Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7317 cluster # 7317       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7317#0 length = 812 sequences # 3  
consensus_7317#1 length = 790 sequences # 1  

consensusID : consensus_7317#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 812
fasta sequence
                              [AAACAATTTCCCAATTGAAATGTTTGTTCTTTTTCTTTTTAAAAGAAAAAAACTAGATCAGTTGAATTATTTCAACCCTCATGCGTGACAGATTGACAATGATAAGCACAGTTTGGACTTTGGACCAACATGAAAAGCAAACGAGAACTCAGGCTGCAAATCCAAAATCAGCAGAAATCCTTCCAGAATGCATGAGAAAAGCTTTGCACAGCATGTCAATTCACTAGCCAGCATCTCCCAGAAAGCATTTGCTCGGATGGTTCAAAATATCAGAGGGAATCCTGCATCTTTCCGATGGCTTTATGCAGATATGATTCCCAGAGAGAGATCTCCGGTGGCCTGGTCCATGCTGCAGGAAGGAATCAAAGATGCTGCTTGCAAGCACTTGCTGCTCTCCAATGGCCATTTGCATCCGATGGACCAGGATCCTTTGCAGTTCTGAATTCTGAAGAAGCACACCTTCGGCGCACCTTGCAGGGCACAGGCACAGCCTATTGGTTGATGCTCACACGTTACAAGCTCACTGCTCTGCATCTGCAGCCTCTGCTCTCATGCATCGATCGAACCTGCACTGCACCATGTCAGGCTGATGGCTGACACATCACCATTCACAGAGATGCTTTCATTCGTGATGTCAGCAGCATCCATGGATTCCATGCTGCCACGCCAGAATTATGGACCATAGAACATATGCAGATGTAGTACTGTAGTCCCCCCCTCTTCCTTCCAAGGCCATGGCAACAGCCTACAGGTAATAGACTGATAATGGCAACTACTAGGTCCAGGGGTGATGCTCAAGAAAGCCTTTGCTT]

[+] EMBL BI305531             [AAACAATTTCCCAATTGAAATGTTTGTTCTTTTTCTTTTTAAAAGAAAAAAACTAGATCAGTTGAATTATTTCAACCCTCATGCGTGACAGATTGACAATGATAAGCACAGTTTGGACTTTGGACCAACATGAAAAGCAAACGAGAACTCAGGCTGCAAATCCAAAATCAGCAGAAATCCTTCCAGAATGCATGAGAAAAGCTTTGCACAGCATGTCAATTCACTAGCCAGCATCTCCCAAAAAGCATTTGCTCGGATGGTTCAAAATATCAAAGGGAATCCTGCATCTTTCCGATGGCTTTATGCAGATATGATTCCCAGAGAGAGATCTCCGGTGGCCTGGTCCATGCTGCAGGAAGGAATCAAAGATGCTGCTTGCAAGCACTTGCTGCTCTCCAATGGCCATTTGCATCCGATGGACCAGGATCCT                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CB653125             [                                               AAAAACTAGATCAGTTGAATTCCTTCAACCCTCATGCGTGACAGATTGACAATGATAAGCACAGTTTGGACTTTGGACCAACATGAAAAGCAAACCAGAACTCAGGCTGCAAATCCAAAATCAGCAGAAATCCTTCCAGAATGCATGAGAAAAGCTTTGCACAGCATGTCAATTCACTAGCCAGCATCTCCCAGAAAGCATTTGCTCGGATGGTTCAAAATATCAGAGGGAATCCTGCATCTTTCCGATGGCTTTATGCAGATATGATTCCCAGAGAGAGATCTCCGGTGGCCTGGTCCATGCTGCAGGAAGGAATCAAAGATGCTGCTTGCAAGCACTTGCTGCTCTCCAATGGCCATTTGCATCCGATGGACCAGGATCCTTTGCAGTTCTGAATTCTGAAGAAGCACACCTTCGGCGCACCTTGCAGGGCACAGGCACAGCCTATTGGTTGATGCTCACACGTTACAAGCTCACTGCTCTGCATCTGCAGCCTCTGCTCTCATGCATCGATCGAACCTGCACTGCACCATGTCAGGCTGATGGCTGACACATCACCATTCACAGAGATGCTTTCATTCGTGATGTCAGCAGCATCCATGGATTCCATGCTGCCACGCCAGAATTATGGACCATAGAACATATGCAGATGTAGTACTGTAGTCCCCCCCTCTTCCTTCCAAGGCCATGGCAACAGCCTACAGGTAATAGACTGATAATGGCAACTACTAGGTCCAGGGGTGATGCTCAAGAAAGCCTTTGCTT]
[+] EMBL CB628797             [                                                 AAACTAGATCAGTTGAATTATTTCAACCCTCATGCGTGACAGATTGACAATGATAAGCACAGTTTGGACTTTGGACCAACATGAAAAGCAAACGAGAACTCAGGCTGCAAATCCAAAATCAGCAGAAATCCTTCCAGAATGCATGAGAAAAGCTTTGCACAGCATGTCAATTCACTAGCCAGCATCTCCCAGAAAGCATTTGCTCGGATGGTTCAAAATATCAGAGGGAATCCTGCATCTTTCCGATGGCTTTATGCAGATATGATTCCCAGAGAGAGATCTCCGGTGGCCTGGTCCATGCTGCAGGAAGGAATCAAAGATGCTGCTTGCAAGCACTTGCTGCTCTCCAATGGCCATTTGCATCCGATGGACCAGGATCCTTTGCAGTTCTGAATTCTGAAGAAGCACACCTTCGGCGCACCTTGCAGGGCACAGGCACAGCCTATTGGTTGATGCTCACACGTTACGAGCTCACTGCTCTGCATCTGCAGCCTCTGCTCTCATGCATCGATCGAACCTGCACTGCACCATGTCAGGCTGATGGCTGACACATCACCATTCACAGAGATGCTTTCATTCGTGATGTCAGCAGCATCCATGGATTCCATGCTGCCACGCCAGAATTATGGACCATAGAACATATGCAGATGTAGTACTGTAGTCCCCCCCTCTTCCTTCCAAGGCCATGGCAACAGCCTACAGGTAATAGACTGATAGTGGCAACTACTAGGTCCAGGGGTGATGCTCAAGAAAGCCTTTGCTT]


