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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7254#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1198 fasta sequence
[GTAAAAAACGACGGCCCAGTAAGCGGCGCGTTAATCCGACTCCCCTATAGGGCCCAATTGGGGTTACGGGCCCCCCCCCTCAAGTTTNNNNNNNNNNNNNNNNNNNAACAGAAATTTCAAATNTTCTGTTGTCCAAAGCAAATCACCAATACTAAAAATGCAGTCTTACAGAATCAAATATCACTATAGAAATTTCTGTTGTGTAAAACAAATCAACACTAAAAGTGCAACCTCAAAGGATCAAATATCATCCACAAAATATGAAGTTAAACATCACAAATATCCAGGGCATCCAAGTGACAGACTAANAATTAACGAAGCTAGAAAATATCTTCTATGCAATGATGATTACAGAACAGAGTATTTCAAAGGTCCATTCGTTTCATTGACTCGTCCAAGTTCATGGAATCATCAATAACCAGATCCTTCATTTGGACATCCATAAGCTTCCACAATCCATTGAATCCTCTAGGCCCAGGTTCGGTGCTCACGGGCGAGAGAAACCCAGCTGGACGAAGGTGGCGATGTGGCTGGGTGTCCTCCGGAGCCCTCATCGTTGCTGCCGGTGGAGTGTCCTCCGGAACACCTCGCCGGTCACTGCTCCGCCGGTTGGCCATCAAGCAGATAGCCGCCGCCCACTGGTGCCTCCATCCACCGCTGCCACGGGTAGAGCACCTCGTCGGTCACTGCTCCGCCGCCTGCAGGTAGAGTGCACACCGACGGTGGAGCACGGTGCCGCGTCGCCTGAAGTCGCCGCCGCTGCCGCGTGCGAGACGAGAGCACACCTAGGGTCAATCCACGTGGACCCTAGGGTTCACTGGGTGTCAGCCCTTTGTTCCCTAAAAATATATGGGCCAACCCAAGAACCTTTTGGTGCCAAATTTTTAGGGTCGGCCAGCGCACCTAATGGGTCGATCTGCCCCCTTTGCAGGCTGAGGTGTAGCATTATATAACACTAACTAAACAGAGACGATTTTGCTATATATTTGTCGACAAATTTTTCCCTAAAAATTTGACAGATGTAATTACAGTACAATCGTAGTGTAATTACACTATAACTTCTATGTAATCACACTGTAACTATAGTGTAACTTGTATGTAACTTTCAAAAATCTCTCCGTAATATGTTATTTCGGTAAAATGGAGGTCGTGGGAACAAATTCTTTCACATATGTGTGTGCTATGATTTGTTTTCTTC]
[-] EMBL BE040590 [GTAAAAAACGACGGCCCAGTAAGCGGCGCGTTAATCCGACTCCCCTATAGGGCCCAATTGGGGTTACGGGCCCCCCCCCTCAAGTTTNNNNNNNNNNNNNNNNNNNAACAGAAATTTCAAATNTTCTGTTGTCCAAAGCAAATCACCAATACTAAAAATGCAGTCTTACAGAATCAAATATCACTATAGAAATTTCTGTTGTGTAAAACAAATCAACACTAAAAGTGCAACCTCAAAGGATCAAATATCATCCACAAAATATGAAGTTAAACATCACAAATATCCAGGGCATCCAAGTGACAGACTAANAATTAACGAAGCTAGAAAATATCTTCTATGCAATGATGATTACAGAACAGAGTATTTCAAAGGTCCATTCGTTTCATTGACTCGTCCAAGTTCATGGAATCATCAATAACCAGATCCTTCATTTGGACATCCATAAGCTTCCACAATCCATTGAATCCTCTAGGCCCAGGTTCGGTGCTCACGGGCGAGAGAAACCCAGCTGGACGAAGGTGGCGATGTGGCTGGGTGTCCTCCGGAGCCCTCATCGTTGCTGCCGGTGGAGTGTCCTCCGGAACACCTCGCCGGTCACTGCTCCGCCGGTTGGCCATCAAGCAGATAGCCGCCGCCCACTGGTGCCTCCATCCACCGCTGCCACGGGTAGAGCACCTCGTCGGTCACTGCTCCGCCGCCTGCAGGTAGAGTGCACACCGACGGTGGAGCACGGTGCCGCGTCGCCTGAAGTCGCCGCCGCTGCCGCGTGCGAGACGAGAGCACACCTAGGGTCAAT ]
