These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7355#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 393 fasta sequence [GAAGGACGCGGCGCGGGGCGGCAGCCACTCCCGGGCAAAGGTTTTTCAGACACACAAAGCCACCACG-TGCTGCAAGGAAGGAGAAGCAGCTTGAGACGCTGAGGGCTGCTCTTGGTTTGGATGTTGATGATAAAGCGAAGAAGAACGCTGATGTAGAAAGTGATGTGGAATCTGGGGAGCTTGTTCCTGGGAAGGAGTATGAAGGTTTGGAAATAGATGGGCCAGAAGATGGCAAGACTTTAAAGGATGACAGAAGGCATGCAAAGAAGGGTAAGAAGGATAAAGGGAGTGATGCAAAGAGTCATGGCAAAAGTTCTAGGAAGATTAAACTTGGTCATGATTCAGATTCAGATCATGATGATAACAAAAAAAAAAAAAACAGAGCGGCCGCTC] [+] EMBL CB966925 [GAAGGACGCGGCGCGGGGCGGCAGCCACTCCCGGGCAAAGGTTTTTCAGACACACAAAGCCACCACG TGCTGCAAGGAAGGAGAAGCAGCTTGAGACGCTGAGGGCTGCTCTTGGTTTGGATGTTGATGATAAAGCGAAGAAGAACGCTGATGTAGAAAGTGATGTGGAATCTGGGGAGCTTGTTCCTGGGAAGGAGTATGAAGGTTTGGAAATAGATGGGCCAGAAGATGGCAAGACTTTAAAGGATGACAGAAGGCATGCAAAGAAGGGTAAGAAGGATAAAGGGAGTGATGCAAAGAGTCATGGCAAAAGTTCTAGGAAGATTAAACTTGGTCATGATTCAGATTCAGATCATGATGATAACAAAAAAAAAAAAAACAGAG ] [+] EMBL BI306722 [ AGGACGCGGCGCGGGGCGGCAGCCACTCCCGGGCAAAGGTTTTTCAGACACACAAAGCCACCACGTTGCTGCAAGGAAGGAGAAGCAGCTTGAGACGCTGAGGGCTGCTCTTGGTTTGGATGTTGATGATAAAGCGAAGAAGAACGCTGATGTAGAAAGTGATGTGGAATCTGGGGAGCTTGTTCCTGGGAAGGAGTATGAAGGTTTGGAAATAGATGGGCCAGAAGATGGCAAGACTTTAAAGGATGACAGAAGGCATGCAAAGAAGGGTAAGAAGGATAAAGGGAGTGATGCAAAGAGTCATGGCAAAAGTTCTAGGAAGATTAAACTTGGTCATGATTCAGATTCAGATCATGATGATAACAAAAAAAAAAAAAACAGAGCGGCCGCTC] consensusID : consensus_7355#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 354 fasta sequence [AAGGACGCGGCGCGGCAGACACACAAAGCCACCACGTTGCTGCAAGGAAGGAGAAGCAGCTTGAGACGCTGAGGGCTGCTCTTGGTTTGGATGTTGATGATAAAGCGAAGAAGAACGCTGATGTAGAAAGTGATGTGGAATCTGGGGAGCTTGTTCCTGGGAAGGAGTATGAAGGTTTGGAAATAGATGGGCCAGAAGATGGCAAGACTTTAAAGGATGACAGAAGGCATGCAAAGAAGGGTAAGAAGGATAAAGGGAGTGATGCAAAGAGTCATGGCAAAAGTTCTAGGAAGATTAAACTTGGTCATGATTCAGATTCAGATCATGATGATAACAAAAAAAAAAAAAACAGAG] [+] EMBL CB967309 [AAGGACGCGGCGCGGCAGACACACAAAGCCACCACGTTGCTGCAAGGAAGGAGAAGCAGCTTGAGACGCTGAGGGCTGCTCTTGGTTTGGATGTTGATGATAAAGCGAAGAAGAACGCTGATGTAGAAAGTGATGTGGAATCTGGGGAGCTTGTTCCTGGGAAGGAGTATGAAGGTTTGGAAATAGATGGGCCAGAAGATGGCAAGACTTTAAAGGATGACAGAAGGCATGCAAAGAAGGGTAAGAAGGATAAAGGGAGTGATGCAAAGAGTCATGGCAAAAGTTCTAGGAAGATTAAACTTGGTCATGATTCAGATTCAGATCATGATGATAACAAAAAAAAAAAAAACAGAG] consensusID : consensus_7355#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 284 fasta sequence [AGGACGCGGCGCGGGGCGGCAGCCACTCCCGGGCAAAGGTTTTTCAGACACACAAAGCCACCACGTTGCTGCAAGGAAGGAGAAGCAGCTTGAGACGCTGAGGGCTGCTCTATGGTTTGGACTGTTGATGACTCAAGCGAAGCAAGAACGCTGACTGTAGAACAGTGACTGTGGAACTCTGGCGGAGCCTTGTTCCTGGCGAAGGAGCTATGAACGGTTCGGAAACTAGACTGGGCCACGAAGATGGCACAGACCTTTAACACGGACTGACACGAAGTGCATGC] [+] EMBL CB965989 [AGGACGCGGCGCGGGGCGGCAGCCACTCCCGGGCAAAGGTTTTTCAGACACACAAAGCCACCACGTTGCTGCAAGGAAGGAGAAGCAGCTTGAGACGCTGAGGGCTGCTCTATGGTTTGGACTGTTGATGACTCAAGCGAAGCAAGAACGCTGACTGTAGAACAGTGACTGTGGAACTCTGGCGGAGCCTTGTTCCTGGCGAAGGAGCTATGAACGGTTCGGAAACTAGACTGGGCCACGAAGATGGCACAGACCTTTAACACGGACTGACACGAAGTGCATGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7355#0 GAAGGACGCGGCGCGGGGCGGCAGCCACTCCCGGGCAAAGGTTTTTCAGACACACAAAGC 60 consensus_7355#1 -------------------------------AAGGACGCGGCGCGGCAGACACACAAAGC 29 consensus_7355#2 --AGGACGCGGCGCGGGGCGGCAGCCACTCCCGGGCAAAGGTTTTTCAGACACACAAAGC 58 ** ** ************** consensus_7355#0 CACCACGT-GCTGCAAGGAAGGAGAAGCAGCTTGAGACGCTGAGGGCTGCTCT-TGGTTT 118 consensus_7355#1 CACCACGTTGCTGCAAGGAAGGAGAAGCAGCTTGAGACGCTGAGGGCTGCTCT-TGGTTT 88 consensus_7355#2 CACCACGTTGCTGCAAGGAAGGAGAAGCAGCTTGAGACGCTGAGGGCTGCTCTATGGTTT 118 ******** ******************************************** ****** consensus_7355#0 GGA-TGTTGATGA-TAAAGCGAAG-AAGAACGCTGA-TGTAGAA-AGTGA-TGTGGAA-T 171 consensus_7355#1 GGA-TGTTGATGA-TAAAGCGAAG-AAGAACGCTGA-TGTAGAA-AGTGA-TGTGGAA-T 141 consensus_7355#2 GGACTGTTGATGACTCAAGCGAAGCAAGAACGCTGACTGTAGAACAGTGACTGTGGAACT 178 *** ********* * ******** *********** ******* ***** ******* * consensus_7355#0 CTGG-GGAGC-TTGTTCCTGG-GAAGGAG-TATGAA-GGTTTGGAAA-TAGA-TGGGCCA 224 consensus_7355#1 CTGG-GGAGC-TTGTTCCTGG-GAAGGAG-TATGAA-GGTTTGGAAA-TAGA-TGGGCCA 194 consensus_7355#2 CTGGCGGAGCCTTGTTCCTGGCGAAGGAGCTATGAACGGTTCGGAAACTAGACTGGGCCA 238 **** ***** ********** ******* ****** **** ***** **** ******* consensus_7355#0 -GAAGATGGCA-AGACTTTAAAGGATGACAGAAGGCATGCAAAGAAGGGTAAGAAGGATA 282 consensus_7355#1 -GAAGATGGCA-AGACTTTAAAGGATGACAGAAGGCATGCAAAGAAGGGTAAGAAGGATA 252 consensus_7355#2 CGAAGATGGCACAGACCTTTAACACGGACTGA---CACGAAGTGCATGC----------- 284 ********** **** ** ** *** ** ** * * * * * consensus_7355#0 AAGGGAGTGATGCAAAGAGTCATGGCAAAAGTTCTAGGAAGATTAAACTTGGTCATGATT 342 consensus_7355#1 AAGGGAGTGATGCAAAGAGTCATGGCAAAAGTTCTAGGAAGATTAAACTTGGTCATGATT 312 consensus_7355#2 ------------------------------------------------------------ consensus_7355#0 CAGATTCAGATCATGATGATAACAAAAAAAAAAAAAACAGAGCGGCCGCTC 393 consensus_7355#1 CAGATTCAGATCATGATGATAACAAAAAAAAAAAAAACAGAG--------- 354 consensus_7355#2 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||