These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7363#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 515 fasta sequence [TTGGAGAGGCGGCGGCGCGAAAAATCCGAAGCTTTCGCGG-GAGGAGCTAGGGTTTGTGTGTGTGGTTGGGCGCGCGGCGAGCGGCGG-GAGATGTCGGCGTACGACGAGGTGGAGATCGAGGACATGGAGTGGAACGCGGA-CTC-GGGGCGTACACGTACCCGTGCCCCTGCGGCGACCTGTTCCAGATCACGCTCGCCGACCTCCGCCTCGGGGAGGAGATCGCGCGGTGCCCCTCCTGCTCCCTCTTCCTCACCGTCGTCTACAACGAGGAGGACTTCGCCGACGCCAAGGAGCCCCCGCACAAGCCGGCCCCGCGCCCCGTCGCCGTCGCCTGAGGCGCAGGATGGAATCAGGCTTAACTAAAATGAGAAAACAAACGGGAGCATTTGTACTTCTAAGATGAGAAAGTAGTTATATCGACCTTTGGCTTTTGAATTCACTATGTACGGAGTTACCAAAAAAAAAAAACCACAACGTGTTGACGGGGCATTATGAATAACTATTGCTTGGAGATT] [+] EMBL AK068205 [TTGGAGAGGCGGCGGCGCGAAAAATCCGAAGCTTTCGCGG GAGGAGCTAGGGTTTGTGTGTGTGGTTGGGCGCGCGGCGAGCGGCGG GAGATGTCGGCGTACGACGAGGTGGAGATCGAGGACATGGAGTGGAACGCGGAGCTC GGGGCGTACACGTACCCGTGCCCCTGCGGCGACCTGTTCCAGATCACGCTCGCCGACCTCCGCCTCGGGGAGGAGATCGCGCGGTGCCCCTCCTGCTCCCTCTTCCTCACCGTCGTCTACAACGAGGAGGACTTCGCCGACGCCAAGGAGCCCCCGCACAAGCCGGCCCCGCGCCCCGTCGCCGTCGCCTGAGGCGCAGGATGGAATCAGGCTTAACTAAAATGAGAAAACAAACGGGAGCATTTGTACTTCTAAGATGAGAAAGTAGTTATATCGACCTTTGGCTTTTGAATTCACTATGTACGGAGTTACCAAAAAAAAAAAACCACAACGTGTTGACGGGGCATTATGAATAACTATTGCTTGGAGATT] [+] EMBL OSR01531A [ GCGCGAAAAATCCGAAGCTTTCGCGG GAGGAGCTAGGGTTTGTGTGTNTGGTTGGGCGCGCGGCGAGCGGCGG GAGATGTCGGCGTACGACGAGGTGGAGATCGAGGACATGGAGTGGAACGCGGA NTC GGGGCGTACACGTACCCGTGCCCCTGCGGCGACCTGTTCCAGATCACGCTCGCCGACCTCCGCCTCGGGGAGGAGATCGCGCGGTGCCCCTCCTGCTCCCTCTTCCTCACCGTCGTCTACAACGAGGAGGACTTCGCCGACGCCAAGGAGCCCCCGCACAAGCCGGCCCCGCGCCCCGTCGCCGTCGCCTGAGGCGCAGGATGGAATCAGGCTTAACTAAGATGAGAAAACAAACGGGAGCATTTGTACTTCTAAGATGAGAAAGTAGTTATATCGACCTTTNGCTTTTGAATTCACTATGT ] [+] EMBL OSC915 [ anAAATCCGAAGCTTTCGCGGNGAGGAGCTAGGGTTTGTGTGTGTGGTTGGGCGCGCGGC AGC GCGGNGAGATGTCGGCGTACGACGAGGTGGAGATCGAGGACATGGAGTNGAACGCGGA CTCTGGGGCGTACACGTACCCGTGCCCCTNCGGCGACCTGTTCCAGATCACGCTCGCCGACCTCCGCCTCGGGGAGGAGATCGCGCGGTGCCCCTCCTGCTCCCTCTTCCTCACCGTCGTCTACAACGAGGAGGAC ] consensusID : consensus_7363#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 507 fasta sequence [AAAAATCCGAAGCTTTCGCGGGAGGAGCTAGGGTTTGTGTGTGTGGTTGGGCGCNCGGCGAACGGCGGGAGATGTCGGCGTACGACGAGGTGGAGATCGAGGACATGGAGTGGAACGCGGAGCTCGGGGCGTACACGTACCCGTGCCCCTGCGGCGACCTGTTCCAGATCACGCTCGCCGACCTCCGCCTCGGGGAGGAGATCGCNCGGTGCCCCTCCTGCTCCCTCTTCCTCACCGTCGTNTACAACGAGGAGGACTTCGCCGACGCCAAGGAGCCCCCGCACAANCCGGCCCCGCGCCCCGTCGCCGTCGCCTGAGGCGGTGAGTTTTTTTTTTTTTTGGCGCAATTGGAATCCGTTTCCGGTGAAGCGTGCTCGTTTGTTAGGTTATAAGTTTGAATCGTTGCTGTGTAATTTGGAGTATTAATTAATCGATCTCCTGTATACCTGATTATGGATTCAATAAATAGTTCTGAAATTTTAGCTTTTGGATGAAAAAAAAAAAAAA] [+] EMBL