[-] EMBL AK059724 [ AAGCAAATCAACAATACTAAAAATGCAGTCTTACAGAATCAAATATCACTATAGAAATTTCTGTTGTGTAAAACAAATCAACACTAAAAGTGCAACCTTCAAGGATCAAATATCATCCACAAAATATGAAGTTAAACATCACAAATATCCAGGGCATCAAAGTGACAGACTAAAAATTAACGAAGCTAGAAAATATCTTCTATGCAATGATGATTACAGAACAGAGTATTTCAAAGGTCCATTCGTTTCATTGACTCGTCCAAGTTCATGGAATCATCAATAACCAGATCCTTCATTTGGACATCCATAAGCTTCCACAATCCATTGAATCCTCTAGGCCCAGGTTCGGTGCTCACGGGCGAGAGAAACCCAGCTGGACGAAGGTGGCGATGTGGCTGGGTGTCCTCCGGAGCCCTCATCGTTGCTGCCGGTGGAGTGTCCTCCGGAACACCTCGCCGGTCACTGCTCCTCCGGTTGGCCATCAAGCAGATAGCCGCCGCCCACTGGTGCCTCCATCCGCCGCTGCCACAGGTAGAGCACCTCGTCGGTCACTGCTCCGCCGCCTGCAGGTAGAGTGCACACCGACGGTGGAGCACAGTGCCGCGTCGCCTGAAGTCGCCGCCGCTGCCGCGTGCGAGACGAGAGCACACCTAGGGTCAATCCACGTGGACCCTAGGGTTCACTGGGTGTCAGCCCTTTGTTCCCTAAAAATATATGGGCCAACCCAAGAACCTTTTGGTGCCAAATTTTTAGGGTCGGCCAGCGCACCTAATGGGTCGATCTGCCCCCTTTGCAGGCTGAGGTGTAGCATTATATAACACTAACTAAACAGAGACGATTTTGCTATATATTTGTCGACAAATTTTTCCCTAAAAATTTGACAGATGTAATTACAGTACAATCGTAGTGTAATTACACTATAACTTCTATGTAATCACACTGTAACTATAGTGTAACTTGTATGTAACTTTCAAAAATCTCTCCGTAATATGTTATTTCGGTAAAATGGAGGTCGTGGGAACAAATTCTTTCACATATGTGTGTGCTATGATTTGTTTTCTTC]
consensusID : consensus_7254#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1198 fasta sequence
[TCAGTCTCACACCGCACAGAGACAGAGAAGAGCTCTAGAGAGAACGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGGGAGAATGGGGAGGAGAGCTTGCTGCGCAAAGGAAGGGATGAAGAGAGGGGCATGGACGAGCAAGGAGGACGACGTGCTTGCCTCCTACATCAAGTCCCATGGCGAAGGCAAGTGGCGCGAGGTCCCCCAACGAGCTGGTTTGAGGCGGTGCGGCAAGAGCTGCAGGCTCCGGTGGCTCAACTATCTCCGGCCTAACATCAAGCGCGGCAACATCGACGACGACGAGGAGGAGCTCATCGTCAGGCTCCACACCCTCCTCGGCAACAGGTGGTCTCTCATTGCAGGCAGGCTGCCGGGCCGAACAGACAATGAAATCAAGAACTACTGGAACAGCACGCTCAGCCGCAAGATCGGCACCGCCGCCACCGCCGCCGCCGGCAGCCGCGGTGGCAGCACGCCGGACACCGCCAGAGCGACGGACGCGGCGTCGTCCAGCTCCGTCGTGCCGCCGGGCCAGCAGCAGCAGCCAGCCTCCCGCGCCGACACCGACACAGCAACGGCAGCGGCGGCGGCGGCGGCGACGACGACCACCGTGTGGGCGCCCAAGGCCGTGCGGTGCACGCGCGGGTTCTTCTTCCACGACCGTGAAACGGCGCCGCTCGCCGCGGCGGCGCCGGCGCCGGCAGGGGAATTAGGAGACGGCGATGACGTCGACTGCGACTACTACTGCAGCGGCAGCAGCTCGGCGGCGACGACGACGTCGTCGAGCTCATTACCGGCGGTCGTCGAGCCGTGCTTCTCCGCCGGCGACGACTGGATGGACGACGTGAGAGCCTTGGCGTCGTTTCTTGACACCGACGACGCCTGGAACTTGTGTGCGTGACATTAGTTCGTCGTCCGTACGTACCTACGTATATGCATGTGTGCGTCTCATAGAATGAATATAAAATAATATTTTCTCCATCTATTTTAAGTGCAGTTGCGGGTTTCCGTATATAAAATTAACGATTTTGCTATATATTTGTCGATAAATTTTCTCCTAAAAATTTGACAGATGTAATTACAGTACAATCGTAGTATAATTACACTGTAACTTTCATGTAATTACACTGTAACTATAGTGTAACTTGTATGTAACTTTCAAAAATCTCTTTGTAATATGTTATTTCGGTAAAAAAAAA]
[+] EMBL OSC1ACTIV [TCAGTCTCACACCGCACAGAGACAGAGAAGAGCTCTAGAGAGAACGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGGGAGAATGGGGAGGAGAGCTTGCTGCGCAAAGGAAGGGATGAAGAGAGGGGCATGGACGAGCAAGGAGGACGACGTGCTTGCCTCCTACATCAAGTCCCATGGCGAAGGCAAGTGGCGCGAGGTCCCCCAACGAGCTGGTTTGAGGCGGTGCGGCAAGAGCTGCAGGCTCCGGTGGCTCAACTATCTCCGGCCTAACATCAAGCGCGGCAACATCGACGACGACGAGGAGGAGCTCATCGTCAGGCTCCACACCCTCCTCGGCAACAGGTGGTCTCTCATTGCAGGCAGGCTGCCGGGCCGAACAGACAATGAAATCAAGAACTACTGGAACAGCACGCTCAGCCGCAAGATCGGCACCGCCGCCACCGCCGCCGCCGGCAGCCGCGGTGGCAGCACGCCGGACACCGCCAGAGCGACGGACGCGGCGTCGTCCAGCTCCGTCGTGCCGCCGGGCCAGCAGCAGCAGCCAGCCTCCCGCGCCGACACCGACACAGCAACGGCAGCGGCGGCGGCGGCGGCGACGACGACCACCGTGTGGGCGCCCAAGGCCGTGCGGTGCACGCGCGGGTTCTTCTTCCACGACCGTGAAACGGCGCCGCTCGCCGCGGCGGCGCCGGCGCCGGCAGGGGAATTAGGAGACGGCGATGACGTCGACTGCGACTACTACTGCAGCGGCAGCAGCTCGGCGGCGACGACGACGTCGTCGAGCTCATTACCGGCGGTCGTCGAGCCGTGCTTCTCCGCCGGCGACGACTGGATGGACGACGTGAGAGCCTTGGCGTCGTTTCTTGACACCGACGACGCCTGGAACTTGTGTGCGTGACATTAGTTCGTCGTCCGTACGTACCTACGTATATGCATGTGTGCGTCTCATAGAATGAATATAAAATAATATTTTCTCCATCTATTTTAAGTGCAGTTGCGGGTTTCCGTATATAAAATTAACGATTTTGCTATATATTTGTCGATAAATTTTCTCCTAAAAATTTGACAGATGTAATTACAGTACAATCGTAGTATAATTACACTGTAACTTTCATGTAATTACACTGTAACTATAGTGTAACTTGTATGTAACTTTCAAAAATCTCTTTGTAATATGTTATTTCGGTAAAAAAAAA]
consensusID : consensus_7254#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 507 fasta sequence
[TGCGCACCAGATCGCTCAGTCTCACACCGCACAGAGACAGAGAAGAGCTCCGTCGTGCCGCCGGGCCAGCAGCAGCAGCCAGCCTCCCGCGCCGACACCGACACAGCAACGGCAGCGGCGGCGGCGGCGGCGACGACGACCACCGTGTGGGCGCCCAAGGCCGTGCGGTGCACGCGCGGGTTCTTCTTCCACGACCGTGAAACGGCGCCGCTCGCCGCGGCGGCGCCGGCGCCGGCAGGGGAATTAGGAGACGGCGATGACGTCGACTGCGACTACTACTGCAGCGGCAGCAGCTCGGCGGCGACGACGACGTCGTCGAGCTCATTACCGGCGGTCGTCGAGCCGTGCTTCTCCGCCGGCGACGACTGGATGGACGACGTGAGAGCCTTGGCGTCGTTTCTTGACACCGACGACGCCTGGAACTTGTGTGCGTGACATTAGTTCGTCGTCCGTACGTACCTACGTATATGCATGTGTGCGTCTCATAGAATGAATATAAAATAATAT]
