These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7407#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1523 fasta sequence [ATTTCTACCGCCGACGCGGCCGCGAGCCACGGCGAGCAGCGGCGGAGCAGCGACGCGGCGGCCATGGAGAGGACCGCGGCGGAGGCAGCGGCTGGGGGGAAGGGGGCGTGGAGGGACGGCGCCGTGACGTACCTCCACCTCCTCTTCTACATCGCCATCTCCGGCGGCCAGATCTTCTTCAACAAGTGGGTTTTATCCTCAAAAGAGATCAACTTCCCCTATCCTGTGGCATTAACTCTGCTGCACATGGTTTTCTCATCTGTAGTGTGCTTCGCAATTACAAAGATCTTCAAGATTGTAAAGATTGAGGAGGGAATGACTACCGATATATATATTAGTTCAGTCATTCCAATCGGAGCAATGTTTGCAATGACACTCTGGCTAGGGAACAGTGCTTACCTCTATATATCTGTTGCATTTGCACAGATGCTGAAGGCGATAATGCCAGTAGCTGTGTTTCTCCTTGGAGCTGCCTTTGGCCTTGAAGAAATGAGTTGTAAAATGCTTGCTATCATGTCTGTCATCAGTGTTGGGGTTATTGTGGCCTCTGTTGGTGAAATTACAATCAGCTGGGTTGGTGTGGTTTACCAGATGGGTGGAGTTGTCGCAGAAGCCCTTAGACTGATCTTCATTGAGATTTTTCTGAAGAAAAAAGGTGTTAGGCTTAATTTGATTTCCATGATGTACTATGTTAGCCCTTGCAGTGCTTTGTGTCTCTTTATTCCCTGGTTGTTCTTAGAGAAGCCCAAGATGGATGAAAGTGCCTCATGGAACTTCCCACCATTCACATTGTTCTTAAACTGCCTGTGCACTTTCATCCTCAATATGTCAGTTTTCCTTGTCATTTCCAGAACTAGTGCACTGACAGCTCGTGTTACGGGAGTTGTGAGGGATTGGTCCGTGGTGTTGCTGTCAGCTGCTATCTTTGCTGATACACAGCTTACCTTTATAAATATAATTGGCTATGCCATAGCAATAGCAGGTGTGGTTGCATATAACAATCGTAAGCTCAAACCGAAACCCCAAGGGAATGAGCAGCAGAGTGCTGACAGCAAAGCCAACCCAGGAAGCCCGCAAGATGTTGAGACATCGATCTCGACTAAAGAAGCTTCATAGCACTGAAAGCTGTGAGGTTTTGAACAGATTTTTGAAGAAGGAGAAATGAGCTCTCGCTTTTCCTTTGAGTTGGTCAGCTCTCCTTGGATACATTTTTTGTTCTCTTCCTACTTATCAGCAGGGAAGACATTTTGTACAACAATGCTTAAAGAAGCGAAGTGTATACGTTAGCGTACCGTTTTGTTCGCTCGAAAAAGTCAGAGCACGCCATACATATCAACTAGGTTCTGTAGATGTATTTTGTTGTCATTTGAACTTGCTGTAGCAATTTATCAGGTTCTTCACAAATATGCAACCTGATTCTTATACAATGTTTTCCTTACCTAGGAGGTCCTGCCAATGGAGGACTGCCTGTGTCAAGTATGTGCAAAATTTTCAAAGATCAATAGTTTGATATGTAACCTCCA] [+] EMBL CB675418 [ATTTCTACCGCCGACGCGGCCGCGAGCCACGGCGAGCAGCGGCGGAGCAGCGACGCGGCGGCCATGGAGAGGACCGCGGCGGAGGCAGCGGCTGGGGGGAAGGGGGCGTGGAGGGACGGCGCCGTGACGTACCTCCACCTCCTCTTCTACATCGCCATCTCCGGCGGCCAGATCTTCTTCAACAAGTGGGTTTTATCCTCAAAAGAGATCAACTTCCCCTATCCTGTGGCATTAACTCTGCTGCACATGGTTTTCTCATCTGTAGTGTGCTTCGCAATTACAAAGATCTTCAAGATTGTAAAGATTGAGGAGGGAATGACTACCGATATATATATTAGTTCAGTCATTCCAATCGGAGCAATGTTTGCAATGACACTCTGGCTAGGGAACAGTGCTTACCTCTATATATCTGTTGCATTTGCACAGATGCTGAAGGCGATAATGCCAGTAGCTGTGTTTCTCCTTGGAGCTGCCTTTGGCCTTGAAGAAATGAGTTGTAAAATGCTTGCTATCATGTCTGTCATCAGTGTTGGGGTTATTGTGGCCTCTGTTGGTGAAATTACAATCAGCTGGGTTGGTGTGGTTTACCAGATGGGTGGAGTTGTCGCAGAAGCCCTTAGACTGATCTTCATTGAGATTTTTCTGAAGAAAAAAGGTGTTAGGCTTAATTTGATTTCCATGATGTACTATGTTAGCCCTTGCAGTGCTTTGTGTCTCTTTATTCCCTGGTTGTTCTTAGAGAAGCCCAAGATGGATGAAAGTGCCTCATGGAACTTCCCACC ] [+] EMBL AK108618 [ CGGAGCAGCGACGCGGCGGCCATGGAGAGGACCGCGGCGGAGGCAGCGGCTGGGGGGAAGGGGGCGTGGAGGGACGGCGCCGTGACGTACCTCCACCTCCTCTTCTACATCGCCATCTCCGGCGGCCAGATCTTCTTCAACAAGTGGGTTTTATCCTCAAAAGAGATCAACTTCCCCTATCCTGTGGCATTAACTCTGCTGCACATGGTTTTCTCATCTGTAGTGTGCTTCGCAATTACAAAGATCTTCAAGATTGTAAAGATTGAGGAGGGAATGACTACCGATATATATATTAGTTCAGTCATTCCAATCGGAGCAATGTTTGCAATGACACTCTGGCTAGGGAACAGTGCTTACCTCTATATATCTGTTGCATTTGCACAGATGCTGAAGGCGATAATGCCAGTAGCTGTGTTTCTCCTTGGAGCTGCCTTTGGCCTTGAAGAAATGAGTTGTAAAATGCTTGCTATCATGTCTGTCATCAGTGTTGGGGTTATTGTGGCCTCTGTTGGTGAAATTACAATCAGCTGGGTTGGTGTGGTTTACCAGATGGGTGGAGTTGTCGCAGAAGCCCTTAGACTGATCTTCATTGAGATTTTTCTGAAGAAAAAAGGTGTTAGGCTTAATTTGATTTCCATGATGTACTATGTTAGCCCTTGCAGTGCTTTGTGTCTCTTTATTCCCTGGTTGTTCTTAGAGAAGCCCAAGATGGATGAAAGTGCCTCATGGAACTTCCCACCATTCACATTGTTCTTAAACTGCCTGTGCACTTTCATCCTCAATATGTCAGTTTTCCTTGTCATTTCCAGAACTAGTGCACTGACAGCTCGTGTTACGGGAGTTGTGAGGGATTGGTCCGTGGTGTTGCTGTCAGCTGCTATCTTTGCTGATACACAGCTTACCTTTATAAATATAATTGGCTATGCCATAGCAATAGCAGGTGTGGTTGCATATAACAATCGTAAGCTCAAACCGAAACCCCAAGGGAATGAGCAGCAGAGTGCTGACAGCAAAGCCAACCCAGGAAGCCCGCAAGATGTTGAGACATCGATCTCGACTAAAGAAGCTTCATAGCACTGAAAGCTGTGAGGTTTTGAACAGATTTTTGAAGAAGGAGAAATGAGCTCTCGCTTTTCCTTTGAGTTGGTCAGCTCTCCTTGGATACATTTTTTGTTCTCTTCCTACTTATCAGCAGGGAAGACATTTTGTACAACAATGCTTAAAGAAGCGAAGTGTATACGTTAGCGTACCGTTTTGTTCGCTCGAAAAAGTCAGAGCACGCCATACATATCAACTAGGTTCTGTAGATGTATTTTGTTGTCATTTGAACTTGCTGTAGCAATTTATCAGGTTCTTCACAAATATGCAACCTGATTCTTATACAATGTTTTCCTTACCTAGGAGGTCCTGCCAATGGAGGACTGCCTGTGTCAAGTATGTGCAAAATTTTCAAAGATCAATAGTTTGATATGTAACCTCCA] [-] EMBL CB675419 [ TAGACTGATCTTCATTGAGATTTTTCTGAAGAAAAAAGGTGTTAGGCTTAATTTGATTTCCATGATGTACTATGTTAGCCCTTGCAGTGCTTTGTGTCTCTTTATTCCCTGGTTGTTCTTAGAGAAGCCCAAGATGGATGAAAGTGCCTCATGGAACTTCCCACCATTCACATTGTTCTTAAACTGCCTGTGCACTTTCATCCTCAATATGTCAGTTTTCCTTGTCATTTCCAGAACTAGTGCACTGACAGCTCGTGTTACGGGAGTTGTGAGGGATTGGTCCGTGGTGTTGCTGTCAGCTGCTATCTTTGCTGATACACAGCTTACCTTTATAAATATAATTGGCTATGCCATAGCAATAGCAGGTGTGGTTGCATATAACAATCGTAAGCTCAAACCGAAACCCCAAGGGAATGAGCAGCAGAGTGCTGACAGCAAAGCCAACCCAGGAAGCCCGCAAGATGTTGAGACATCGATCTCGACTAAAGAAGCTTCATAGCACTGAAAGCTGTGAGGTTTTGAACAGATTTTTGAAGAAGGAGAAATGAGCTCTCGCTTTTCCTTTGAGTTGGTCAGCTCTCCTTGGATACATTTTTTGTTCTCTTCCTACTTATCAGCAGGGAAGACATTTTGTACAACAATGCTTAAAGAAGCGAAGTGTATACGTTAGCGTACCGTTTTGTTCGCTCGAAAAAGTCAGAGCACGCCATACATATCAACTAGGTTCTGTAGATGTATTTTGTTGTCATTTGAACTTGCTGTAGCAATTTATCAGGTTCTTCAC ] consensusID : consensus_7407#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [TTCTACCGCCGACGCGGCCGCCAGCCACGGGGAGCAGCGGCGGAGGAGCAGCAGCGACGCCTACGCGGCGGCCATGGAGAGGACGCCGGCGGCAGCGGCCTCGGCGGGGGGCAAGGGGGCGTGGAGGGACGGCGCCGAGACGTACCTCCACCTCCTCTTCTACATCGCCATCTCCGGCGGCCAGATCTTCTTCAACAAGTGGGTTTTATCCTCAAAAGAGATCAACTTCCCATATCCTGTGGCATTAACTCTGCTACACATGGTTTTCTCATCTGTAGTGTGCTTCGCAATTACAAAGATCTTCAAGATTGTAAAGATTGAGGAGGGAATGACTACCGATATATATATTAGCTCAGTCATTCCAATCGGAGCAATGCTTGCAATGACACTCTGGCTAGGGAACAGTGCTTACCTCTATATATCTGTTGCATTTGCACAGATGCTGAAAGCAATAATGCCCGTAGCTGTGTTTCTCCTTGGAGCTGCCTTTGGGCTCGAAGAAATGAGTTGTACAATGCTTGCTATCATGTCTGTCATCAGTGGTGGGGCTATTGTGGCCTCTGCTGCTGAATTACAATCAGCTGGGCTGGCGTGAGTTACCAGAGGGGGGCAG] [+] EMBL CA758414 [TTCTACCGCCGACGCGGCCGCCAGCCACGGGGAGCAGCGGCGGAGGAGCAGCAGCGACGCCTACGCGGCGGCCATGGAGAGGACGCCGGCGGCAGCGGCCTCGGCGGGGGGCAAGGGGGCGTGGAGGGACGGCGCCGAGACGTACCTCCACCTCCTCTTCTACATCGCCATCTCCGGCGGCCAGATCTTCTTCAACAAGTGGGTTTTATCCTCAAAAGAGATCAACTTCCCATATCCTGTGGCATTAACTCTGCTACACATGGTTTTCTCATCTGTAGTGTGCTTCGCAATTACAAAGATCTTCAAGATTGTAAAGATTGAGGAGGGAATGACTACCGATATATATATTAGCTCAGTCATTCCAATCGGAGCAATGCTTGCAATGACACTCTGGCTAGGGAACAGTGCTTACCTCTATATATCTGTTGCATTTGCACAGATGCTGAAAGCAATAATGCCCGTAGCTGTGTTTCTCCTTGGAGCTGCCTTTGGGCTCGAAGAAATGAGTTGTACAATGCTTGCTATCATGTCTGTCATCAGTGGTGGGGCTATTGTGGCCTCTGCTGCTGAATTACAATCAGCTGGGCTGGCGTGAGTTACCAGAGGGGGGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7407#0 ATTTCTACCGCCGACGCGGCCGCGAGCCACGGCGAGCAGCGGCGGAGCAGCG-------- 52 consensus_7407#1 --TTCTACCGCCGACGCGGCCGCCAGCCACGGGGAGCAGCGGCGGAGGAGCAGCAGCGAC 58 ********************* ******** ************** *** consensus_7407#0 ----ACGCGGCGGCCATGGAGAGGACCGCGGCGGAGGCAGC---GGCTGGGGGGAAGGGG 105 consensus_7407#1 GCCTACGCGGCGGCCATGGAGAGGACGCCGGCGGCAGCGGCCTCGGCGGGGGGCAAGGGG 118 ********************** ****** ** ** *** ***** ****** consensus_7407#0 