These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7311#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 546 fasta sequence [CGCTGGCCGGCGAGGGCCAGAACCTCGTCGTCACCCAGGGCGCGTCCGGCTCCGGCTCCGGCCCCAGAGACGTGCGCATCAACTACATCCCCATCAAGGACCCCGACGTGGTGATCAACTCGCGCATCGCCTTGCACGGCGTCTACGTGACGTTCCCGCGCCTCCACNTCGCCAACCTCGCCGCCGCGGTCGCCCTCGCCTCCTCCAACCAGATCAACGCAACCTGCGGCGTCTTC-GGCGACTGCGCCTCCGCCGC-GGCGACCTCTACCACTGTTCCGGCTGCTCACCGCTACGGCGAAGGGCAGTGATCGCGTGAGTGCGTCTCTTTCGTCCTCTGCTTCTAACTAGCTAGGATTTAGCACCTGCCGGTTTTGTCTGTCTCTGATTAGGATGAGTAATGTGCTGTGATGACATATCGTGCTACTGCCTGTACGGTTCTCGGTTCATGCCATGGATCAGCAACTGCTTGAAATGAATGAGATCTTGAAAGAATTTTCAGCGGCCATGCTGATTTCGTTTGAGCAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU100905 [CGCTGGCCGGCGAGGGCCAGAACCTCGTCGTCACCCAGGGCGCGTCCGGCTCCGGCTCCGGCCCCAGAGACGTGCGCATCAACTACATCCCCATCAAGGACCCCGACGTGGTGATCAACTCGCGCATCGCCTTGCACGGCGTCTACGTGACGTTCCCGCGCCTCCACNTCGCCAACCTCGCCGCCGCGGTCGCCCTCGCCTCCTCCAACCAGATCAACGCAA CTGCGGCGTCTTC GGCGACTGCGCCTCCGCCGC GGCGACCTCTACCACTGTTCCGGCTGCTCACCGCTACGGCGAAGGGCAGTGATCGCGTGAGTGCGTCTCTTTCGTCCTCTGCTTCTAACTAGCTAGGATTTAGCACCTGCCGGTTTTGTCTGTCTCTGATTAGGATGAGTAATGTGCTGTGATGACATATCGTGCTACTGCCTGTACGGTTCTCGGTTCATGCCATGGATCAGCAACTGCTTGAAATGAATGAGATCTTGAAAGAATTTTCAGCGGCCATGCTGATTTCGTTTGAGCAAAAAA ] [+] EMBL AU100904 [ CAGAACCTCGTCGTCACCCAGGGCGCGTCCGGCTCCGGCTCCGGCCCCAGAGACGTGCGCATCAACTACATCCCCATCAAGGACCCCGACGTGGTGATCAACTCGCGCATCGCCTTGCACGGCGTCTACGTGACGTTCCCGCGCCTCCACNTCGCCAACCTCGCCGCCGCGGTCGCCCTCGCCTCCTCCAACCAGATCAACGCAACCTGCGGCGTCTTC GGCGACNNCGCCTCCGCCGC GGCGACNTCTACCACTGTTCCGGCTGCTCACAGCTACGGCGAAGGGGAGT ] [+] EMBL AU161287 [ CGTTCCCGGGCTTCCACTTCGCCAACCTNGCCGCCGCGGTCGCCCTNGCTTCCTCCAACCAGATCAACGCAACCTGCGGCGTNTTCGGGCGANTGCG CTCCGCCGCGGGCGACCTCTACCACTGTTCCGGCTGCTCACCGCTACGGCGAAGGGCAGTGATCGCGTNAGTGCGTCTCTTTCGTCCTCTGCTTCTAACTAGCTAGGATTTAGCACCTGCCGGTTTTGTCTGTCTCTGATTAGGATGAGTAATGTGCTGTGATGACATATCGTGCTACTGCCTGTACGGTTCTCGGTTCATGCCATGGATCAGCAACTGCTTGAAATGAATGAGATCTTGAAAGAATTTTCAGCGGCCATGCTGATTTCGTTTGAGCAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_7311#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 333 fasta sequence [ACGTGACGTTCCCGCGCCTCCACCTCGCCAACCTCGCCGCCGCGTCGCCCTCGCCTCCTCCAACCAGATCAACGCAACCTGCGGCGTCTTCGGCGACTNCGCCTNCGCCGCGGNAGCCTCTACCACTGTTNCGGCTGCTCACCGNTACGGCGAAGGGCAGTGATCGCGTTGATGTGATGGAAAAGGACTGAAGTTTGGATCCAAACTTTGGATCTAAACACAGCCTTTGGATCGTGCTGATTAAATTGGATGCAGTAGTAAATGTCATTTTGTCTTTCATCTGTTTAAGAAGTTGTAATATGCTTCAGGCTTGAGCTATACCATGCTCCGTAA] [+] EMBL