>consensus_7317#0 AAACAATTTCCCAATTGAAATGTTTGTTCTTTTTCTTTTTAAAAGAAAAAAACTAGATCA GTTGAATTATTTCAACCCTCATGCGTGACAGATTGACAATGATAAGCACAGTTTGGACTT TGGACCAACATGAAAAGCAAACGAGAACTCAGGCTGCAAATCCAAAATCAGCAGAAATCC TTCCAGAATGCATGAGAAAAGCTTTGCACAGCATGTCAATTCACTAGCCAGCATCTCCCA GAAAGCATTTGCTCGGATGGTTCAAAATATCAGAGGGAATCCTGCATCTTTCCGATGGCT TTATGCAGATATGATTCCCAGAGAGAGATCTCCGGTGGCCTGGTCCATGCTGCAGGAAGG AATCAAAGATGCTGCTTGCAAGCACTTGCTGCTCTCCAATGGCCATTTGCATCCGATGGA CCAGGATCCTTTGCAGTTCTGAATTCTGAAGAAGCACACCTTCGGCGCACCTTGCAGGGC ACAGGCACAGCCTATTGGTTGATGCTCACACGTTACAAGCTCACTGCTCTGCATCTGCAG CCTCTGCTCTCATGCATCGATCGAACCTGCACTGCACCATGTCAGGCTGATGGCTGACAC ATCACCATTCACAGAGATGCTTTCATTCGTGATGTCAGCAGCATCCATGGATTCCATGCT GCCACGCCAGAATTATGGACCATAGAACATATGCAGATGTAGTACTGTAGTCCCCCCCTC TTCCTTCCAAGGCCATGGCAACAGCCTACAGGTAATAGACTGATAATGGCAACTACTAGG TCCAGGGGTGATGCTCAAGAAAGCCTTTGCTT



consensusID : consensus_7317#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 790
fasta sequence
                              [GCTGGGATCGCGCAAAACCCGTCCATTGTAAAGAATGGATGTTCTTAGCCCACATCCTGCTATTCTCCAACGAATTACATATCCAAACAGTGCATGCATGAGCAATTGTTTCTAATACCTTCTGAACCACAATTAAAAATTCGGCACCATGTTGAGAAAGATTTGTGAGGGGGATTCATACACCAGCAGATTCACCGCCTAGCCACCATGGGCGGCTGCCCAGCCTCGTCAGCGAATGGTCTACTGAATTTTTTGCATGTTTTTCAAGGATTGGGATACCATTTCCACAGCAAATATTAGCTATAGTTAGGGATGTCCGGGCTCTAATTTTTTCTGGATCCACCACTGGATTTATAGGCTATCAGCCTATCATATCAAGGATTGGAATAACAGGATCATAGATCTTTCAAAGAAAAAAAAGAACACTGAATAATGGGTTCGGTTTGCGCACCTTTGCAGTTCTGAATTCTGAAGAAGCACACCTTCGGCGCACCTTGCAGGGCACAGGCACAGCCTATTGGTTGATGCTCACACGTTACAAGCTCACTGCTCTGCATCTGCAGCCTCTGCTCTCATGCATCGATCGAACCTGCACTGCACCATGTCAGGCTGATGGCTGACACATCACCATTCACAGAGATGCTTTCATTCGTGATGTCAGCAGCATCCATGGATTCCATGCTGCCACGCCAGAATTATGGACCATAGAACATATGCAGATGTAGTACTGTAGTCCCCCCCTCTTCCTTCCAAGGCCATGGCAACAGCCTACAGGTAATAGACTGATAAT]