GCGTGGAGGGACGGCGCCGTGACGTACCTCCACCTCCTCTTCTACATCGCCATCTCCGGC 165 consensus_7407#1 GCGTGGAGGGACGGCGCCGAGACGTACCTCCACCTCCTCTTCTACATCGCCATCTCCGGC 178 ******************* **************************************** consensus_7407#0 GGCCAGATCTTCTTCAACAAGTGGGTTTTATCCTCAAAAGAGATCAACTTCCCCTATCCT 225 consensus_7407#1 GGCCAGATCTTCTTCAACAAGTGGGTTTTATCCTCAAAAGAGATCAACTTCCCATATCCT 238 ***************************************************** ****** consensus_7407#0 GTGGCATTAACTCTGCTGCACATGGTTTTCTCATCTGTAGTGTGCTTCGCAATTACAAAG 285 consensus_7407#1 GTGGCATTAACTCTGCTACACATGGTTTTCTCATCTGTAGTGTGCTTCGCAATTACAAAG 298 ***************** ****************************************** consensus_7407#0 ATCTTCAAGATTGTAAAGATTGAGGAGGGAATGACTACCGATATATATATTAGTTCAGTC 345 consensus_7407#1 ATCTTCAAGATTGTAAAGATTGAGGAGGGAATGACTACCGATATATATATTAGCTCAGTC 358 ***************************************************** ****** consensus_7407#0 ATTCCAATCGGAGCAATGTTTGCAATGACACTCTGGCTAGGGAACAGTGCTTACCTCTAT 405 consensus_7407#1 ATTCCAATCGGAGCAATGCTTGCAATGACACTCTGGCTAGGGAACAGTGCTTACCTCTAT 418 ****************** ***************************************** consensus_7407#0 ATATCTGTTGCATTTGCACAGATGCTGAAGGCGATAATGCCAGTAGCTGTGTTTCTCCTT 465 consensus_7407#1 ATATCTGTTGCATTTGCACAGATGCTGAAAGCAATAATGCCCGTAGCTGTGTTTCTCCTT 478 ***************************** ** ******** ****************** consensus_7407#0 GGAGCTGCCTTTGGCCTTGAAGAAATGAGTTGTAAAATGCTTGCTATCATGTCTGTCATC 525 consensus_7407#1 GGAGCTGCCTTTGGGCTCGAAGAAATGAGTTGTACAATGCTTGCTATCATGTCTGTCATC 538 ************** ** **************** ************************* consensus_7407#0 AGTGTTGGGGTTATTGTGGCCTCTGTTGGTGAAATTACAATCAGCTGGGTTGGTGTGGTT 585 consensus_7407#1 AGTGGTGGGGCTATTGTGGCCTCTGCTGCTGAA-TTACAATCAGCTGGGCTGGCGTGAGT 597 **** ***** ************** ** **** *************** *** *** * consensus_7407#0 TACCAGATGGGTGGAGTTGTCGCAGAAGCCCTTAGACTGATCTTCATTGAGATTTTTCTG 645 consensus_7407#1 TACCAGAGGGGGGCAG-------------------------------------------- 613 ******* *** * ** consensus_7407#0 AAGAAAAAAGGTGTTAGGCTTAATTTGATTTCCATGATGTACTATGTTAGCCCTTGCAGT 705 consensus_7407#1 ------------------------------------------------------------ consensus_7407#0 