Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7405 cluster # 7405       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7405#0 length = 817 sequences # 4  

consensusID : consensus_7405#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 817
fasta sequence
                              [TCTTTTTTTTGATTTTATTTTACAAAAACAGATTCAAGGACCTCAATGTAAGATTACAGGGACTCAAACGTAAATACAAAATTTATAGGGACTCAAATGTAAAAGTTCAAACCCAAAATTAGAACTATACAAAAATGGAATGTTGAATTTATGCCGGTTCCGT-TTTTCCAAACAGATCTCGAAACCGACACCAAAC-AAAAATTCACC-AAGGTGTTTGATACAA-CTCGGAACCTT-GTGATGTACGTGATTTGGAGGAGGGAGTCGAACTCAAGGAAGGAATGCCGCATGCACAGGTGGTGGGACTCGTGAAAAAGTCTGAAAGAAGGAAACTGATTCCTTATTACCTTTTCTACGTGGCCCCGAAATAGAAACCAAACCAATCTAATCTCTACCTTCCATCTTCCTCACGCGCATCAGCAGAACAACAGGAGCACGGGACAGTGCGCAACCACAGACCAAAACACTAGATGCAACTCCACAACACCAAAACCGACCGACAGAAAGTTCTGAAAACTAGAAAAATGGAACACTGGCGGAAAGACGATTCCGTTTTCGTAGGTCCCGACGACAACAAAGCACACGACGACGACGATGACAGTGGTACAAAACGTGACCAGAACTCGAAACTCTAAACGAACTAAACGCTATGACCAGCAACACGACGTGACGATGCAACACAAAATTCAACAAAGCAAAAACTGAAAAGAACAATGCAATGGCACAAATGTGGCTAGGTAATGTATGATTTTTTTTTTCGGGCTATTTTCTGGTTATAGGTAAATGAAAACTCACCGAGCAACGAAAGCTCTGATACCAC]