[+] EMBL CB652875             [GCTGGGATCGCGCAAAACCCGTCCATTGTAAAGAATGGATGTTCTTAGCCCACATCCTGCTATTCTCCAACGAATTACATATCCAAACAGTGCATGCATGAGCAATTGTTTCTAATACCTTCTGAACCACAATTAAAAATTCGGCACCATGTTGAGAAAGATTTGTGAGGGGGATTCATACACCAGCAGATTCACCGCCTAGCCACCATGGGCGGCTGCCCAGCCTCGTCAGCGAATGGTCTACTGAATTTTTTGCATGTTTTTCAAGGATTGGGATACCATTTCCACAGCAAATATTAGCTATAGTTAGGGATGTCCGGGCTCTAATTTTTTCTGGATCCACCACTGGATTTATAGGCTATCAGCCTATCATATCAAGGATTGGAATAACAGGATCATAGATCTTTCAAAGAAAAAAAAGAACACTGAATAATGGGTTCGGTTTGCGCACCTTTGCAGTTCTGAATTCTGAAGAAGCACACCTTCGGCGCACCTTGCAGGGCACAGGCACAGCCTATTGGTTGATGCTCACACGTTACAAGCTCACTGCTCTGCATCTGCAGCCTCTGCTCTCATGCATCGATCGAACCTGCACTGCACCATGTCAGGCTGATGGCTGACACATCACCATTCACAGAGATGCTTTCATTCGTGATGTCAGCAGCATCCATGGATTCCATGCTGCCACGCCAGAATTATGGACCATAGAACATATGCAGATGTAGTACTGTAGTCCCCCCCTCTTCCTTCCAAGGCCATGGCAACAGCCTACAGGTAATAGACTGATAAT]


>consensus_7317#1 GCTGGGATCGCGCAAAACCCGTCCATTGTAAAGAATGGATGTTCTTAGCCCACATCCTGC TATTCTCCAACGAATTACATATCCAAACAGTGCATGCATGAGCAATTGTTTCTAATACCT TCTGAACCACAATTAAAAATTCGGCACCATGTTGAGAAAGATTTGTGAGGGGGATTCATA CACCAGCAGATTCACCGCCTAGCCACCATGGGCGGCTGCCCAGCCTCGTCAGCGAATGGT CTACTGAATTTTTTGCATGTTTTTCAAGGATTGGGATACCATTTCCACAGCAAATATTAG CTATAGTTAGGGATGTCCGGGCTCTAATTTTTTCTGGATCCACCACTGGATTTATAGGCT ATCAGCCTATCATATCAAGGATTGGAATAACAGGATCATAGATCTTTCAAAGAAAAAAAA GAACACTGAATAATGGGTTCGGTTTGCGCACCTTTGCAGTTCTGAATTCTGAAGAAGCAC ACCTTCGGCGCACCTTGCAGGGCACAGGCACAGCCTATTGGTTGATGCTCACACGTTACA AGCTCACTGCTCTGCATCTGCAGCCTCTGCTCTCATGCATCGATCGAACCTGCACTGCAC CATGTCAGGCTGATGGCTGACACATCACCATTCACAGAGATGCTTTCATTCGTGATGTCA GCAGCATCCATGGATTCCATGCTGCCACGCCAGAATTATGGACCATAGAACATATGCAGA TGTAGTACTGTAGTCCCCCCCTCTTCCTTCCAAGGCCATGGCAACAGCCTACAGGTAATA GACTGATAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7317#0      -----------AAACAATTTCCCAATTG-AAATGTTTGTTCTTTTTCTTTTTAAAAGAAA 48
consensus_7317#1      GCTGGGATCGCGCAAAACCCGTCCATTGTAAAGAATGGATGTTCTTAGCCCACATCCTGC 60
                                   * **     * **** ***   * * * ** **       *      