GCTTTGTGTCTCTTTATTCCCTGGTTGTTCTTAGAGAAGCCCAAGATGGATGAAAGTGCC 765 consensus_7407#1 ------------------------------------------------------------ consensus_7407#0 TCATGGAACTTCCCACCATTCACATTGTTCTTAAACTGCCTGTGCACTTTCATCCTCAAT 825 consensus_7407#1 ------------------------------------------------------------ consensus_7407#0 ATGTCAGTTTTCCTTGTCATTTCCAGAACTAGTGCACTGACAGCTCGTGTTACGGGAGTT 885 consensus_7407#1 ------------------------------------------------------------ consensus_7407#0 GTGAGGGATTGGTCCGTGGTGTTGCTGTCAGCTGCTATCTTTGCTGATACACAGCTTACC 945 consensus_7407#1 ------------------------------------------------------------ consensus_7407#0 TTTATAAATATAATTGGCTATGCCATAGCAATAGCAGGTGTGGTTGCATATAACAATCGT 1005 consensus_7407#1 ------------------------------------------------------------ consensus_7407#0 AAGCTCAAACCGAAACCCCAAGGGAATGAGCAGCAGAGTGCTGACAGCAAAGCCAACCCA 1065 consensus_7407#1 ------------------------------------------------------------ consensus_7407#0 GGAAGCCCGCAAGATGTTGAGACATCGATCTCGACTAAAGAAGCTTCATAGCACTGAAAG 1125 consensus_7407#1 ------------------------------------------------------------ consensus_7407#0 CTGTGAGGTTTTGAACAGATTTTTGAAGAAGGAGAAATGAGCTCTCGCTTTTCCTTTGAG 1185 consensus_7407#1 ------------------------------------------------------------ consensus_7407#0 TTGGTCAGCTCTCCTTGGATACATTTTTTGTTCTCTTCCTACTTATCAGCAGGGAAGACA 1245 consensus_7407#1 ------------------------------------------------------------ consensus_7407#0 TTTTGTACAACAATGCTTAAAGAAGCGAAGTGTATACGTTAGCGTACCGTTTTGTTCGCT 1305 consensus_7407#1 ------------------------------------------------------------ consensus_7407#0 CGAAAAAGTCAGAGCACGCCATACATATCAACTAGGTTCTGTAGATGTATTTTGTTGTCA 1365 consensus_7407#1 ------------------------------------------------------------ consensus_7407#0 TTTGAACTTGCTGTAGCAATTTATCAGGTTCTTCACAAATATGCAACCTGATTCTTATAC 1425 consensus_7407#1 ------------------------------------------------------------ consensus_7407#0 AATGTTTTCCTTACCTAGGAGGTCCTGCCAATGGAGGACTGCCTGTGTCAAGTATGTGCA 1485 consensus_7407#1 ------------------------------------------------------------ consensus_7407#0 AAATTTTCAAAGATCAATAGTTTGATATGTAACCTCCA 1523 consensus_7407#1 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||