[+] EMBL AK062487 [TGCGCACCAGATCGCTCAGTCTCACACCGCACAGAGACAGAGAAGAGCTCCGTCGTGCCGCCGGGCCAGCAGCAGCAGCCAGCCTCCCGCGCCGACACCGACACAGCAACGGCAGCGGCGGCGGCGGCGGCGACGACGACCACCGTGTGGGCGCCCAAGGCCGTGCGGTGCACGCGCGGGTTCTTCTTCCACGACCGTGAAACGGCGCCGCTCGCCGCGGCGGCGCCGGCGCCGGCAGGGGAATTAGGAGACGGCGATGACGTCGACTGCGACTACTACTGCAGCGGCAGCAGCTCGGCGGCGACGACGACGTCGTCGAGCTCATTACCGGCGGTCGTCGAGCCGTGCTTCTCCGCCGGCGACGACTGGATGGACGACGTGAGAGCCTTGGCGTCGTTTCTTGACACCGACGACGCCTGGAACTTGTGTGCGTGACATTAGTTCGTCGTCCGTACGTACCTACGTATATGCATGTGTGCGTCTCATAGAATGAATATAAAATAATAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7254#1 TCAGTCTCACACCGCACAGAGACAGAGAAGAGCTCTAGAGAGAACGAGAGAGAGAGACAG 60
consensus_7254#2 ------------------------------------------------------------
consensus_7254#0 ------------------------GTAAAAAACGACGGCCCAGTAAGCGGCGCGTTAATC 36
consensus_7254#1 AGAGAGAGAGAGAGAGGGAGAATGGGGAGGAGAGCTTGCTGCGCAAAGGAAGGGATGAAG 120
consensus_7254#2 ------------------------------------------------------------
consensus_7254#0 CGACTCCCCTATAGGGCCCAATTGGGGTTACGGGCCCCCCCCCTCAA-----GTTTNNNN 91
consensus_7254#1 AGAGGGGCATGGACGAGCAAGGAGGACGACGTGCTTGCCTCCTACATCAAGTCCCATGGC 180
consensus_7254#2 ------------------------------------------------------------
consensus_7254#0 NNNNNNNNNNNNNNNAACAGAAATTTCAAATNTTCTGTTGTCCAAAGCAAATC-----AC 146
consensus_7254#1 GAAGGCAAGTGGCGCGAGGTCCCCCAACGAGCTGGTTTGAGGCGGTGCGGCAAGAGCTGC 240
consensus_7254#2 ------------------------------------------------------------
consensus_7254#0 CAATACTAAAAATGCAGTCTTACAGAATCAAATAT-------CACTATAGAAATTTCTGT 199
consensus_7254#1 AGGCTCCGGTGGCTCAACTATCTCCGGCCTAACATCAAGCGCGGCAACATCGACGACGA- 299
consensus_7254#2 ------------------------------------------------------------
consensus_7254#0 TGTGTAAAACAAATCAAC-ACTAAAAGTGCAACCTCAAAGGATCAAATATCATCCACAAA 258
consensus_7254#1 -CGAGGAGGAGCTCATCGTCAGGCTCCACACCCTCCTCGGCAACAGGTGGTCTCTCATTG 358
consensus_7254#2 ------------------------------------------------------------
