These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7301#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 660 fasta sequence [TCAATTACAGTACTGCGCTCTCTGTCACTCCATTGCCCAGGGGATTTGGCAAATTCTCTGATGTCATGTCTGATCCTGATTTCGACCTGCTCTACTGCACGCACATTGATGGCAAGCTGAGTATCTGGAAGCGCAAGGAGGGTGAACATGTGCATTTGTTGTGTGCGGTGGAAGATCTCATGCCTTCAATTGGTACAATTGTTCCACCTCCAGCTGTTCTTGCTACTACAATCTGGCAGTCAGAGGCTGTTTTCCGTAACATAGAGAAGCAATCACGGGACTTGGGACAAATACAATCTACACATTCTGTCATCTCTGATACAAATACAAACCAAAATATGTATCAAGGGACCATGACATATCTAACCTCGATCTCTGAAGATGGCAAGATCTGGTCATGGCATTTAAGTTTTGACAAGTCTGCATGTGCTAGAAAAGATAAACTAGGTACATCGAATCATAGTGATGCTGGAATTTCCAATTCGCGCTCCAATGGACTTGATTTTACCGTAAAGATTAATTTGATGGGCCAGCTTCATCTTTTGTCCTCCACTGTGACTACGCTAGCTGTGCCATCCCCTTCTTTACTTGCCACAGTAGCCCGTGGTGGAAACAATCCTGCTCCAGCAGTACCACTTGTTGCTGTAGGAACTCAGAATG] [+] EMBL CF304206 [TCAATTACAGTACTGCGCTCTCTGTCACTCCATTGCCCAGGGGATTTGGCAAATTCTCTGATGTCATGTCTGATCCTGATTTCGACCTGCTCTACTGCACGCACATTGATGGCAAGCTGAGTATCTGGAAGCGCAAGGAGGGTGAACATGTGCATTTGTTGTGTGCGGTGGAAGATCTCATGCCTTCAATTGGTACAATTGTTCCACCTCCAGCTGTTCTTGCTACTACAATCTGGCAGTCAGAGGCTGTTTTCCGTAACATAGAGAAGCAATCACGGGACTTGGGACAAATACAATCTACACATTCTGTCATCTCTGATACAAATACAAACCAAAATATGTATCAAGGGACCATGACATATCTAACCTCGATCTCTGAAGATGGCAAGATCTGGTCATGGCATTTAAGTTTTGACAAGTCTGCATGTGCTAGAAAAGATAAACTAGGTACATCGAATCATAGTGATGCTGGAATTT CAATTC CGCTCCAATGGACTTGA TTTACCG AAAGA TAATTTGATGGGCCAGCTTCATCTTTTGTCCTCCACTGTGACTACGCTAGCTGTGCCATCCCCTTCTTTACTTGCCACAGTAGCCCGTGGTGGAAACAATCCTGCTCCAGCAGTACCACTTGTTGCTGTAGGAACTCAGAATG] [+] EMBL CF303519 [TCAATTACAGTACTGCGCTCTCTGTCACTCCATTGCCCAGGGGATTTGGCAAATTCTCTGATGTCATGTCTGATCCTGATTTCGACCTGCTCTACTGCACGCACATTGATGGCAAGCTGAGTATCTGGAAGCGCAATGTGGGTGAACATGTGCATTTGTTGTGTGCGGTGGAAGATCTCATGCCTTCAATTGGTACAATTGTTCCACCTCCAGCTGTTCTTGCTACTACAATCTGGCAGTCAGAGGCTGTTTTCCGTAACATAGAGAAGCAATCACGGGACTTGGGACAAATACAATCTACACAAGCTGTCATCTCTGATACAAATACAAACCAAAATATGTATCAAGGGACCATGACATATCTAACCTCGATCTCTGAAGATGGCAAGATCTGGTCATGGCATTTAAGTTTTGACAAGTCTGCATGTGCTAGAAAAGATAAACTAGGTACATCGAATCATAGTGATGCTGGAATTTCCAATTCGCGCTCCAATGGACTTGATTTTACCGTAAAGATTAATTTGATGGGCCAGCTTCATCTTTTGTCCTCCACTGTGACTACGCTAGCTGTGCCATCCCCTTCTTTACTT ] [+] EMBL CF304392 [TCAATTACAGTACTGCGCTCTCTGTCACTCCATTGCCCAGGGGATTTGGCAAATTCTCTGATGTCATGTCTGATCCTGATTTCGACCTGCTCTACTGCACGCACATTGATGGCAAGCTGAGTATCTGGAAGCGCAAGGAGGGTGAACATGTGCATTTGTTGTGTGCGGTGGAAGATCTCATGCCTTCAATTGGTACAATTGTTCCACCTCCAGCTGTTCTTGCTACTACAATCTGGCAGTCAGAGGCTGTTTTCCGTAACATAGAGAAGCAATCACGGGACTTGGGACAAATACAATCTACACATTCTGTCATCTCTGATACAAATACAAACCAAAATATGTATCAAGGGACCATGACATATCTAACCTCGATCTCTGAAGATGGCAAGATCTGGTCATGGCATTTAAGTTTTGACAAGTCTGCATGTGCTAGAAAAGATAAACTAGGTACATCGAATCATAGTGATGCTGGAATTTCCAATTCGCGCTCCAATGGACTTGATTTTACCGTAAAGATTAATTTGATGGGCCAGCTTCATCTTTTGTCCTCCACTGTGACTACGCTAGCTGTGCCATCCCCTTCTTTAC ] consensusID : consensus_7301#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 557 fasta sequence [TGATCAAGTTTCTAGAAAAATTTAGCAATATCTAAAATATCAAATTAGTTTCATTAAATCTAACATTGAATATATTTTGATAATATGTTTGTTTTGTTTTGAAAATATTACTGTATTATATTGTTCTATAAACTTGGTCAAACTTAAATAAGTTTGACTAGGAAAAAAGTCAAACGGCTTATAATATTAAATAGAGGGAGTACATGTTTAGTCATCAATCAATATCCCCTATTCCTGGCGCTTATGTACTTCCCTTATGTGGTTTGCTCATTTGTGCTATGCTCTGCAGATTAATTTGATGGGCCAGCTTCATCTTTTGTCCTCCACTGTGACTACGCTAGCTGTGCCATCCCCTTCTTTACTTGCCACAGTAGCCCGTGGTGGAAACAATCCTGCTCCAGCAGTACCACTTGTTGCTGTAGGAACTCAGAATGGGACTATTGAAATTGTTGATGTTTTAGCTAATGCAATATCTGTTAGCNNTGCTGTCCATAGCAGCACTGTCAGNNNANNAAGNTNGCTTNNNNNNNNNNGGCTTNNNNNNNNCTCATATAGTC] [+] EMBL CF196900 [TGATCAAGTTTCTAGAAAAATTTAGCAATATCTAAAATATCAAATTAGTTTCATTAAATCTAACATTGAATATATTTTGATAATATGTTTGTTTTGTTTTGAAAATATTACTGTATTATATTGTTCTATAAACTTGGTCAAACTTAAATAAGTTTGACTAGGAAAAAAGTCAAACGGCTTATAATATTAAATAGAGGGAGTACATGTTTAGTCATCAATCAATATCCCCTATTCCTGGCGCTTATGTACTTCCCTTATGTGGTTTGCTCATTTGTGCTATGCTCTGCAGATTAATTTGATGGGCCAGCTTCATCTTTTGTCCTCCACTGTGACTACGCTAGCTGTGCCATCCCCTTCTTTACTTGCCACAGTAGCCCGTGGTGGAAACAATCCTGCTCCAGCAGTACCACTTGTTGCTGTAGGAACTCAGAATGGGACTATTGAAATTGTTGATGTTTTAGCTAATGCAATATCTGTTAGCNNTGCTGTCCATAGCAGCACTGTCAGNNNANNAAGNTNGCTTNNNNNNNNNNGGCTTNNNNNNNNCTCATATAGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7301#0 TCAATTACAGTACTGCGCTCTCTGTCACTCCATTGCCCAGGGGATTTGGCAAATTCTCTG 60 consensus_7301#1 ------------------------TGATCAAGTTTCTAGAAAAATTTAGCAATATCTAAA 36 * * ** * **** **** *** consensus_7301#0 