These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7269#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1021 fasta sequence [CCAGCCCGTCCGCCGCCGCCCACGCCTCCGCGAGGCTCTCCGGCGACGCAACGAAGACACGGACGCGACGGGGGCGGCGGCGGCGGCGCGCGGCGCGTGGCGCGACCCGGAGGCGACGGCGACGGCGACGGCACGGCTCACTCCTCCGGCCGCCACCTTCTCTCCGATTGCACACGCACCCATTAGACTTGGAGAAGACCAACCTCCTCCTTCCTGGGACCTTGTACCCTCTCCTTCCTGGGACCTTGTACCCTCTCCAAGAGTACTACTATGGATATGAGAGCAAGATACCTCGCTAGAAAGAGGAGGGAAGAGGAGGACGATGATATGATGTTGTTTATTTTCCCTGCACTACATTTGTTGAGTTCTAGTGGAGCAAGGGAAAAGAAGCGACACCATACATCAAAGCTAACAGGTGATGAGCGTGTTCGGGAGTTGCTTGAAGGGCATGTAAAAAATTGCCGGGTAGCATTCAGGATGGAGCCGGAAATATTTATATCTTTGGCCAATTACCTTAGAACTGAAAAGTTGGTCGATGATACTAGGATTAAAGTTGAAGAGAAGCTGGCATTCTTCTTATACATGCTTAGTCACAATGCTTCATTTGAGGATTTGCAAGAGAAATTTGGGCACAGTGGGGATAGCTTTTATCGTCACGTAAAGCATTTCTTCAACTCAGTTGTCCCTACGCTCTTGAAGCGGTTTTTGAAGCCTCCAAATCCTAATGAAGTTCATTGGAAAATAGAAAAAGATCCTAGATTTTATCCCTATTTCAAGAATTGCCTTGGTGCAATTGACGGCACCCATATACCCATATCTATATCATCTGACAAAGCAGCTCCATTTAGAAATAGGAAAAATACTCTTAGCTAAAATGTGATGATAGCTTGTGATTTTGATCTGAAGATCACTTTCATGTCTATTGGGTGGGAGGGGTCGGCTACAGATGCCAGGGTTCTTACCTCTGCAGTAAACAAAGGCTTCCAAGTACCCCCTGGAAAGTTCTATTTGGTTGATGGTG] [+] EMBL AK064122 [CCAGCCCGTCCGCCGCCGCCCACGCCTCCGCGAGGCTCTCCGGCGACGCAACGAAGACACGGACGCGACGGGGGCGGCGGCGGCGGCGCGCGGCGCGTGGCGCGACCCGGAGGCGACGGCGACGGCGACGGCACGGCTCACTCCTCCGGCCGCCACCTTCTCTCCGATTGCACACGCACCCATTAGACTTGGAGAAGACCAACCTCCTCCTTCCTGGGACCTTGTACCCTCTCCTTCCTGGGACCTTGTACCCTCTCCAAGAGTACTACTATGGATATGAGAGCAAGATACCTCGCTAGAAAGAGGAGGGAAGAGGAGGACGATGATATGATGTTGTTTATTTTCCCTGCACTACATTTGTTGAGTTCTAGTGGAGCAAGGGAAAAGAAGCGACACCATACATCAAAGCTAACAGGTGATGAGCGTGTTCGGGAGTTGCTTGAAGGGCATGTAAAAAATTGCCGGGTAGCATTCAGGATGGAGCCGGAAATATTTATATCTTTGGCCAATTACCTTAGAACTGAAAAGTTGGTCGATGATACTAGGATTAAAGTTGAAGAGAAGCTGGCATTCTTCTTATACATGCTTAGTCACAATGCTTCATTTGAGGATTTGCAAGAGAAATTTGGGCACAGTGGGGATAGCTTTTATCGTCACGTAAAGCATTTCTTCAACTCAGTTGTCCCTACGCTCTTGAAGCGGTTTTTGAAGCCTCCAAATCCTAATGAAGTTCATTGGAAAATAGAAAAAGATCCTAGATTTTATCCCTATTTCAAGAATTGCCTTGGTGCAATTGACGGCACCCATATACCCATATCTATATCATCTGACAAAGCAGCTCCATTTAGAAATAGGAAAAATACTCTTAGCTAAAATGTGATGATAGCTTGTGATTTTGATCTGAAGATCACTTTCATGTCTATTGGGTGGGAGGGGTCGGCTACAGATGCCAGGGTTCTTACCTCTGCAGTAAACAAAGGCTTCCAAGTACCCCCTGGAAAGTTCTATTTGGTTGATGGTG] [+] EMBL CB652721 [ TCCGCCAGGCTCTCCGGCGACGCAACGAAGACACGGACGCGACGGGGGCGGCGGCGGCGGCGCGCGGCGCGTGGCGCCACCCGGAGGCGACGGCGACGGCGACGGCACGGCTCACTCCTCCGGCCGCCACCTTCTCTCCGATTGCACACGCACCCATTAGACTTGGAGAAGACCAACCTCCTCCTTCCTGGGACCTTGTACCCTCTCCTTCCTGGGACCTTGTACCCTCTCCAAGAGTACTACTATGGATATGAGAGCAAGATACCTCGCTAGAAAGACGAGGGAAGAGGAGGACGATGATATGATGTTGTTTATTTTCCCTGCACTACATTTGTTGAGTTCTAGTGGAGCAAGGGAAAAGAAGCGACACCATACATCAAAGCTAACAGGTGATGAGCGTGTTCGGGAGTTGCTTGAAGGGCATGTAAAAAATTGCCGGGTAGCATTCAGGATGGAGCCGGAAATATTTATATCTTTGGCCAATTACCTTAGAACTGAAAAGTTGGTCGATGATACTATGATTAAAGTTGAAGAGAAGCTGGCATTCTTCTTATACATGCTTAGTCACAATGCTTCATTTGAGGATTTGCAAGAGAAATTTGGGCACAGTGGGGATAGCTTTTATCGTCACGTAAAGC ] [+] EMBL CA999936 [ TAGTGGAGCAAGGGAAAAGAAGCGACACCATACCTTTAAGCTAACAGGTGATGAGCGTGTTCGGGAGTTGCTTGAAGGGCATGTAAAAAATTGCCGGGTAGCATTCAGGATGGAGCCGGAAATATTTATATCTTTGGCCAATTACCTTAGAACTGAAAAGTTGGTCGATGATACTAGGATTAAAGTTGAAGAGAAGCTGGCATTCTTCTTATACATGCTTAGTCACAATGCTTCATTTGAGGATTTGCAAGAGAAATTTGGGCACAGTGGGGATAGCTTTTATCGTCACGTAAAGCATTTCTTCAACTCAGTTGTCCCTACGCTCTTGAAGCGGTTTTTGAAGCCTCCAAATCCTAATGAAGTTCATTGGAAAATAGAAAAAGATCCTAGATTTTATCCCTATTTCAAGAATTGCCTTGGTGCAATTGACGGCACCCATATACCCATATCTATATCATCTGACAAAGCAGCTCCATTTAGAAATAGGAAAAATACTCTTAGCTAAAATGTGATGATAGCTTGTGATTTTGATCTGAAGATCACTTTCATGTCTATTGGGTGGGAGGGGTCGGCTACAGATGCCAGGGTTCTTACCTCCGCAGTAAACAAAGGCTTCCAAGTACCCCCTGCAAAGTTCTATTTGGTTGATGGTG] consensusID : consensus_7269#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 976 fasta sequence [GTCCGCCGCCGCCCACGCCTCCGCGAGGCTCTCCGGCGACGCAACGAAGACACGGACGCGACGGGGGCGGCGGCGGCGGCGCGCGGCGCGTGGCGCGACCCGGAGGCGACGGCGACGGCGACGGCACGGCTCACTCCTCCGGCCGCCACCTTCTCTCCGATTGCACACGCACCCATTAGACTTGGAGAAGACCAACCTCCTCCTTCCTGGGACCTTGTACCCTCTCCTTCCTGGGACCTTGTACCCTCTCCAAGAGTTAATATGCTTGGAAGAGGTTCTCCAAGGTTGACCATGCTTTTAGCGAAAGCTGCACAAAAGAAGAACTCTCTGAAAGGTCGTCCTACAAAAAAGCATGGAGGTTCTCCAATAGAAAAAAACAAGAGCCTCTTGGAACCCAGCCCTAGAGAAGATTCTTGTTGAGTTATTGCATGAGCACAACACTCCTGAGTATAGGGGTCAGAATGGATGGACTTCAGAAGCTTGGAACAAAATCGTGAAGGAATTCCATGAGAAGGACATATATGTCTGCTTAACAAAGTCCCAAATCTAAGAAAAGGAGAAAGAGCTAAAAAGAGAATATAGGATGCTGAAAGAGGCTAGAAAACAAAGTGGAGCTTCATGGAATAACCAGAGATGCATCATTGAGGCTGAGCCTGCTATATGGAACAATATAATCATCTCATTTCCTAAAGCCAAGAAGTTTCGCACCAAATCTTTCCCTCTATTTGAGGCCTTGGAGAACTTTACGATGGACATACTGCAGAAGGAACCTACAATTTCACCTCAACTGAGCCATTGCAACATCCAATCATTACTCAAATTGAGAGTGATCAAGATGATCTCGGTAACACTGAGATTATCTTTCCAGATTATGAGGACACTTTGGCTTATCAAGTACAAGATGATGCAGATGCAACTGAAGATGATAATGCAAATGCTGAAAGGCTTAAAGAGATGCCGCAAAGAAGGGTTGTTG] [+] EMBL AK109212 [GTCCGCCGCCGCCCACGCCTCCGCGAGGCTCTCCGGCGACGCAACGAAGACACGGACGCGACGGGGGCGGCGGCGGCGGCGCGCGGCGCGTGGCGCGACCCGGAGGCGACGGCGACGGCGACGGCACGGCTCACTCCTCCGGCCGCCACCTTCTCTCCGATTGCACACGCACCCATTAGACTTGGAGAAGACCAACCTCCTCCTTCCTGGGACCTTGTACCCTCTCCTTCCTGGGACCTTGTACCCTCTCCAAGAGTTAATATGCTTGGAAGAGGTTCTCCAAGGTTGACCATGCTTTTAGCGAAAGCTGCACAAAAGAAGAACTCTCTGAAAGGTCGTCCTACAAAAAAGCATGGAGGTTCTCCAATAGAAAAAAACAAGAGCCTCTTGGAACCCAGCCCTAGAGAAGATTCTTGTTGAGTTATTGCATGAGCACAACACTCCTGAGTATAGGGGTCAGAATGGATGGACTTCAGAAGCTTGGAACAAAATCGTGAAGGAATTCCATGAGAAGGACATATATGTCTGCTTAACAAAGTCCCAAATCTAAGAAAAGGAGAAAGAGCTAAAAAGAGAATATAGGATGCTGAAAGAGGCTAGAAAACAAAGTGGAGCTTCATGGAATAACCAGAGATGCATCATTGAGGCTGAGCCTGCTATATGGAACAATATAATCATCTCATTTCCTAAAGCCAAGAAGTTTCGCACCAAATCTTTCCCTCTATTTGAGGCCTTGGAGAACTTTACGATGGACATACTGCAGAAGGAACCTACAATTTCACCTCAACTGAGCCATTGCAACATCCAATCATTACTCAAATTGAGAGTGATCAAGATGATCTCGGTAACACTGAGATTATCTTTCCAGATTATGAGGACACTTTGGCTTATCAAGTACAAGATGATGCAGATGCAACTGAAGATGATAATGCAAATGCTGAAAGGCTTAAAGAGATGCCGCAAAGAAGGGTTGTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7269#0 CCAGCCCGTCCGCCGCCGCCCACGCCTCCGCGAGGCTCTCCGGCGACGCAACGAAGACAC 60 consensus_7269#1 -------GTCCGCCGCCGCCCACGCCTCCGCGAGGCTCTCCGGCGACGCAACGAAGACAC 53 ***************************************************** consensus_7269#0 GGACGCGACGGGGGCGGCGGCGGCGGCGCGCGGCGCGTGGCGCGACCCGGAGGCGACGGC 120 consensus_7269#1 GGACGCGACGGGGGCGGCGGCGGCGGCGCGCGGCGCGTGGCGCGACCCGGAGGCGACGGC 113 ************************************************************ consensus_7269#0 GACGGCGACGGCACGGCTCACTCCTCCGGCCGCCACCTTCTCTCCGATTGCACACGCACC 180 consensus_7269#1 GACGGCGACGGCACGGCTCACTCCTCCGGCCGCCACCTTCTCTCCGATTGCACACGCACC 173 ************************************************************ consensus_7269#0 CATTAGACTTGGAGAAGACCAACCTCCTCCTTCCTGGGACCTTGTACCCTCTCCTTCCTG 240 consensus_7269#1 CATTAGACTTGGAGAAGACCAACCTCCTCCTTCCTGGGACCTTGTACCCTCTCCTTCCTG 233 ************************************************************ consensus_7269#0 GGACCTTGTACCCTCTCCAAGAGTACTACTATGGATATGAGAG---CAAGATACCTCGCT 297 consensus_7269#1 GGACCTTGTACCCTCTCCAAGAGT--TAATATGCTTGGAAGAGGTTCTCCAAGGTTGACC 291 ************************ ** **** * **** * * * * consensus_7269#0 AGAAAGAGGAGGGAAGAGGAGGACGATGATATGATGTTGTTTATTTTCCCTGCACTACAT 357 consensus_7269#1 ATGCTTTTAGCGAAAGCTGCACAAAAGAAGAACTCTCTGAAAGGTCGTCCTACAAAAAAG 351 * * *** * * * * * ** * *** ** * * consensus_7269#0 