGGTGCAGTGGCGGCCGAGGCTTCCGCTGTGGGAGAGAGCAAAGAAGGGGAGGTGGCCAGTGGCGGAGGTTCTTCCGCTGAGTCGTCGGCGGAGAAGAAGCCGGCTCCTGTTGATCCCAAGATTGAGAAGGAGCTCAAGAAGGCAGTTCAGAAGACCGCAGCAACGTTTGCACCAAGGGCGTCCACTGCCACAAAGAACCCTGCAGTGCCTGGAACAGCTCTGTACACTATCTTTGAGGTCCAGGGATATGCCTCCATGCTGTTGGGTGGAGCCCTTTCCTTCAATCTCGTGTTCCCGTCGAATGAGCCGGACATTTGGAGGCTGATGGGAATGTGGTCCATCTGGATGTTCACTATACCTTCTCTTCGGGCCCGTGACTGCTCAAGTAAGGAGAAAGAGGCTCTCAACTACTTGTTTCTACTGGTCCCTCTAATCAACGTCATTATCCCGTTCTTCGTGAAATCCTTCGCTGTTGTCTGGTCAGCAGATACGGTTGCATTCTTTGTGATGTATGCTTGGAAGCTTGGATGGCTGCAACGGTCAGAGTGAACAATTTCCTGAACGAAGGAGCATTTGAACTGCAAATTTTGCCTAAGTGAATTTTGGAGGGCACGCTACATGCGATGAATTTTTCCTAGATTTAGTTTCGTGTACATCCATGGAGTGTAAAGAAGCTTGCTATGTAGATGTACCTTAAATTGTCAACATTAGTGTTGACTAGGAACTGGGCATCTCTCAACCTGTTATGGTTTCCCAGTAGATCATATATGTCTGCGCGCTGGCATGAAACGGTTGCCAATTGCATCTGCTTCGTTCTTGGGGCTACAATTCGCAACTGAATTTGCTATATATTTGTCGACAA ]
[+] EMBL AK104635 [ GGCTGCGCGTTCGCGGCCGCGGCCAGCTCCGCGTTCCCGCCGGCCACCGTCCCCGGCGGGATATTCGCGGGGAGGAGGAGGAGGAGGCCGGCGAGGCTGGTTCTTGCGTGGGCGAGCTCGGATGGCTCGGACGGTGGTGGTGCCGCCGCTGGTGCAGTGGCGGCCGAGGCTTCCGCTGTGGGAGAGAGCAAAGAAGGGGAGGTGGCCAGTGGCGGAGGTTCTTCCGCTGAGTCGTCGGCGGAGAAGAAGCCGGCTCCTGTTGATCCCAAGATTGAGAAGGAGCTCAAGAAGGCAGTTCAGAAGACCGCAGCAACGTTTGCACCAAGGGCGTCCACTGCCACAAAGAACCCTGCAGTGCCTGGAACAGCTCTGTACACTATCTTTGAGGTCCAGGGATATGCCTCCATGCTGTTGGGTGGAGCCCTTTCCTTCAATCTCGTGTTCCCGTCGAATGAGCCGGACATTTGGAGGCTGATGGGAATGTGGTCCATCTGGATGTTCACTATACCTTCTCTTCGGGCCCGTGACTGCTCAAGTAAGGAGAAAGAGGCTCTCAACTACTTGTTTCTACTGGTCCCTCTAATCAACGTCATTATCCCGTTCTTCGTGAAATCCTTCGCTGTTGTCTGGTCAGCAGATACGGTTGCATTCTTTGTGATGTATGCTTGGAAGCTTGGATGGCTGCAACGGTCAGAGTGAACAATTTCCTGAACGAAGGAGCATTTGAACTGCAAATTTTGCCTAAGTGAATTTTGGAGGGCACGCTACATGCGATGAATTTTTCCTAGATTTAGTTTCGTGTACATCCATGGAGTGTAAAGAAGCTTGCTATGTAGATGTACCTTAAATTGTCAACATTAGTGTTGACTAGGAACTGGGCATCTCTCAACCTGTTATGGTTTCCCAGTAGATCATATATGTCTGCGCGCTGGCATGAAACGGTTGCCAATTGCATCTGCTTCGTTCTTGGGGCTACAATTCGCAACTGAATTTGCTATAT ]
consensusID : consensus_7252#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 263 fasta sequence
[AGCTCGTGCCGAGAAAGGGAGGTGGCCANTGGCGGAGGTTCTTCCGCTGAGTCGTCGGCGGANAAGAAGCCGGCTCCTGTTGATCCCNANATTGAGAAGGAGCTCAANAANGCNGTTCACAAGACCGCAGCAACGTTTGCACCAANGGCGTCCACTGCCACAAACAACCCTGCAGTGCCTGGAACAGCTCTGTACACTATCTTTGAGGTCCAGNGATATGCCTCCATGCTGTTGGGTGGACCCNTTCCTTCAATCTCGTGTTC]
[+] EMBL BE228907 [AGCTCGTGCCGAGAAAGGGAGGTGGCCANTGGCGGAGGTTCTTCCGCTGAGTCGTCGGCGGANAAGAAGCCGGCTCCTGTTGATCCCNANATTGAGAAGGAGCTCAANAANGCNGTTCACAAGACCGCAGCAACGTTTGCACCAANGGCGTCCACTGCCACAAACAACCCTGCAGTGCCTGGAACAGCTCTGTACACTATCTTTGAGGTCCAGNGATATGCCTCCATGCTGTTGGGTGGACCCNTTCCTTCAATCTCGTGTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7252#0 TCTCTTCCACCATCTCTCCTCTCCCTCCCCACAAGAAAAACCTCGCGCGAACAATGTACA 60
consensus_7252#1 ------------------------------------------------------------
consensus_7252#0 GCCCTCTCGGCAGCGGCTGCGCGTTCGCGGCCGCGGCCAGCTCCGCGTTCCCGCCGGCCA 120
consensus_7252#1 ------------------------------------------------------------
consensus_7252#0 CCGTCCCCGGCGGGATATTCGCGGGGAGGAGGAGGAGGAGGCCGGCGAGGCTGGTTCTTG 180
consensus_7252#1 ------------------------------------------------------------
consensus_7252#0 CGTGGGCGAGCTCGGATGGCTCGGACGGTGGTGGTGCCGCCGCTGGTGCAGTGGCGGCCG 240
