These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7317#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 812 fasta sequence [AAACAATTTCCCAATTGAAATGTTTGTTCTTTTTCTTTTTAAAAGAAAAAAACTAGATCAGTTGAATTATTTCAACCCTCATGCGTGACAGATTGACAATGATAAGCACAGTTTGGACTTTGGACCAACATGAAAAGCAAACGAGAACTCAGGCTGCAAATCCAAAATCAGCAGAAATCCTTCCAGAATGCATGAGAAAAGCTTTGCACAGCATGTCAATTCACTAGCCAGCATCTCCCAGAAAGCATTTGCTCGGATGGTTCAAAATATCAGAGGGAATCCTGCATCTTTCCGATGGCTTTATGCAGATATGATTCCCAGAGAGAGATCTCCGGTGGCCTGGTCCATGCTGCAGGAAGGAATCAAAGATGCTGCTTGCAAGCACTTGCTGCTCTCCAATGGCCATTTGCATCCGATGGACCAGGATCCTTTGCAGTTCTGAATTCTGAAGAAGCACACCTTCGGCGCACCTTGCAGGGCACAGGCACAGCCTATTGGTTGATGCTCACACGTTACAAGCTCACTGCTCTGCATCTGCAGCCTCTGCTCTCATGCATCGATCGAACCTGCACTGCACCATGTCAGGCTGATGGCTGACACATCACCATTCACAGAGATGCTTTCATTCGTGATGTCAGCAGCATCCATGGATTCCATGCTGCCACGCCAGAATTATGGACCATAGAACATATGCAGATGTAGTACTGTAGTCCCCCCCTCTTCCTTCCAAGGCCATGGCAACAGCCTACAGGTAATAGACTGATAATGGCAACTACTAGGTCCAGGGGTGATGCTCAAGAAAGCCTTTGCTT] [+] EMBL BI305531 [AAACAATTTCCCAATTGAAATGTTTGTTCTTTTTCTTTTTAAAAGAAAAAAACTAGATCAGTTGAATTATTTCAACCCTCATGCGTGACAGATTGACAATGATAAGCACAGTTTGGACTTTGGACCAACATGAAAAGCAAACGAGAACTCAGGCTGCAAATCCAAAATCAGCAGAAATCCTTCCAGAATGCATGAGAAAAGCTTTGCACAGCATGTCAATTCACTAGCCAGCATCTCCCAAAAAGCATTTGCTCGGATGGTTCAAAATATCAAAGGGAATCCTGCATCTTTCCGATGGCTTTATGCAGATATGATTCCCAGAGAGAGATCTCCGGTGGCCTGGTCCATGCTGCAGGAAGGAATCAAAGATGCTGCTTGCAAGCACTTGCTGCTCTCCAATGGCCATTTGCATCCGATGGACCAGGATCCT ] [+] EMBL CB653125 [ AAAAACTAGATCAGTTGAATTCCTTCAACCCTCATGCGTGACAGATTGACAATGATAAGCACAGTTTGGACTTTGGACCAACATGAAAAGCAAACCAGAACTCAGGCTGCAAATCCAAAATCAGCAGAAATCCTTCCAGAATGCATGAGAAAAGCTTTGCACAGCATGTCAATTCACTAGCCAGCATCTCCCAGAAAGCATTTGCTCGGATGGTTCAAAATATCAGAGGGAATCCTGCATCTTTCCGATGGCTTTATGCAGATATGATTCCCAGAGAGAGATCTCCGGTGGCCTGGTCCATGCTGCAGGAAGGAATCAAAGATGCTGCTTGCAAGCACTTGCTGCTCTCCAATGGCCATTTGCATCCGATGGACCAGGATCCTTTGCAGTTCTGAATTCTGAAGAAGCACACCTTCGGCGCACCTTGCAGGGCACAGGCACAGCCTATTGGTTGATGCTCACACGTTACAAGCTCACTGCTCTGCATCTGCAGCCTCTGCTCTCATGCATCGATCGAACCTGCACTGCACCATGTCAGGCTGATGGCTGACACATCACCATTCACAGAGATGCTTTCATTCGTGATGTCAGCAGCATCCATGGATTCCATGCTGCCACGCCAGAATTATGGACCATAGAACATATGCAGATGTAGTACTGTAGTCCCCCCCTCTTCCTTCCAAGGCCATGGCAACAGCCTACAGGTAATAGACTGATAATGGCAACTACTAGGTCCAGGGGTGATGCTCAAGAAAGCCTTTGCTT] [+] EMBL CB628797 [ AAACTAGATCAGTTGAATTATTTCAACCCTCATGCGTGACAGATTGACAATGATAAGCACAGTTTGGACTTTGGACCAACATGAAAAGCAAACGAGAACTCAGGCTGCAAATCCAAAATCAGCAGAAATCCTTCCAGAATGCATGAGAAAAGCTTTGCACAGCATGTCAATTCACTAGCCAGCATCTCCCAGAAAGCATTTGCTCGGATGGTTCAAAATATCAGAGGGAATCCTGCATCTTTCCGATGGCTTTATGCAGATATGATTCCCAGAGAGAGATCTCCGGTGGCCTGGTCCATGCTGCAGGAAGGAATCAAAGATGCTGCTTGCAAGCACTTGCTGCTCTCCAATGGCCATTTGCATCCGATGGACCAGGATCCTTTGCAGTTCTGAATTCTGAAGAAGCACACCTTCGGCGCACCTTGCAGGGCACAGGCACAGCCTATTGGTTGATGCTCACACGTTACGAGCTCACTGCTCTGCATCTGCAGCCTCTGCTCTCATGCATCGATCGAACCTGCACTGCACCATGTCAGGCTGATGGCTGACACATCACCATTCACAGAGATGCTTTCATTCGTGATGTCAGCAGCATCCATGGATTCCATGCTGCCACGCCAGAATTATGGACCATAGAACATATGCAGATGTAGTACTGTAGTCCCCCCCTCTTCCTTCCAAGGCCATGGCAACAGCCTACAGGTAATAGACTGATAGTGGCAACTACTAGGTCCAGGGGTGATGCTCAAGAAAGCCTTTGCTT] consensusID : consensus_7317#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 790 fasta sequence [GCTGGGATCGCGCAAAACCCGTCCATTGTAAAGAATGGATGTTCTTAGCCCACATCCTGCTATTCTCCAACGAATTACATATCCAAACAGTGCATGCATGAGCAATTGTTTCTAATACCTTCTGAACCACAATTAAAAATTCGGCACCATGTTGAGAAAGATTTGTGAGGGGGATTCATACACCAGCAGATTCACCGCCTAGCCACCATGGGCGGCTGCCCAGCCTCGTCAGCGAATGGTCTACTGAATTTTTTGCATGTTTTTCAAGGATTGGGATACCATTTCCACAGCAAATATTAGCTATAGTTAGGGATGTCCGGGCTCTAATTTTTTCTGGATCCACCACTGGATTTATAGGCTATCAGCCTATCATATCAAGGATTGGAATAACAGGATCATAGATCTTTCAAAGAAAAAAAAGAACACTGAATAATGGGTTCGGTTTGCGCACCTTTGCAGTTCTGAATTCTGAAGAAGCACACCTTCGGCGCACCTTGCAGGGCACAGGCACAGCCTATTGGTTGATGCTCACACGTTACAAGCTCACTGCTCTGCATCTGCAGCCTCTGCTCTCATGCATCGATCGAACCTGCACTGCACCATGTCAGGCTGATGGCTGACACATCACCATTCACAGAGATGCTTTCATTCGTGATGTCAGCAGCATCCATGGATTCCATGCTGCCACGCCAGAATTATGGACCATAGAACATATGCAGATGTAGTACTGTAGTCCCCCCCTCTTCCTTCCAAGGCCATGGCAACAGCCTACAGGTAATAGACTGATAAT] [+] EMBL CB652875 [GCTGGGATCGCGCAAAACCCGTCCATTGTAAAGAATGGATGTTCTTAGCCCACATCCTGCTATTCTCCAACGAATTACATATCCAAACAGTGCATGCATGAGCAATTGTTTCTAATACCTTCTGAACCACAATTAAAAATTCGGCACCATGTTGAGAAAGATTTGTGAGGGGGATTCATACACCAGCAGATTCACCGCCTAGCCACCATGGGCGGCTGCCCAGCCTCGTCAGCGAATGGTCTACTGAATTTTTTGCATGTTTTTCAAGGATTGGGATACCATTTCCACAGCAAATATTAGCTATAGTTAGGGATGTCCGGGCTCTAATTTTTTCTGGATCCACCACTGGATTTATAGGCTATCAGCCTATCATATCAAGGATTGGAATAACAGGATCATAGATCTTTCAAAGAAAAAAAAGAACACTGAATAATGGGTTCGGTTTGCGCACCTTTGCAGTTCTGAATTCTGAAGAAGCACACCTTCGGCGCACCTTGCAGGGCACAGGCACAGCCTATTGGTTGATGCTCACACGTTACAAGCTCACTGCTCTGCATCTGCAGCCTCTGCTCTCATGCATCGATCGAACCTGCACTGCACCATGTCAGGCTGATGGCTGACACATCACCATTCACAGAGATGCTTTCATTCGTGATGTCAGCAGCATCCATGGATTCCATGCTGCCACGCCAGAATTATGGACCATAGAACATATGCAGATGTAGTACTGTAGTCCCCCCCTCTTCCTTCCAAGGCCATGGCAACAGCCTACAGGTAATAGACTGATAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7317#0 -----------AAACAATTTCCCAATTG-AAATGTTTGTTCTTTTTCTTTTTAAAAGAAA 48 consensus_7317#1 GCTGGGATCGCGCAAAACCCGTCCATTGTAAAGAATGGATGTTCTTAGCCCACATCCTGC 60 * ** * **** *** * * * ** ** * consensus_7317#0 AAAACTAGATCAGTTGAATTATTTCAACCCT-CATGCGTGACAGATTGACAATGATA--- 104 consensus_7317#1 TATTCTCCAACGAATTACATATCCAAACAGTGCATGCATGAGCAATTGTTTCTAATACCT 120 * ** * * * * *** *** * ***** *** **** * *** consensus_7317#0 -----AGCACAGTTTGGACTTTGG-ACCAACATGAAAAGCAAACGAGAACTCAGGCTGCA 158 consensus_7317#1 TCTGAACCACAATTAAAAATTCGGCACCATGTTGAGAAAGATTTGTGAGGGGGATTCATA 180 * **** ** * ** ** **** *** ** * * ** * consensus_7317#0 AATC--CAAAATCAGCAGAAATCCTTCCAGAATGCATGAGAAAAGCTTTGCACAGCATGT 216 consensus_7317#1 CACCAGCAGATTCACCGCCTAGCCACCATGGGCGGCTGCCCAGCCTCGTCAGCGAATGGT 240 * * ** * *** * * ** * * * ** * * * ** consensus_7317#0 CAATTCACTAGCCAGCATCTCCCAGAAAGCATTTGCTCGGATGGTT-CA--AAATATCAG 273 consensus_7317#1 CTACTGAATTTTTTGCATGTTTTTCAAGGATTGGGATACCATTTCCACAGCAAATATTAG 300 * * * * * **** * ** * * * * ** ** ****** ** consensus_7317#0 AGGGAATCCTGCATCTTTCCGATGGCTTTATGCAGATATGATTCCCAGAGAGAGATCTCC 333 consensus_7317#1 CTATAGTTAGGGATGT--CCG--GGCTCTAATTTTTTCTGGATCCACCACTGGATTTATA 356 * * * ** * *** **** ** * ** *** * * * consensus_7317#0 GGTGGCCTGGTCCATGCTGCAGGAAGGAATCAAAGATGCTGCTTGCAAGCACTTGCTGCT 393 consensus_7317#1 GGCTATCAG---CCTATCATATCAAGGATTGGAATAACAGGATCATAGATCTTTCAAAGA 413 ** * * * * * ***** * ** * * * * ** consensus_7317#0 CTCCAATGGCCATTTG-CATCCGAT--GGACCAGGATCCTTTGCAGTTCTGAATTCTGAA 450 consensus_7317#1 AAAAAAAGAACACTGAATAATGGGTTCGGTTTGCGCACCTTTGCAGTTCTGAATTCTGAA 473 ** * ** * * * * ** * *********************** consensus_7317#0 GAAGCACACCTTCGGCGCACCTTGCAGGGCACAGGCACAGCCTATTGGTTGATGCTCACA 510 consensus_7317#1 GAAGCACACCTTCGGCGCACCTTGCAGGGCACAGGCACAGCCTATTGGTTGATGCTCACA 533 ************************************************************ consensus_7317#0 CGTTACAAGCTCACTGCTCTGCATCTGCAGCCTCTGCTCTCATGCATCGATCGAACCTGC 570 consensus_7317#1 CGTTACAAGCTCACTGCTCTGCATCTGCAGCCTCTGCTCTCATGCATCGATCGAACCTGC 593 ************************************************************ consensus_7317#0 ACTGCACCATGTCAGGCTGATGGCTGACACATCACCATTCACAGAGATGCTTTCATTCGT 630 consensus_7317#1 ACTGCACCATGTCAGGCTGATGGCTGACACATCACCATTCACAGAGATGCTTTCATTCGT 653 ************************************************************ consensus_7317#0 GATGTCAGCAGCATCCATGGATTCCATGCTGCCACGCCAGAATTATGGACCATAGAACAT 690 consensus_7317#1 GATGTCAGCAGCATCCATGGATTCCATGCTGCCACGCCAGAATTATGGACCATAGAACAT 713 ************************************************************ consensus_7317#0 ATGCAGATGTAGTACTGTAGTCCCCCCCTCTTCCTTCCAAGGCCATGGCAACAGCCTACA 750 consensus_7317#1 ATGCAGATGTAGTACTGTAGTCCCCCCCTCTTCCTTCCAAGGCCATGGCAACAGCCTACA 773 ************************************************************ consensus_7317#0 GGTAATAGACTGATAATGGCAACTACTAGGTCCAGGGGTGATGCTCAAGAAAGCCTTTGC 810 consensus_7317#1 GGTAATAGACTGATAAT------------------------------------------- 790 ***************** consensus_7317#0 TT 812 consensus_7317#1 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||