[+] EMBL CB633476             [TCTTTTTTTTGATTTTATTTTACAAAAACAGATTCAAGGACCTCAATGTAAGATTACAGGGACTCAAACGTAAATACAAAATTTATAGGGACTCAAATGTAAAAGTTCAAACCCAAAATTAGAACTATACAAAAATGGAATGTTGAATTTATGCCGGTTCCGT TTTTCCAAACAGATCTCGAAACCGACACCAAAC AAAAATTCACC AAGGTGTTTGATACAA CTCGGAACCTT GTGATGTACGTGATTTGGAGGAGGGAGTCGAACTCAAGGAAGGAATGCCGCATGCACAGGTGGTGGGACTCGTGAAAAAGTCTGAAAGAAGGAAACTGATTCCTTATTACCTTTTCTACGTGGCCCCGAAATAGAAACCAAACCAATCTAATCTCTACCTTCCATCTTCCTCACGCGCATCAGCAGAACAACAGGAGCACGGGACAGTGCGCAACCACAGACCAAAACACTAGATGCAACTCCACAACACCAAAACCGACCGACAGAAAGTTCTGAAAACTAGAAAAATGGAACACTGGCGGAAAGACGATTCCGTTTTCGTAGGTCCCGACGACAACAAAGCACACGACGACGACGATGACAGTGGTACAAAACGTGACCAGAACTCGAAACTCTAAACGAACTAAACGCTATGACCAGCAACACGACGTGACGATGCAACACAAAATTCAACAAAGCAAAAACTGAAAAGAACAATGCAATGGCACAAATGTGGCTAGGTAATGTATGATTTTTTTTTTCGGGCTATTTTCTGGTTATAGGTAAATGAAAACTCACCGAGCAACGAAAGCTCTGATACCAC]
[+] EMBL CB635542             [TCTTTTTTTTGATTTGATTTTACAAAAACAGATTCAAGGACCTCCATGTAAAATTACAGGGACTCAAACGTAAATACAAAATTTATAGGGACTCAAATGTAAAAGTTCAAACCCAAAATTATAACTATACAAAAATGGAATGTTGAATTTATGCCGGATCCGT TTTTCCAAACAGATCTCGAAACCGACACCAAAC AAAAATTCACC AAGGTGTTTGATACAA CTCAGAACCTT GTGATGTACGTGATTTGGAGGAGGGAGTCGAACTCAAGGAAGGAATGCCGCATGCACAGGTGGTGGGACTCGTGAAAAAGTCTGAAAGAAGGAAACTGATTCCTTATTACCTTTTCTACGTGGCCCCGAAATATAAACCAAACCAATCTAATCTCTACCTTCCATCTTCCTCACGCGCATCAGCAGAACAACAGGAGCACGGGACAGTGCGCAACCACAGACCAAAACACTATATGCAACTCCACAACACCAAAACCGACCGACAGAAAGTTCTGAAAACTACAAAAATGGAACACTGGCGGAAAGACGATTCCGTTTTCATACGTCCCGACGACAACAAAGCACACGACGACAACAATGACAGTGGTACAAAACGTGACCAGAACTCGAAACTCTAAACGAACTAAACGCTATGACCAGCAACACGACGTGACGATGCAACACAAAATTCAACAAAGCAAAAACTGAAAACAACAATGCAATGGCACAAATGTGGCTAGGTAATGTATGAT                                                                       ]
[+] EMBL CB633358             [                   TTACAAAAACAGATTCAACGACCTCAATGTAAGATTACAGGGACTCAAACGTAAATACAAAATTTATAGGGACTCAAATGTAAAAGTTCAAACCCAAAATTAGAACTATACAAAAATGGAATGTTGAATTTATGCCGGTTCCGT TTTTCCAAACAGATCTCGAAACCGACACCAAAC AAAAATTCACC AAGGTGTTTGATACAA CTCGGAACCTT GTGATGTACGTGATTTGGAGGAGGGAGTCGAACTCAAGGAAGGAATGCCGCATGCACAGGTGGTGGGACTCGTGAAAAAGTCTGAAAGAAGGAAACTGATTCCTTATTACCTTTTCTACGTGGCCCCGAAATAGAAACCAAACCAATCTAATCTCTACCTTCCATCTTCCTCACGCGCATCAGCAGAACAACAGGAGCACGGGACAGTGCGCAACCACAGACCAAAACACTAGATGCAACTCCACAACACCAAAACCGACCGACAGAAAGTTCTGAAAACTAGAAAAATGGAACACTGGCGGAAAGACGATTCCGTTTTCGTAGGTCCCGACGACAACAAAGCACACGACGACGACGATGACAGTGGTACAAAACGTGACCAGAACTCGAAACTCTAAACGAACTAAACGCTATGACCAGCAACACGACGTGACGATGCAACACAAAATTCAACAAAGCAAAAACTGAAAAGAACAATGCAATGGCACAAATGTGGCTAGGTAATGTATGATTTTTTTTTTCGGGCTATTTTCTGGTTATAGGTA                                      ]
[-] EMBL BI808070             [                                                                                           CTCAAATGTAAAAGTTCAAACCCAAAATTAGAACTATACAAAAATGGACTGTTGAATTTATGCCGGTTCCGTATTTTCCAAACAGATCTCGAAA CGACACCAAACAAAAAATTCACCAAAGGTGTTTGATACAACCTCGGAACCTTGGTGATGTACGTGA TTGGAGGAGGGAGTCGAACTCAAGGCAGGAATGCCcgc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]


>consensus_7405#0 TCTTTTTTTTGATTTTATTTTACAAAAACAGATTCAAGGACCTCAATGTAAGATTACAGG GACTCAAACGTAAATACAAAATTTATAGGGACTCAAATGTAAAAGTTCAAACCCAAAATT AGAACTATACAAAAATGGAATGTTGAATTTATGCCGGTTCCGTTTTTCCAAACAGATCTC GAAACCGACACCAAACAAAAATTCACCAAGGTGTTTGATACAACTCGGAACCTTGTGATG TACGTGATTTGGAGGAGGGAGTCGAACTCAAGGAAGGAATGCCGCATGCACAGGTGGTGG GACTCGTGAAAAAGTCTGAAAGAAGGAAACTGATTCCTTATTACCTTTTCTACGTGGCCC CGAAATAGAAACCAAACCAATCTAATCTCTACCTTCCATCTTCCTCACGCGCATCAGCAG AACAACAGGAGCACGGGACAGTGCGCAACCACAGACCAAAACACTAGATGCAACTCCACA ACACCAAAACCGACCGACAGAAAGTTCTGAAAACTAGAAAAATGGAACACTGGCGGAAAG ACGATTCCGTTTTCGTAGGTCCCGACGACAACAAAGCACACGACGACGACGATGACAGTG GTACAAAACGTGACCAGAACTCGAAACTCTAAACGAACTAAACGCTATGACCAGCAACAC GACGTGACGATGCAACACAAAATTCAACAAAGCAAAAACTGAAAAGAACAATGCAATGGC ACAAATGTGGCTAGGTAATGTATGATTTTTTTTTTCGGGCTATTTTCTGGTTATAGGTAA ATGAAAACTCACCGAGCAACGAAAGCTCTGATACCAC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)