These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7334#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 489 fasta sequence [ACACGGTGGTGTCGATCTCCGCCATCGGGCACCAGGCTCGGCCCGTGGTCTCCTTCTTCTGCCCTGCTCGTCTCCACGGGGTTCTTCCTCGTGCCGTGCCGTCCTGCTCCGGATCTCCCGCCCCCCTCCAGCACCATCGACGAGTCCGGCAAGGAGCTCATCGACTTCGTCGCCGGGTGCCGCCCGGAGCACCACCCCCCGGAGGCGGCGGAGGCCGCCGTGGACGTGCCTCCGGAGCCGGAGATCTAGAAAATCGAGGGTGGCGGGCGTGGCGCGGGCGGCCGGCGGAATCAGCGGCGCCTCGTCGCCGGGCGCGGTGGGGTTGTGTGGGGTAATCGCCAGCATGGGCCCACCTGGAAGTGCGTGCCACCCCCGGTGTACGGTGCGCCCGTGGGCTCTGTGTTAGCGTAGGATTCCGCCTCCGTTGTGGTCCGGGGTGTACAATACCATTCTCAATAAAAACATGGCATAAATTCGTCCTAAAAAAAA] [+] EMBL BI804223 [ACACGGTGGTGTCGATCTCCGCCATCGGGCACCAGGCTCGGCCCGTGGTCTCCTTCTTCTGCCCTGCTCGTCTCCACGGGGTTCTTCCTCGTGCCGTGCCGTCCTGCTCCGGATCTCCCGCCCCCCTCCAGCACCATCGACGAGTCCGGCAAGGAGCTCATCGACTTCGTCGCCGGGTGCCGCCCGGAGCACCACCCCCCGGAGGCGGCGGAGGCCGCCGTGGACGTGCCTCCGGAGCCGGAGATCTAGAAAATCGAGGGTGGCGGGCGTGGCGCGGGCGGCCGGCGGAATCAGCGGCGCCTCGTCGCCGGGCGCGGTGGGGTTGTGTGGGGTAATCGCCAGCATGGGCCCACCTGGAAGTGCGTGCCACCCCCGGTGTACGGTGCGCCCGTGGGCTCTGTGTTAGCGTAGGATTCCGCCTCCGTTGTGGTCCGGGGTGTACAATACCATTCTCAATAAAAACATGGCATAAATTCGTCCTAAAAAAAA] consensusID : consensus_7334#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 431 fasta sequence [CTCTTTANCCCCTCCATCCCTTTCCCCACTCACCAGTAGCCACCACCACATCTCGCAAGGCCAAAAGCCCTAGCCACCGTAGTAGTAGCTAGTAGCTATAGCAAGGTAGAGAGAGCGCTCTAGATCTCTCTCTCGCGGGGCGCTGGGCAGATCGACCTGGCGATGGCGACCAAGGGGAATAAGCTCGGGGAGGTAATGTGGGAGCACCGGCTGCAGGCGGCGGCCGTGGTGGCGCTGGTGGCGGCCACGGTGGTGTCGATCTCCGCCATCGGGCCCAGGCTCGGCGCCGTGGTCTCCTTCTTC-TGGCCGCTGCTCGTCTTCACGGGGTTTTTCCTCGTGGCCGTGGCCGTCCTGCTCCGGATCTNGCCGNCCTTTTNCAGCACCATCGACGAGTCCGGCAAGGAGCTCATNGACTTCGTGCCGGGTGCCGN] [+] EMBL OS0179A [CTCTTTANCCCCTCCATCCCTTTCCCCACTCACCAGTAGCCACCACCACATCTCGCAAGGCCAAAAGCCCTAGCCACCGTAGTAGTAGCTAGTAGCTATAGCAAGGTAGAGAGAGCGCTCTAGATCTCTCTCTCGCGGGGCGCTGGGCAGATCGACCTGGCGATGGCGACCAAGGGGAATAAGCTCGGGGAGGTAATGTGGGAGCACCGGCTGCAGGCGGCGGCCGTGGTGGCGCTGGTGGCGGCCACGGTGGTGTCGATCTCCGCCATCGGGCCCAGGCTCGGCGCCGTGGTCTCCTTCTTCTTGGCCGCTGCTCGTCTTCACGGGGTTTTTCCTCGTGGCCGT ] [+] EMBL C74689 [ ctcnNCCCCTCCATCCCTTTCCCCACNCACCAGTAGCCACCACCACATCTCGCAAGGCCAAAAGCCCTAGCCACCGTAGTAGTAGCTAGTAGCTATAGCAAGGTAGAGAGAGCGCTCTAGATCTCTCTCTCGCGGGGCGCTGGGCAGATCGACCTGGCGATGGCGACCAAGGGGAATAAGCTCGGGGAGGTAATGTGGGAGCACCGGCTGCAAGCGGCGGNCGTGGTGGCGCTGGTGGCGGCCACGGTGGTGTCGATCTCCGNCATCGGGGCCAGGCTCGGCGCCGTGGTCTCCTTCTTN