consensus_7254#0 ATATGAAGTTAAACATCACAAATATCCAGGGCATCCA-AGTGACAGACTAANAATTAACG 317
consensus_7254#1 CAGGCAGGCTGCCGGGCCGAACAGACAATGAAATCAAGAACTACTGGAACAGCACGCTCA 418
consensus_7254#2 ------------------------------------------------------------
consensus_7254#0 AAGCTAGAAAATATCTTCTATGCAATGATGATTACAGAACAGAGTATTTCAA-AGGTCCA 376
consensus_7254#1 GCCGCAAGATCGGCACCGCCGCCACCGCCG--CCGCCGGCAGCCGCGGTG-GCAGCACGC 475
consensus_7254#2 ------------------------------------------------TGCGCACCAGAT 12
consensus_7254#0 TTCGTTTCATTGACTCGTCCAAGTTCATGGAATCATCAATAACCAGATCCTTCATTTGGA 436
**
consensus_7254#1 CGGACA----CCGCCAGAGCG-ACGGACGCGGCGTCGTCCAGCTCCGTCGTGCCGCCGGG 530
consensus_7254#2 CGCTCA----GTCTCACACCGCACAGAGACAGAGAAG---AGCTCCGTCGTGCCGCCGGG 65
consensus_7254#0 CATCCATAAGCTTCCACAATCCATTGAATCCTCTAGGCCCAGGTTCG--GTGCTCACGGG 494
* ** ** * * ** * * ** * ** **** ****
consensus_7254#1 CCAGCAGCAGCAGCCAGCCTCCCGCGCCGACACCGACACAGCAACGGCAGCGGCGGCGGC 590
consensus_7254#2 CCAGCAGCAGCAGCCAGCCTCCCGCGCCGACACCGACACAGCAACGGCAGCGGCGGCGGC 125
consensus_7254#0 CGAG-AGAAAC--CCAGCTG-----GACGAAGGTGGCGATGTGGCTG-GGTGTCCTCCGG 545
* ** ** * * ***** * *** * * * * * * * * * *
consensus_7254#1 GGCGGCGACGACGACCACCGTGTGGGCGCCCAAGGCCGTGCGGTGCACG-CGCGGGTTCT 649
consensus_7254#2 GGCGGCGACGACGACCACCGTGTGGGCGCCCAAGGCCGTGCGGTGCACG-CGCGGGTTCT 184
consensus_7254#0 AGCCCTCATCGTTGCTGCCGGTGGAGTGTCC-------TCCGGAACACCTCGCCGGTCAC 598
** * * *** * * * ** * *** *** *** ***
consensus_7254#1 TCTTCCACGACCGTGAAACGGCGCCGCTCGCCGCGGCGGCGCCGGCGCCGGCAGGGGAAT 709
consensus_7254#2 TCTTCCACGACCGTGAAACGGCGCCGCTCGCCGCGGCGGCGCCGGCGCCGGCAGGGGAAT 244
consensus_7254#0 TGCTCCGCCGGTTGGCCATCAAGCAGATAGCCGCCGCC-CACTGGTGCCTCCATCC-ACC 656
* *** * * * ** * * ***** ** * * ** *** ** *
consensus_7254#1 TAGGAGACGGCGATGACGTCGACTGCGACTACTACTGCAGCGGCAGCAGCTCGGCGGCGA 769
consensus_7254#2 TAGGAGACGGCGATGACGTCGACTGCGACTACTACTGCAGCGGCAGCAGCTCGGCGGCGA 304
consensus_7254#0 GCTGCCACGGGTAGAGCACCTCGT-CGGTCACTGCTCCGCCGCCTGCAGGTAGAGTGC-A 714
* **** * * * * ** *** ** * ** * **** * * ** *
consensus_7254#1 CGACGACGTCGTCGAGCTCATTACCGGCGGTCGTCGAGCCGTGCTTCTCCGCCGGCGACG 829
consensus_7254#2 CGACGACGTCGTCGAGCTCATTACCGGCGGTCGTCGAGCCGTGCTTCTCCGCCGGCGACG 364
