These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7272#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1766 fasta sequence [CAACTGGTTTCTTTTATTTACTTTTTTTTCCAAGGAAAGAAGTAGCTGGATGATAGAAGTGGTCATATCAACTGTGTATTTGTAAGCATGTTTTTTGTTTGAAATTTGATCCAGGATTATCCTTGGAGATCACTGGAGCAAAGGGTGAGAAGAGAACCTTTTGTGTTTTCCTCCAGAATCCGCCATATCAACGGTGGCGGTAACCCGAGGCCGAGACAAGAGGACCCCGGACTCACCGATGCCGAGTTCAAGAAGGCGATGGAGCAGCTCAACAAGCAGGCATATAGGTCCTTAGACCCTCATAAGATGGTTGAATCAAACAGAGGAGGCAGAAACCATGCAAAGAGTGCAAGATCCAAGCCAGCTCCAAACAACACGGAAGAGGAGAAAGCATGTACCATATGTTTGGAGACATTCCTGGCTGGGGAGCAGGTGGTGGCCACACCCTGCAACCACATATTTCACCAAGAGTGTATCACCCCCTGGGTGAAGGGGCATGGCAACTGCCCGGTGTGCCGGTTCGCGCTATGCGAGAGGAACACCGTCTCCGACAACAGCCAGAGTGGCGTTGGAGAGGTTGAGGTAGATCTGGACCTGCTGGAGATGATGAGGGCCATGGAGGAGATCTTCAGCCGGGTCACATTCTCAAACTTCATGCCATACAACTAGATGAATCAGCATCAGGTCATGAAGACATGAACTGATGAACAAATGGTATTCCAGTCTTAATATCATGGTGTGCTACTCACTTGCATGATATTCCACTACGAATTTCATCAAGATTTTCTACCTGGCAATCTTGTCAAACTGCTTTGTGAAACCAGGTAATGCATTGCAACAGTACAAACAACAGGATGGATGAACAACTGCATATGCATTAGAGGTAAGGCAGCAAAACTAATTGTGCGAGATGTGCCATATATTTCTTCTGAAACACATACTGTAATCTTACTCCAACTTGTATCATGATAATGAAATATCTAAGAACCATTCTAAGATTTTTAACTCATATAAAAGATTTCTAAGCAGACCATGTTTAAGGTAGCACCAGCAGCAGGGGATATTGTAAAGACTTTATCTAAGGTGGAGGACAACGGCCAAGATGGAAGAGAACTGTGTCCTAACAAGAAGAGACAAAATGTAAGCTGACAGTTACCCAGAACATGCTTAAAATCTTTTATCAAGCATGCTTCAACTACCAGGACACTCAAGGGGTTGTTCTCATTTACAGTTGTTTACATCAGTAGGTCTGCTCTTCAGCTGTCTTGAATCAGGTTGGTTGGTTCACTCAAGACATACTTGGGCAGTTCATACTTCGCACCTCTTTCATCATAGCAGAGAGTCAGATCAGTATTAGAAACAATTATGGCTGCACTTTCCACAATTGCCTGTGCAAGGGACACTTCAGACTCTGCCGCAACACGCAGGGCATCCCAGATTTCTTTCCGACCACCATAGTGAGGAGCTGTGTCCCAAAACTCCTCGCGCATCTTCGTGAGCTGGACCATCGTTATCGGTTGGGGGTGCTTCCAGGGCTTAGGCTTCCTGATTTTTTTAGTAGCATCGGATTCGGTGGCGCCCATGGGGGTGGATCCTGCGCAGCCCATGGGAATCTGGCGGTGGCGAAGCCGAGAAAAGAAGGGATTTTTGGGGGGAGGCGGCTTCAGCTCCTCCGGCCGAGGCCTCCCTTGGCTTCCGGTGAAAGGAAGGAACTCGACTTCCCTTGCCTACATTGTTCCATTGGCCAGAGGCTGTTCACCTTGGAG] [+] EMBL AK059922 [CAACTGGTTTCTTTTATTTACTTTTTTTTCCAAGGAAAGAAGTAGCTGGATGATAGAAGTGGTCATATCAACTGTGTATTTGTAAGCATGTTTTTTGTTTGAAATTTGATCCAGGATTATCCTTGGAGATCACTGGAGCAAAGGGTGAGAAGAGAACCTTTTGTGTTTTCCTCCAGAATCCGCCATATCAACGGTGGCGGTAACCCGAGGCCGAGACAAGAGGACCCCGGACTCACCGATGCCGAGTTCAAGAAGGCGATGGAGCAGCTCAACAAGCAGGCATATAGGTCCTTAGACCCTCATAAGATGGTTGAATCAAACAGAGGAGGCAGAAACCATGCAAAGAGTGCAAGATCCAAGCCAGCTCCAAACAACACGGAAGAGGAGAAAGCATGTACCATATGTTTGGAGACATTCCTGGCTGGGGAGCAGGTGGTGGCCACACCCTGCAACCACATATTTCACCAAGAGTGTATCACCCCCTGGGTGAAGGGGCATGGCAACTGCCCGGTGTGCCGGTTCGCGCTATGCGAGAGGAACACCGTCTCCGACAACAGCCAGAGTGGCGTTGGAGAGGTTGAGGTAGATCTGGACCTGCTGGAGATGATGAGGGCCATGGAGGAGATCTTCAGCCGGGTCACATTCTCAAACTTCATGCCATACAACTAGATGAATCAGCATCAGGTCATGAAGACATGAACTGATGAACAAATGGTATTCCAGTCTTAATATCATGGTGTGCTACTCACTTGCATGATATTCCACTACGAATTTCATCAAGATTTTCTACCTGGCAATCTTGTCAAACTGCTTTGTGAAACCAGGTAATGCATTGCAACAGTACAAACAACAGGATGGATGAACAACTGCATATGCATTAGAGGTAAGGCAGCAAAACTAATTGTGCGAGATGTGCCATATATTTCTTCTGAAACACATACTGTAATCTTACTCCAACTTGTATCATGATAATGAAATA ] [-] EMBL AK121772 [ CTGCATATGCATTAGAGGTAAGGCAGCAAAACTAATTGTGCGAGATGTGCCATATATTTCTTCTGAAACACATACTGTAATCTTACTCCAACTTGTATCATGATAATGAAATATCTAAGAACCATTCTAAGATTTTTAACTCATATAAAAGATTTCTAAGCAGACCATGTTTAAGGTAGCACCAGCAGCAGGGGATATTGTAAAGACTTTATCTAAGGTGGAGGACAACGGCCAAGATGGAAGAGAACTGTGTCCTAACAAGAAGAGACAAAATGTAAGCTGACAGTTACCCAGAACATGCTTAAAATCTTTTATCAAGCATGCTTCAACTACCAGGACACTCAAGGGGTTGTTCTCATTTACAGTTGTTTACATCAGTAGGTCTGCTCTTCAGCTGTCTTGAATCAGGTTGGTTGGTTCACTCAAGACATACTTGGGCAGTTCATACTTCGCACCTCTTTCATCATAGCAGAGAGTCAGATCAGTATTAGAAACAATTATGGCTGCACTTTCCACAATTGCCTGTGCAAGGGACACTTCAGACTCTGCCGCAACACGCAGGGCATCCCAGATTTCTTTCCGACCACCATAGTGAGGAGCTGTGTCCCAAAACTCCTCGCGCATCTTCGTGAGCTGGACCATCGTTATCGGTTGGGGGTGCTTCCAGGGCTTAGGCTTCCTGATTTTTTTAGTAGCATCGGATTCGGTGGCGCCCATGGGGGTGGATCCTGCGCAGCCCAT ] [-] EMBL AK059121 [ TTCTAAGATTTTTAACTCATATAAAAGATTTCTAAGCAGACCATGTTTAAGGTAGCACCAGCAGCAGGGGATATTGTAAAGACTTTATCTAAGGTGGAGGACAACGGCCAAGATGGAAGAGAACTGTGTCCTAACAAGAAGAGACAAAATGTAAGCTGACAGTTACCCAGAACATGCTTAAAATCTTTTATCAAGCATGCTTCAACTACCAGGACACTCAAGGGGTTGTTCTCATTTACAGTTGTTTACATCAGTAGGTCTGCTCTTCAGCTGTCTTGAATCAGGTTGGTTGGTTCACTCAAGACATACTTGGGCAGTTCATACTTCGCACCTCTTTCATCATAGCAGAGAGTCAGATCAGTATTAGAAACAATTATGGCTGCACTTTCCACAATTGCCTGTGCAAGGGACACTTCAGACTCTGCCGCAACACGCAGGGCACCCCAGATTTCTTTCCGACCACCATAGTGAGGAGCTGTGTCCCAAAACTCCTCGCGCATCTTCGTGAGCTGGACCATCGTTATCGGTTGGGGGTGCTTCCAGGGCTTAGGCTTCCTGATTTTTTTAGTAGCATCGGATTCGGGGGCGCCCATGGGGGTGGATCCTGCGCAGCCCATGGGAATCTGGCGGTGGCGAAGCCGAGAAAAGAAGGGATTTTTGGGGGGAGGCGGCTTCAGCTCCTCCGGCCGAGGCCTCCCTTGGCTTCCGGTGAAAGGAAGGAACTCGACTTCCCTTGCCTACATTGTTCCATTGGCCAGAGGCTGTTCACCTTGGAG] consensusID : consensus_7272#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 916 fasta sequence [TCACACACCTGCAAAAATCCATTCTCTTCCGGCGAGCAGCCGGCAACTCCGGTCGCCGGCGAGATGAGCGGCCGCCGGCCGGACGGGAGCTATGGGCCGGAGTACGGCCCCCAGCCTCCTGAGCATGAGTATGGCTTGTACCATCACTGGCCATCCAGAGGGAGGGCACCTTGGCCTCTCTACCATGGCAGGGATTATCCTTGGAGATCACTGGAGCAAAGGGTGAGAAGAGAACCTTTTGTGTTTTCCTCCAGAATCCGCCATATCAACGGTGGCGGTAACCCGAGGCCGAGACAAGAGGACCCCGGACTCACCGATGCCGAGTTCAAGAAGGCGATGGAGCAGCTCAACAAGCAGGCATATAGGTCCTTAGACCCTCATAAGATGGTTGAATCAAACAGAGGAGGCAGAAACCATGCAAAGAGTGCAAGATCCAAGCCAGCTCCAAACAACACGGAAGAGGAGAAAGCATGTACCATATGTTTGGAGACATTCCTGGCTGGGGAGCAGGTGGTGGCCACACCCTGCAACCACATATTTCACCAAGAGTGTATCACCCCCTGGGTGAAGGGGCATGGCAACTGCCCGGTGTGCCGGTTCGCGCTATGCGAGAGGAACACCGTCTCCGACAACAGCCAGAGTGGCGTTGGAGAGGTTGAGGTAGATCTGGACCTGCTGGAGATGATGAGGGCCATGGAGGAGATCTTCAGCCGGGTCACATTCTCAAACTTCATGCCATACAACTAGATGAATCAGCATCAGGTCATGAAGACATGAACTGATGAACAAATGGTATTCCAGTCTTAATATCATGGTGTGCTACTCACTTGCATGATATTCCACTACGAATTTCATCAAGATTTTCTACCTGGCAATCTTGTCAAACTGCTTTGTGAAACCAGGTAATGCATTGCAA] [+] EMBL AK060053 [TCACACACCTGCAAAAATCCATTCTCTTCCGGCGAGCAGCCGGCAACTCCGGTCGCCGGCGAGATGAGCGGCCGCCGGCCGGACGGGAGCTATGGGCCGGAGTACGGCCCCCAGCCTCCTGAGCATGAGTATGGCTTGTACCATCACTGGCCATCCAGAGGGAGGGCACCTTGGCCTCTCTACCATGGCAGGGATTATCCTTGGAGATCACTGGAGCAAAGGGTGAGAAGAGAACCTTTTGTGTTTTCCTCCAGAATCCGCCATATCAACGGTGGCGGTAACCCGAGGCCGAGACAAGAGGACCCCGGACTCACCGATGCCGAGTTCAAGAAGGCGATGGAGCAGCTCAACAAGCAGGCATATAGGTCCTTAGACCCTCATAAGATGGTTGAATCAAACAGAGGAGGCAGAAACCATGCAAAGAGTGCAAGATCCAAGCCAGCTCCAAACAACACGGAAGAGGAGAAAGCATGTACCATATGTTTGGAGACATTCCTGGCTGGGGAGCAGGTGGTGGCCACACCCTGCAACCACATATTTCACCAAGAGTGTATCACCCCCTGGGTGAAGGGGCATGGCAACTGCCCGGTGTGCCGGTTCGCGCTATGCGAGAGGAACACCGTCTCCGACAACAGCCAGAGTGGCGTTGGAGAGGTTGAGGTAGATCTGGACCTGCTGGAGATGATGAGGGCCATGGAGGAGATCTTCAGCCGGGTCACATTCTCAAACTTCATGCCATACAACTAGATGAATCAGCATCAGGTCATGAAGACATGAACTGATGAACAAATGGTATTCCAGTCTTAATATCATGGTGTGCTACTCACTTGCATGATATTCCACTACGAATTTCATCAAGATTTTCTACCTGGCAATCTTGTCAAACTGCTTTGTGAAACCAGGTAATGCATTGCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7272#0 ------------------------------------------------------------ consensus_7272#1 TCACACACCTGCAAAAATCCATTCTCTTCCGGCGAGCAGCCGGCAACTCCGGTCGCCGGC 60 consensus_7272#0 --------CAACTGGTTTCTTTTATTTACTTTTTTTTCCAAGGAAAGA----AGTAGCTG 48 consensus_7272#1 GAGATGAGCGGCCGCCGGCCGGACGGGAGCTATGGGCCGGAGTACGGCCCCCAGCCTCCT 120 * * * * * * * * ** * * ** * consensus_7272#0 GATGATAGAAGTGG-TCATATCA--ACTGTGTATTTGTAAGCATG---TTTTTTGTTTGA 102 consensus_7272#1 GAGCATGAGTATGGCTTGTACCATCACTGGCCATCCAGAGGGAGGGCACCTTGGCCTCTC 180 ** ** *** * ** ** **** ** * * * * ** * consensus_7272#0 AATTTGATCCAGGATTATCCTTGGAGATCACTGGAGCAAAGGGTGAGAAGAGAACCTTTT 162 consensus_7272#1 TACCATGGCAGGGATTATCCTTGGAGATCACTGGAGCAAAGGGTGAGAAGAGAACCTTTT 240 * * ************************************************* consensus_7272#0 GTGTTTTCCTCCAGAATCCGCCATATCAACGGTGGCGGTAACCCGAGGCCGAGACAAGAG 222 consensus_7272#1 GTGTTTTCCTCCAGAATCCGCCATATCAACGGTGGCGGTAACCCGAGGCCGAGACAAGAG 