TGGGCGCTGCTCGTnt ] [+] EMBL OS1049A [ TCTAGATCTCTCTCTCGCGGGGCGCTGGGCAGATCGACCTGGCGATGGCGACCAAGGGGAATAAGCTCGGGGAGGTAATGTGGGAGCACCGGCTGCAGGCGGCGGCCGTGGTGGCGCTGGTGGCGGCCACGGTGGTGTCGATCTCCGCCATCGGGCCCAGGCTCGGCGCCGTGGTCTCCTTCTTC TGGCCGCTGCTCGTCTCCACGGGGTTCTTCCTCGTGGCCGTGGCCGTCCTGCTCCGGATCTNGCCGNCCTTTTNCAGCACCATCGACGAGTCCGGCAAGGAGCTCATNGACTTCGTGCCGGGTGCCGN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7334#0 ACACGGTGGTGTCGATCTCCGCCATCGGGCACCAGGCTCGGCCCGTGGTCTCCTTCTTCT 60 consensus_7334#1 -----------------------------------------CTCTTTANCCCCTCCATCC 19 * * * * *** * ** consensus_7334#0 GCCCTGCTCGTCTCCACGGGGTTCTTCCTCGTGCCGTGCCGTCCTGCTCCGGATCTCCCG 120 consensus_7334#1 CTTTCCCCACTCACCAGTAGCCACCACCACATCTCGCAAGGCCAAAAGCCCTAGCCACCG 79 * ** *** * * ** * * ** * * ** * * *** consensus_7334#0 CCCCCCT--CCAGCACCATCGACGAGTCCGGCAAGGAGCTCATCGACTTCGTCGCCGGGT 178 consensus_7334#1 TAGTAGTAGCTAGTAGCTATAGCAAGGTAGAGAGAGCGCTC-TAGATCTCTCTCTCGCGG 138 * * ** * * * ** * * * **** * ** ** ** * consensus_7334#0 GCCGCCCGGAGCACCACCCCCCGGAGGCGGCGGAGGCCGCCGTGGACGTGCCTCCGGAGC 238 consensus_7334#1 GGCGCTGGGCAGATCGACCT-----GGCGATGGCGACCAAGGGGAATAAGCTCGGGGAGG 193 * *** ** * * ** **** ** * ** * * * ** **** consensus_7334#0 CGGAGATCTAGAA--AATCGAGGGTGGCGGGCGTGGCGCGGGCGGCCGGCGGAATCAGCG 296 consensus_7334#1 TAATGTGGGAGCACCGGCTGCAGGCGGCGGCCGTGGTG-GCGCTGGTGGCGGCCACGGTG 252 * ** * * ** ***** ***** * * ** * ***** * * * consensus_7334#0 GCGCC--TCGTCGCCGGGCGCGGTGGGGTTGTGTGGGGTAATCGCCAGCATGGGCCCACC 354 consensus_7334#1 GTGTCGATCTCCGCCAT-CGGGCCCAGGCTCGGCGCCGTGGTCTCCTTCTTCTGGCCGCT 311 * * * ** **** ** * ** * * * ** ** ** * * * ** * consensus_7334#0 TGGAAGTGCGTGCCACCCCCGGTGTACGGTGCGCCCGTGGGCTCTGTGTTAGCGTAGGAT 414 consensus_7334#1 -----GCTCGTCTTCACGGGGTTTTTCCTCGTGGCCGTGGCCGTCCTGCT----CCGGAT 362 * *** * * * * * * * ****** * ** * **** consensus_7334#0 TCCGCCTCCGTTGTGGTCCGGGGTGTACAATACCATTCTCAATAAAAACATGGCATAAAT 474 consensus_7334#1 CTNGCCGNCCTTTTNCAGCACCATCGACGAGTCCGG---CAAGGAGCTCATNG----ACT 415 *** * ** * * * ** * ** *** * *** * * * consensus_7334#0 TCGTCCTAAAAAAAA- 489 consensus_7334#1 TCGTGCCGGGTGCCGN 431 **** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||