consensus_7252#1 ------------------------------------------------------------
consensus_7252#0 AGGCTTCCGCTGTGGGAGAGAGCAAAGAAGGGGAGGTGGCCAGTGGCGGAGGTTCTTCCG 300
consensus_7252#1 --------------AGCTCGTGCCGAGAAAGGGAGGTGGCCANTGGCGGAGGTTCTTCCG 46
* * ** **** ************ *****************
consensus_7252#0 CTGAGTCGTCGGCGGAGAAGAAGCCGGCTCCTGTTGATCCCAAGATTGAGAAGGAGCTCA 360
consensus_7252#1 CTGAGTCGTCGGCGGANAAGAAGCCGGCTCCTGTTGATCCCNANATTGAGAAGGAGCTCA 106
**************** ************************ * ****************
consensus_7252#0 AGAAGGCAGTTCAGAAGACCGCAGCAACGTTTGCACCAAGGGCGTCCACTGCCACAAAGA 420
consensus_7252#1 ANAANGCNGTTCACAAGACCGCAGCAACGTTTGCACCAANGGCGTCCACTGCCACAAACA 166
* ** ** ***** ************************* ****************** *
consensus_7252#0 ACCCTGCAGTGCCTGGAACAGCTCTGTACACTATCTTTGAGGTCCAGGGATATGCCTCCA 480
consensus_7252#1 ACCCTGCAGTGCCTGGAACAGCTCTGTACACTATCTTTGAGGTCCAGNGATATGCCTCCA 226
*********************************************** ************
consensus_7252#0 TGCTGTTGGGTGGAGCCCTTTCCTTCAATCTCGTGTTCCCGTCGAATGAGCCGGACATTT 540
consensus_7252#1 TGCTGTTGGGTGGA-CCCNTTCCTTCAATCTCGTGTTC---------------------- 263
************** *** *******************
consensus_7252#0 GGAGGCTGATGGGAATGTGGTCCATCTGGATGTTCACTATACCTTCTCTTCGGGCCCGTG 600
consensus_7252#1 ------------------------------------------------------------
consensus_7252#0 ACTGCTCAAGTAAGGAGAAAGAGGCTCTCAACTACTTGTTTCTACTGGTCCCTCTAATCA 660
consensus_7252#1 ------------------------------------------------------------
consensus_7252#0 ACGTCATTATCCCGTTCTTCGTGAAATCCTTCGCTGTTGTCTGGTCAGCAGATACGGTTG 720
consensus_7252#1 ------------------------------------------------------------
consensus_7252#0 CATTCTTTGTGATGTATGCTTGGAAGCTTGGATGGCTGCAACGGTCAGAGTGAACAATTT 780
consensus_7252#1 ------------------------------------------------------------
consensus_7252#0 CCTGAACGAAGGAGCATTTGAACTGCAAATTTTGCCTAAGTGAATTTTGGAGGGCACGCT 840
consensus_7252#1 ------------------------------------------------------------
consensus_7252#0 ACATGCGATGAATTTTTCCTAGATTTAGTTTCGTGTACATCCATGGAGTGTAAAGAAGCT 900
consensus_7252#1 ------------------------------------------------------------
consensus_7252#0 TGCTATGTAGATGTACCTTAAATTGTCAACATTAGTGTTGACTAGGAACTGGGCATCTCT 960
consensus_7252#1 ------------------------------------------------------------
consensus_7252#0 CAACCTGTTATGGTTTCCCAGTAGATCATATATGTCTGCGCGCTGGCATGAAACGGTTGC 1020
consensus_7252#1 ------------------------------------------------------------
consensus_7252#0 CAATTGCATCTGCTTCGTTCTTGGGGCTACAATTCGCAACTGAATTTGCTATATATTTGT 1080
consensus_7252#1 ------------------------------------------------------------
consensus_7252#0 CGACAAATTTTCCACCAAAAATTTAACAGATGTAATTATAGTACAATCGTAGTGTAATTA 1140
consensus_7252#1 ------------------------------------------------------------
consensus_7252#0 CACTGTAACTTGCATGTAATTACACTGTAATTATAATGTAACATGTATGTAACTTTTAAA 1200
consensus_7252#1 ------------------------------------------------------------
consensus_7252#0 AATCTCTCCATAACATTTATTTCGGTAAAATGG 1233
consensus_7252#1 ---------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||