300 ************************************************************ consensus_7272#0 GACCCCGGACTCACCGATGCCGAGTTCAAGAAGGCGATGGAGCAGCTCAACAAGCAGGCA 282 consensus_7272#1 GACCCCGGACTCACCGATGCCGAGTTCAAGAAGGCGATGGAGCAGCTCAACAAGCAGGCA 360 ************************************************************ consensus_7272#0 TATAGGTCCTTAGACCCTCATAAGATGGTTGAATCAAACAGAGGAGGCAGAAACCATGCA 342 consensus_7272#1 TATAGGTCCTTAGACCCTCATAAGATGGTTGAATCAAACAGAGGAGGCAGAAACCATGCA 420 ************************************************************ consensus_7272#0 AAGAGTGCAAGATCCAAGCCAGCTCCAAACAACACGGAAGAGGAGAAAGCATGTACCATA 402 consensus_7272#1 AAGAGTGCAAGATCCAAGCCAGCTCCAAACAACACGGAAGAGGAGAAAGCATGTACCATA 480 ************************************************************ consensus_7272#0 TGTTTGGAGACATTCCTGGCTGGGGAGCAGGTGGTGGCCACACCCTGCAACCACATATTT 462 consensus_7272#1 TGTTTGGAGACATTCCTGGCTGGGGAGCAGGTGGTGGCCACACCCTGCAACCACATATTT 540 ************************************************************ consensus_7272#0 CACCAAGAGTGTATCACCCCCTGGGTGAAGGGGCATGGCAACTGCCCGGTGTGCCGGTTC 522 consensus_7272#1 CACCAAGAGTGTATCACCCCCTGGGTGAAGGGGCATGGCAACTGCCCGGTGTGCCGGTTC 600 ************************************************************ consensus_7272#0 GCGCTATGCGAGAGGAACACCGTCTCCGACAACAGCCAGAGTGGCGTTGGAGAGGTTGAG 582 consensus_7272#1 GCGCTATGCGAGAGGAACACCGTCTCCGACAACAGCCAGAGTGGCGTTGGAGAGGTTGAG 660 ************************************************************ consensus_7272#0 GTAGATCTGGACCTGCTGGAGATGATGAGGGCCATGGAGGAGATCTTCAGCCGGGTCACA 642 consensus_7272#1 GTAGATCTGGACCTGCTGGAGATGATGAGGGCCATGGAGGAGATCTTCAGCCGGGTCACA 720 ************************************************************ consensus_7272#0 TTCTCAAACTTCATGCCATACAACTAGATGAATCAGCATCAGGTCATGAAGACATGAACT 702 consensus_7272#1 TTCTCAAACTTCATGCCATACAACTAGATGAATCAGCATCAGGTCATGAAGACATGAACT 780 ************************************************************ consensus_7272#0 GATGAACAAATGGTATTCCAGTCTTAATATCATGGTGTGCTACTCACTTGCATGATATTC 762 consensus_7272#1 GATGAACAAATGGTATTCCAGTCTTAATATCATGGTGTGCTACTCACTTGCATGATATTC 840 ************************************************************ consensus_7272#0 CACTACGAATTTCATCAAGATTTTCTACCTGGCAATCTTGTCAAACTGCTTTGTGAAACC 822 consensus_7272#1 CACTACGAATTTCATCAAGATTTTCTACCTGGCAATCTTGTCAAACTGCTTTGTGAAACC 900 ************************************************************ consensus_7272#0 AGGTAATGCATTGCAACAGTACAAACAACAGGATGGATGAACAACTGCATATGCATTAGA 882 consensus_7272#1 