consensus_7254#0 CACCGACG--GTGGAGCACGGTGCCGCGTCGCCTGAAGTCGC-CGCCGCTGCCGCGTGCG 771
* ***** ** **** * * *** * * ** ** * * * **** **
consensus_7254#1 ACTGGATGGACGACGTGAGAGCC-TTGGCGTCGTTTCTTGACACCGACGACGCCTGGAAC 888
consensus_7254#2 ACTGGATGGACGACGTGAGAGCC-TTGGCGTCGTTTCTTGACACCGACGACGCCTGGAAC 423
consensus_7254#0 AGACGAGAGCACACCTAGGGTCAATCCACGTGGACCCTAGGGTTCACTGGGTGTCAGCCC 831
* ** * ** * * * * *** * ** * * * * *
consensus_7254#1 TTGTGTGCGTGACATTAGTTCGTCGTCCGTACGTACCTACGTATATGCATGTGTGCGTCT 948
consensus_7254#2 TTGTGTGCGTGACATTAGTTCGTCGTCCGTACGTACCTACGTATATGCATGTGTGCGTCT 483
consensus_7254#0 TTTGTTCCCTAAAAATATATGGGCCAACCCAAGAACCTTTTGGTGCCAAATTTTTAGGGT 891
** * * * * * ** * * * * * * **** * * * * * *
consensus_7254#1 CATAGAATGAATATAAAATAAT-ATTTTCTCCATCTAT---TTTAAGTGCAGTTGCGGGT 1004
consensus_7254#2 CATAGAATGAATATAAAATAAT-AT----------------------------------- 507
consensus_7254#0 CGGCCAGCGCACCTAATGGGTCGATCTGCCCCCTTTGCAGGCTGAGGTGTAGCATTATAT 951
* * * * *** **
consensus_7254#1 TTCCGTATATAAA-ATTAACGATTTTGCTATATATTTGTCGATAAATTTTCTCCTAAAAA 1063
consensus_7254#2 ------------------------------------------------------------
consensus_7254#0 AACACTAACTAAACAGAGACGATTTTGCTATATATTTGTCGACAAATTTTTCCCTAAAAA 1011
consensus_7254#1 TTTGACAGATGTAATTACAGTACAATCGTAGTATAATTACACTGTAACTTTCATGTAATT 1123
consensus_7254#2 ------------------------------------------------------------
consensus_7254#0 TTTGACAGATGTAATTACAGTACAATCGTAGTGTAATTACACTATAACTTCTATGTAATC 1071
consensus_7254#1 ACACTGTAACTATAGTGTAACTTGTATGTAACTTTCAAAAATCTCTTTGTAATATGTTAT 1183
consensus_7254#2 ------------------------------------------------------------
consensus_7254#0 ACACTGTAACTATAGTGTAACTTGTATGTAACTTTCAAAAATCTCTCCGTAATATGTTAT 1131
consensus_7254#1 TTCGGTAAAAAAAAA--------------------------------------------- 1198
consensus_7254#2 ------------------------------------------------------------
consensus_7254#0 TTCGGTAAAATGGAGGTCGTGGGAACAAATTCTTTCACATATGTGTGTGCTATGATTTGT 1191
consensus_7254#1 -------
consensus_7254#2 -------
consensus_7254#0 TTTCTTC 1198
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||