TTGTTGAGTTCTAGTGGAGCAAGGGAAAAGAAGCGACACCATACATCAAAGCTAACAGGT 417 consensus_7269#1 CATGGAGGTTCTCC---AATAGAAAAAAACAAGAGCCTCTTGGAACCCAGCCCTAGAGAA 408 ***** * * **** *** * * * * * * * * ** consensus_7269#0 GATGAGCGTGTTCGGGAGTTGCTTGAAGGGCATGTAAAAAATTGCCGGGTAGCATTCAGG 477 consensus_7269#1 GATT--CTTGTTGAGTTATTGCATGA-------GCACAACACTCCTGAGT---ATAGGGG 456 *** * **** * **** *** * * ** * * * * ** ** ** consensus_7269#0 ATGGAGCCGGAAATATTTATATCTTTGGCCAATTACCTTAGAACTGAAAAGTTGGTCGAT 537 consensus_7269#1 TCAGAATGGATGGACTTCAGAAGCTTGGAACAAAATCGTGAAG----GAATTCCATGAGA 512 ** * ** * * **** * * * * * ** * * consensus_7269#0 GATACTAGGATTAAAGTTGAAGAGAAGCTGGCATTCTTCTTATACATGCTTAGTCACAAT 597 consensus_7269#1 AGGACATATATGTCTGCTTAACAAAGTCCCAAATCTAAGAAAAGGAGAAAGAGCTAAAAA 572 ** ** * * ** * * * ** * * ** * ** consensus_7269#0 GCTTCATTTGAGGATTTGCAAGAGAAATTTGGGCACAGTGGGGATAGCTTTTATCGTCAC 657 consensus_7269#1 GAGA-ATATAGGATGCTGAAAGAGGCTAGAAAACAAAGTGGAGCTTCATGGAATAACCA- 630 * ** * * ** ***** ** ***** * * * ** ** consensus_7269#0 GTAAAGCATTTCTTCAACTCAGTTGTCCCTACGCTCTTGAAGCGGTTTTTGAAGCCTCCA 717 consensus_7269#1 GAGATGCATCATTGAGGCTGAGCCTGCTATATGGAAC-AATATAATCATCTCATTTCCTA 689 * * **** * ** ** * ** * * * * * * * consensus_7269#0 AATCCTAATGAAGTTCATTGGAAAATAGAAAAAGATCCTAGATTTTATCCCTATTTCAAG 777 consensus_7269#1 AAGCC--AAGAAGTTTCGCACCAAATCTTTCCCTCTATTTGAGGCCTTGGAGAACTTTAC 747 ** ** * ****** **** * * ** * * * * consensus_7269#0 AATTGCCTTGGTGCAATTGACGGCACCCATATACCCATATCTATATCATC-TGACA---A 833 consensus_7269#1 GATGGACATACTGCAGAAGGAACCTACAATTTCACCTCAACTGAGCCATTGCAACATCCA 807 ** * * * **** * * * ** * ** * ** *** *** * consensus_7269#0 AGCA--GCTCCATTTAGAAATAGGAAAAATACTCTTAGCTAAAATGTGATGATAGCTTGT 891 consensus_7269#1 ATCATTACTCAAATTGAGAGTGATCAAGATGATCTCGGTAACACTGAGATTATCTTTCCA 867 * ** *** * ** * * ** ** *** * * * ** *** ** * consensus_7269#0 GATTTTGATCTGAAGATCACTTTCATGTCTATTGGGTGGGAGGGGTCGGCTACAGATGCC 951 consensus_7269#1 GATTATGA------GGACACTTTG--GCTTATCAAGTACAAGATGA----TGCAGATGCA 915 **** *** * ****** * *** ** ** * * ******* consensus_7269#0 AGGGTTCTTACCTCTGCAG-TAAACAAAGGCTTCCAAGTACCCCCTGGAAAGTTCTATTT 1010 consensus_7269#1 ACTGAAGATGATAATGCAAATGCTGAAAGGCTTAAAGAGATGCCGCAAAGAAGGGTTGTT 975 * * * **** * ******** * * ** * * * ** consensus_7269#0 GGTTGATGGTG 1021 consensus_7269#1 G---------- 976 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||