AGGTAATGCATTGCAA-------------------------------------------- 916 **************** consensus_7272#0 GGTAAGGCAGCAAAACTAATTGTGCGAGATGTGCCATATATTTCTTCTGAAACACATACT 942 consensus_7272#1 ------------------------------------------------------------ consensus_7272#0 GTAATCTTACTCCAACTTGTATCATGATAATGAAATATCTAAGAACCATTCTAAGATTTT 1002 consensus_7272#1 ------------------------------------------------------------ consensus_7272#0 TAACTCATATAAAAGATTTCTAAGCAGACCATGTTTAAGGTAGCACCAGCAGCAGGGGAT 1062 consensus_7272#1 ------------------------------------------------------------ consensus_7272#0 ATTGTAAAGACTTTATCTAAGGTGGAGGACAACGGCCAAGATGGAAGAGAACTGTGTCCT 1122 consensus_7272#1 ------------------------------------------------------------ consensus_7272#0 AACAAGAAGAGACAAAATGTAAGCTGACAGTTACCCAGAACATGCTTAAAATCTTTTATC 1182 consensus_7272#1 ------------------------------------------------------------ consensus_7272#0 AAGCATGCTTCAACTACCAGGACACTCAAGGGGTTGTTCTCATTTACAGTTGTTTACATC 1242 consensus_7272#1 ------------------------------------------------------------ consensus_7272#0 AGTAGGTCTGCTCTTCAGCTGTCTTGAATCAGGTTGGTTGGTTCACTCAAGACATACTTG 1302 consensus_7272#1 ------------------------------------------------------------ consensus_7272#0 GGCAGTTCATACTTCGCACCTCTTTCATCATAGCAGAGAGTCAGATCAGTATTAGAAACA 1362 consensus_7272#1 ------------------------------------------------------------ consensus_7272#0 ATTATGGCTGCACTTTCCACAATTGCCTGTGCAAGGGACACTTCAGACTCTGCCGCAACA 1422 consensus_7272#1 ------------------------------------------------------------ consensus_7272#0 CGCAGGGCATCCCAGATTTCTTTCCGACCACCATAGTGAGGAGCTGTGTCCCAAAACTCC 1482 consensus_7272#1 ------------------------------------------------------------ consensus_7272#0 TCGCGCATCTTCGTGAGCTGGACCATCGTTATCGGTTGGGGGTGCTTCCAGGGCTTAGGC 1542 consensus_7272#1 ------------------------------------------------------------ consensus_7272#0 TTCCTGATTTTTTTAGTAGCATCGGATTCGGTGGCGCCCATGGGGGTGGATCCTGCGCAG 1602 consensus_7272#1 ------------------------------------------------------------ consensus_7272#0 CCCATGGGAATCTGGCGGTGGCGAAGCCGAGAAAAGAAGGGATTTTTGGGGGGAGGCGGC 1662 consensus_7272#1 ------------------------------------------------------------ consensus_7272#0 TTCAGCTCCTCCGGCCGAGGCCTCCCTTGGCTTCCGGTGAAAGGAAGGAACTCGACTTCC 1722 consensus_7272#1 ------------------------------------------------------------ consensus_7272#0 CTTGCCTACATTGTTCCATTGGCCAGAGGCTGTTCACCTTGGAG 1766 consensus_7272#1 -------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||