ATGTCATGTCTGATCCTGATTTCGACCTGCTCTACTGCACGCACATTGATGGCAAGCTGA 120 consensus_7301#1 ATATCAAATTAGTTTC---ATTAAATCTAA--CATTGAATATATTTTGATAATATGTT-- 89 ** *** * * * * ** * ** * ** * * ***** * * * consensus_7301#0 GTATCTGGAAGCGCAAGGAGGGTGAACATGTGCATTTGTTGTGTGCGGTGG---AAGATC 177 consensus_7301#1 -TGTTTTGTTTTGAAAATA---TTACTGTATTATATTGTTCTATAAACTTGGTCAAACTT 145 * * * * * ** * * * * * ***** * * * * ** * consensus_7301#0 TCATGCCTTCAATTGGTACAATTGTTCCACCTCCAGCTGTTCTTGCTACTACAATCTGGC 237 consensus_7301#1 AAATAAGTTTGACTAGGAAAA-------AAGTCAAACGGCTTATAATATTAAA------T 192 ** ** * * * * ** * ** * * * * * ** ** * consensus_7301#0 AGTCAGAGGCTGTTTTCCGTAACATAGAGAAGCAATCACGGGACTTGGGACAAATACAAT 297 consensus_7301#1 AGAGGGAGTACATGTTTAGT--CATCAATCAATATCCCCTATTCCTGGCGCTTATGTACT 250 ** *** * ** ** *** * * * * * * *** * ** * * consensus_7301#0 CTACACATTCTGTCATCTCTGATACAA-ATACAAACCAAAATATGTATCAAGGGACCATG 356 consensus_7301#1 TCCCTTATGTGGTTTGCTCATTTGTGCTATGCTCTGCAGATTA-ATTTGATGGGCCAGCT 309 * ** ** *** * ** * ** * ** * * * *** * consensus_7301#0 ACATATCTAACCTCGATCTCTGAAGATGGCAAGATCTGGTCATGGCATTTAAGTTTTGAC 416 consensus_7301#1 TCATCTTTTGTCCTCCACTGTGACTACG-CTAGCTGTG-CCATCCCCTTCTTTACTTGCC 367 *** * * * ** *** * * * ** * ** *** * ** *** * consensus_7301#0 AAGTCTGCATGTGCTAGAAAAGATAAACTAGGTACATCGAATCATAGTGATGCTGGAATT 476 consensus_7301#1 ACAGTAGCCCGTGGTGGAAACAATCCTGCTCCAGCAGTACCACTTGTTGCTGTAGGAACT 427 * ** *** * **** ** ** * * ** ** **** * consensus_7301#0 TCCAATTCGCGCTCCAATGGACTTGATTTTACCGTAAAGATTA-ATTTGATGGGCCAGCT 535 consensus_7301#1 CAGAATGGGACTATTGAAATTGTTGATGTTTTAGCTAATGCAATATCTGTTAGCNNTGCT 487 *** * * ***** ** * ** * ** ** * * *** consensus_7301#0 TCATCTTTTGTCCTCCACTGTGACTACGCTAGCTGTGCCATCCCCTTCTTTACTTGCCAC 595 consensus_7301#1 --GTCCATAG--CAGCACTGTCAGNNNANNAAGNTNGCTTNNNNNNNNNNGGCTTNNNNN 543 ** * * * ****** * * ** *** consensus_7301#0 AGTAGCCCGTGGTGGAAACAATCCTGCTCCAGCAGTACCACTTGTTGCTGTAGGAACTCA 655 consensus_7301#1 NNNCTCATATAGTC---------------------------------------------- 557 * * ** consensus_7301#0 GAATG 660 consensus_7301#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||