C28993 [ACGTGACGTTCCCGCGCCTCCACCTCGCCAACCTCGCCGCCGCGTCGCCCTCGCCTCCTCCAACCAGATCAACGCAACCTGCGGCGTCTTCGGCGACTNCGCCTNCGCCGCGGNAGCCTCTACCACTGTTNCGGCTGCTCACCGNTACGGCGAAGGGCAGTGATCGCGTTGATGTGATGGAAAAGGACTGAAGTTTGGATCCAAACTTTGGATCTAAACACAGCCTTTGGATCGTGCTGATTAAATTGGATGCAGTAGTAAATGTCATTTTGTCTTTCATCTGTTTAAGAAGTTGTAATATGCTTCAGGCTTGAGCTATACCATGCTCCGTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7311#0 CGCTGGCCGGCGAGGGCCAGAACCTCGTCGTCACCCAGGGCGCGTCCGGCTCCGGCTCCG 60 consensus_7311#1 ------------------------------------------------------------ consensus_7311#0 GCCCCAGAGACGTGCGCATCAACTACATCCCCATCAAGGACCCCGACGTGGTGATCAACT 120 consensus_7311#1 ------------------------------------------------------------ consensus_7311#0 CGCGCATCGCCTTGCACGGCGTCTACGTGACGTTCCCGCGCCTCCACNTCGCCAACCTCG 180 consensus_7311#1 ------------------------ACGTGACGTTCCCGCGCCTCCACCTCGCCAACCTCG 36 *********************** ************ consensus_7311#0 CCGCCGCGGTCGCCCTCGCCTCCTCCAACCAGATCAACGCAACCTGCGGCGTCTTCGGCG 240 consensus_7311#1 CCGCCGCG-TCGCCCTCGCCTCCTCCAACCAGATCAACGCAACCTGCGGCGTCTTCGGCG 95 ******** *************************************************** consensus_7311#0 ACTGCGCCTCCGCCGCGGCGACCTCTACCACTGTTCCGGCTGCTCACCGCTACGGCGAAG 300 consensus_7311#1 ACTNCGCCTNCGCCGCGGNAGCCTCTACCACTGTTNCGGCTGCTCACCGNTACGGCGAAG 155 *** ***** ******** ************** ************* ********** consensus_7311#0 GGCAGTGATCGCGTGAGTGCGTCTCTTTCGTCCTCTGCTTCTAACT---AGCTAGGATTT 357 consensus_7311#1 GGCAGTGATCGCGTTGATGTGATGGAAAAGGACTGAAGTTTGGATCCAAACTTTGGATCT 215 ************** ** * * ** ** * * * **** * consensus_7311#0 AGCACCTGCCGGTTTTGTCTGTCTCTGATTAGGATGAGTAATGTGCTGTGATGACATATC 417 consensus_7311#1 AAACACAGCC---TTTGGATCGTGCTGATTAAATTGGA-----TGCAGTAGTAA-ATGTC 266 * * *** **** * ******* ** *** ** * * ** ** consensus_7311#0 GTGCTACTGCCTGTACGGTTCTCGGTTCATGCCATGGATCAGCAACTGCTTGAAATGAAT 477 consensus_7311#1 ATTTTGTCTTTCATCTGTTTAAGAAGTTGTAATATGCTTCAG-----GCTTGAGCTATAC 321 * * * * ** * * *** **** ****** * * consensus_7311#0 GAGATCTTGAAAGAATTTTCAGCGGCCATGCTGATTTCGTTTGAGCAAAAAAAAAAAAAA 537 consensus_7311#1 CATGCTCCGTAA------------------------------------------------ 333 * * ** consensus_7311#0 AAAAAAAAA 546 consensus_7311#1 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||