AU163854 [AAAAATCCGAAGCTTTCGCGGGAGGAGCTAGGGTTTGTGTGTGTGGTTGGGCGCNCGGCGAACGGCGGGAGATGTCGGCGTACGACGAGGTGGAGATCGAGGACATGGAGTGGAACGCGGAGCTCGGGGCGTACACGTACCCGTGCCCCTGCGGCGACCTGTTCCAGATCACGCTCGCCGACCTCCGCCTCGGGGAGGAGATCGCNCGGTGCCCCTCCTGCTCCCTCTTCCTCACCGTCGTNTACAACGAGGAGGACTTCGCCGACGCCAAGGAGCCCCCGCACAANCCGGCCCCGCGCCCCGTCGCCGTCGCCTGAGGCGGTGAGTTTTTTTTTTTTTTGGCGCAATTGGAATCCGTTTCCGGTGAAGCGTGCTCGTTTGTTAGGTTATAAGTTTGAATCGTTGCTGTGTAATTTGGAGTATTAATTAATCGATCTCCTGTATACCTGATTATGGATTCAATAAATAGTTCTGAAATTTTAGCTTTTGGATGAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7363#0 TTGGAGAGGCGGCGGCGCGAAAAATCCGAAGCTTTCGCGGGAGGAGCTAGGGTTTGTGTG 60 consensus_7363#1 -------------------AAAAATCCGAAGCTTTCGCGGGAGGAGCTAGGGTTTGTGTG 41 ***************************************** consensus_7363#0 TGTGGTTGGGCGCGCGGCGAGCGGCGGGAGATGTCGGCGTACGACGAGGTGGAGATCGAG 120 consensus_7363#1 TGTGGTTGGGCGCNCGGCGAACGGCGGGAGATGTCGGCGTACGACGAGGTGGAGATCGAG 101 ************* ****** *************************************** consensus_7363#0 GACATGGAGTGGAACGCGGA-CTCGGGGCGTACACGTACCCGTGCCCCTGCGGCGACCTG 179 consensus_7363#1 GACATGGAGTGGAACGCGGAGCTCGGGGCGTACACGTACCCGTGCCCCTGCGGCGACCTG 161 ******************** *************************************** consensus_7363#0 TTCCAGATCACGCTCGCCGACCTCCGCCTCGGGGAGGAGATCGCGCGGTGCCCCTCCTGC 239 consensus_7363#1 TTCCAGATCACGCTCGCCGACCTCCGCCTCGGGGAGGAGATCGCNCGGTGCCCCTCCTGC 221 ******************************************** *************** consensus_7363#0 TCCCTCTTCCTCACCGTCGTCTACAACGAGGAGGACTTCGCCGACGCCAAGGAGCCCCCG 299 consensus_7363#1 TCCCTCTTCCTCACCGTCGTNTACAACGAGGAGGACTTCGCCGACGCCAAGGAGCCCCCG 281 ******************** *************************************** consensus_7363#0 CACAAGCCGGCCCCGCGCCCCGTCGCCGTCGCCTGAGGCGCAGGATGGAATCAGGCTTAA 359 consensus_7363#1 CACAANCCGGCCCCGCGCCCCGTCGCCGTCGCCTGAGGCGGTGAGTTTTTTTTTTTTTTG 341 ***** ********************************** * * * ** consensus_7363#0 CTAAAATGAGAAAACAAACGGGAGCATTTGTACTTCTAAGATGAGAAAGTAGTT-ATATC 418 consensus_7363#1 GCGCAATTGGAATCCGTTTCCGGTGAAGCGTGCTCGTTTGTTAGGTTATAAGTTTGAATC 401 *** *** * * * ** ** * * * * * **** *** consensus_7363#0 GAC-CTTTGGCTTTTGAATTCACTATGTACGGAGTTACCAAAAAAAAAAAACCACAACGT 477 consensus_7363#1 GTTGCTGTGTAATTTGGAGTATTAATTAATCGATCTCCTGTATACCTGATTATGGATTCA 461 * ** ** **** * * ** * ** * * * * * * consensus_7363#0 GTTGACGGGGCATTATGAATAACTATTGCTTGGAGATT-------- 515 consensus_7363#1 ATAAATAGTTCTGAAATTTTAGCTTTTGGATGAAAAAAAAAAAAAA 507 * * * * * ** ** *** ** * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||