consensus_7317#0      AAAACTAGATCAGTTGAATTATTTCAACCCT-CATGCGTGACAGATTGACAATGATA--- 104
consensus_7317#1      TATTCTCCAACGAATTACATATCCAAACAGTGCATGCATGAGCAATTGTTTCTAATACCT 120
                       *  **  * *   * *  ***   ***  * ***** ***   ****    * ***   

consensus_7317#0      -----AGCACAGTTTGGACTTTGG-ACCAACATGAAAAGCAAACGAGAACTCAGGCTGCA 158
consensus_7317#1      TCTGAACCACAATTAAAAATTCGGCACCATGTTGAGAAAGATTTGTGAGGGGGATTCATA 180
                           * **** **   * ** ** ****   *** **  *   * **           *

consensus_7317#0      AATC--CAAAATCAGCAGAAATCCTTCCAGAATGCATGAGAAAAGCTTTGCACAGCATGT 216
consensus_7317#1      CACCAGCAGATTCACCGCCTAGCCACCATGGGCGGCTGCCCAGCCTCGTCAGCGAATGGT 240
                       * *  ** * *** *    * **  *  *   *  **   *      *   *     **

consensus_7317#0      CAATTCACTAGCCAGCATCTCCCAGAAAGCATTTGCTCGGATGGTT-CA--AAATATCAG 273
consensus_7317#1      CTACTGAATTTTTTGCATGTTTTTCAAGGATTGGGATACCATTTCCACAGCAAATATTAG 300
                      * * * * *     **** *     ** *  *  * *   **     **  ****** **

consensus_7317#0      AGGGAATCCTGCATCTTTCCGATGGCTTTATGCAGATATGATTCCCAGAGAGAGATCTCC 333
consensus_7317#1      CTATAGTTAGGGATGT--CCG--GGCTCTAATTTTTTCTGGATCCACCACTGGATTTATA 356
                          * *   * ** *  ***  **** **      * **  ***   *  *   *    

consensus_7317#0      GGTGGCCTGGTCCATGCTGCAGGAAGGAATCAAAGATGCTGCTTGCAAGCACTTGCTGCT 393
consensus_7317#1      GGCTATCAG---CCTATCATATCAAGGATTGGAATAACAGGATCATAGATCTTTCAAAGA 413
                      **    * *   * *     *  ***** *  ** *    * *   *     **      

consensus_7317#0      CTCCAATGGCCATTTG-CATCCGAT--GGACCAGGATCCTTTGCAGTTCTGAATTCTGAA 450
consensus_7317#1      AAAAAAAGAACACTGAATAATGGGTTCGGTTTGCGCACCTTTGCAGTTCTGAATTCTGAA 473
                          ** *  ** *    *   * *  **     *  ***********************

consensus_7317#0      GAAGCACACCTTCGGCGCACCTTGCAGGGCACAGGCACAGCCTATTGGTTGATGCTCACA 510
consensus_7317#1      GAAGCACACCTTCGGCGCACCTTGCAGGGCACAGGCACAGCCTATTGGTTGATGCTCACA 533
                      ************************************************************

consensus_7317#0      CGTTACAAGCTCACTGCTCTGCATCTGCAGCCTCTGCTCTCATGCATCGATCGAACCTGC 570
consensus_7317#1      CGTTACAAGCTCACTGCTCTGCATCTGCAGCCTCTGCTCTCATGCATCGATCGAACCTGC 593
                      ************************************************************

consensus_7317#0      ACTGCACCATGTCAGGCTGATGGCTGACACATCACCATTCACAGAGATGCTTTCATTCGT 630
consensus_7317#1      ACTGCACCATGTCAGGCTGATGGCTGACACATCACCATTCACAGAGATGCTTTCATTCGT 653
                      ************************************************************

consensus_7317#0      GATGTCAGCAGCATCCATGGATTCCATGCTGCCACGCCAGAATTATGGACCATAGAACAT 690
consensus_7317#1      GATGTCAGCAGCATCCATGGATTCCATGCTGCCACGCCAGAATTATGGACCATAGAACAT 713
                      ************************************************************

consensus_7317#0      ATGCAGATGTAGTACTGTAGTCCCCCCCTCTTCCTTCCAAGGCCATGGCAACAGCCTACA 750
consensus_7317#1      ATGCAGATGTAGTACTGTAGTCCCCCCCTCTTCCTTCCAAGGCCATGGCAACAGCCTACA 773
                      ************************************************************

consensus_7317#0      GGTAATAGACTGATAATGGCAACTACTAGGTCCAGGGGTGATGCTCAAGAAAGCCTTTGC 810
consensus_7317#1      GGTAATAGACTGATAAT------------------------------------------- 790
                      *****************                                           

consensus_7317#0      TT 812
consensus_7317#1      --
                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)