These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7423#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2215 fasta sequence [CGATTCCCCAATCCATCCATCCAGTCCCCCCCCTCGCTGGAATCGTGGGTGTGGGGTGGGTTCTGAGGATTCGAGGCGGCAGGTCGCCTCCGAGGATTCCCCCTTCGAGTTCGAGGTCCCTTGTTTTCTTGCGAGGATTGGGGGCCTGATTTAGAGGGCGTTGTCGGTCGGTCTCGGTTTTGCATTTCTTCCAGCTCGGGACCGACGACCCTGGGCGATTCCCGAGGAGGAGTGAGTTCCACTCTGATTTCTTGGTGTAGCGCGGAAAGTTGGCTTTTTTGGGTCGAATTGTTGGTAGTCTCGCTGCAATTGGAAAATTTTGGGCTTTCTGAACCTTGGGGTTAAAGATCGTCGGCATGCCTAAAGTCGGGAGCTTGATCCTGTCTGGTGATCATTCTTGAATCGAATGCGGTTTGGGCGGCCTCGTGGATTGGGAAATTTCAGGGTGAAGTCTTCGATTCGAGGCCTTCCCGTGCACGCTAAGAGAGGAGATCCTCAGCTTCGAGCATCCATGGGGTTCCTCAGCCTTGTGGGCAACTCATTTGGGTGCTCGGCTTCCGGCGAGCGGCTCGTCTCGGCGGCCCGCGACGGCGACCTGCAGGAGGCGCGCGCGCTGCTCGAGTACAACCCGCGGCTCGCCCGGTACTCCACTTTCGGCGGCCGCAACTCGCCGCTGCACTACGCCGCCGCGCAGGGTCACCATGAGATTGTTTCTCTGTTGCTCGAATCCGGCGTCGAGATCAACCTCAGGAATTACAGGGGCCAGACTGCTTTAATGCAAGCCTGTCAATATGGCCACTGGGAGGTTGTTCAGACACTGATGCTTTTCAATGCAAATGTTCATAGGACAGATTATTTGAATGGCGGTAGTGCTCTCCATTTTGCTGCACTACATGGTCATGCCCGGTGCCTTCGTCTTGTGCTTGCGGATTATGTTCCCAGCATGCCAAACTTCTGGAACTCGATGAAGGACAGCCTATCTGAAGAAGGTCCATCTGCTGATCTTGATGAAGATGGTTTGTTCAAGATGGTAAATCAGAAGGCGGATGGAGGACTGACTCCGCTTCATATGGCAGCGTTAAATGGGCATGTAGAGTGTGTGCAATTGTTACTGGACTTGGGAGCATCTGTTATTGAGGCCACTATTGAAGATGGAACAACTATTGACTTAATAGGAGCTGGTAGCACCCCGCTTCATTATGCTGCATGTGGTGGGAATGCTGTCTGTTGTCAACTTCTTATTGCTCGAGGAGCTAGCCTTTCTGCACAGAATGCTAGCGGCTGGACCCCGTTGATGGTAGCTCGCTCATGGCATAGGAACTCTCTTGAGGAAATTCTTAGCAAAGAACCAGAGAGTCGAATACGCACTGTTCCTTCTCCATATTTGTGCCTCCCGCTTATGAGTATCATGAGCATTGCCAGGGAATTTGGCTGGAGGTACCTAAACCAATCACCTGTATGTATTGACCCATGTGCTGTCTGCTTAGAAGGAAGCTGCTCTGTTGCTGCAGAAGGATGCAAACATGAATTCTGCACGAGATGTGCTTTATACCTTTGCTCAACCAGTTACACATCAGTGAGCCCAGCAGGTGCCATACCATGCCCTCTCTGTCGACACCCAATCATCGCTTTCACTGCGCTTCCTGGGACAAGCCCAATAAGAGAGCTCCCAAGAAACAGTCTTTCATTGTCATTTTGCACCACATGCCCAGCTGTGAACTCCGATTCTACTCCCTCAATCGCCAGCCATCTGTACCGGACTGAATTCCAGTGTGCACGCATGCCACCTATGGGTTCATCCTCCTTCCGTTCCTTGAGCTGCCAGAGGTTGCCGGCGATGAAGCTTAACCCGTCGTTTTGTATGGGTGCTATGGATACAAATCCCTGCCTAATAAGATGCTCAAGGTTCGGACCTAGCTTTCGTCGGTCGGCTTCCCAAGGAGAAAGTAGCAGGAGAGCATGGCCTCTAACCTTTGATCCAATTGCTGCCACTGGTAGCTGATACCTGATATTTCCTCAGTTTTGTGCCCATTTTGAGGTTTACCATGTATATTCATTGGTTGCATTGGTCTGGTTTTTGCCGATGTGAGATGAACTTGCTGGTCCCAATTCCTTGTTGATATCAGTAGCAGCATGTAACTACTCCTTTCTCTTGTCTGTAAATAACCTTTGTATTGCTGTGTATTGTCCGGAAATGAAGAAATGAAATGCGGAT] [+] EMBL AK120632 [CGATTCCCCAATCCATCCATCCAGTCCCCCCCCTCGCTGGAATCGTGGGTGTGGGGTGGGTTCTGAGGATTCGAGGCGGCAGGTCGCCTCCGAGGATTCCCCCTTCGAGTTCGAGGTCCCTTGTTTTCTTGCGAGGATTGGGGGCCTGATTTAGAGGGCGTTGTCGGTCGGTCTCGGTTTTGCATTTCTTCCAGCTCGGGACCGACGACCCTGGGCGATTCCCGAGGAGGAGTGAGTTCCACTCTGATTTCTTGGTGTAGCGCGGAAAGTTGGCTTTTTTGGGTCGAATTGTTGGTAGTCTCGCTGCAATTGGAAAATTTTGGGCTTTCTGAACCTTGGGGTTAAAGATCGTCGGCATGCCTAAAGTCGGGAGCTTGATCCTGTCTGGTGATCATTCTTGAATCGAATGCGGTTTGGGCGGCCTCGTGGATTGGGAAATTTCAGGGTGAAGTCTTCGATTCGAGGCCTTCCCGTGCACGCTAAGAGAGGAGATCCTCAGCTTCGAGCATCCATGGGGTTCCTCAGCCTTGTGGGCAACTCATTTGGGTGCTCGGCTTCCGGCGAGCGGCTCGTCTCGGCGGCCCGCGACGGCGACCTGCAGGAGGCGCGCGCGCTGCTCGAGTACAACCCGCGGCTCGCCCGGTACTCCACTTTCGGCGGCCGCAACTCGCCGCTGCACTACGCCGCCGCGCAGGGTCACCATGAGATTGTTTCTCTGTTGCTCGAATCCGGCGTCGAGATCAACCTCAGGAATTACAGGGGCCAGACTGCTTTAATGCAAGCCTGTCAATATGGCCACTGGGAGGTTGTTCAGACACTGATGCTTTTCAATGCAAATGTTCATAGGACAGATTATTTGAATGGCGGTAGTGCTCTCCATTTTGCTGCACTACATGGTCATGCCCGGTGCCTTCGTCTTGTGCTTGCGGATTATGTTCCCAGCATGCCAAACTTCTGGAACTCGATGAAGGACAGCCTATCTGAAGAAGGTCCATCTGCTGATCTTGATGAAGATGGTTTGTTCAAGATGGTAAATCAGAAGGCGGATGGAGGACTGACTCCGCTTCATATGGCAGCGTTAAATGGGCATGTAGAGTGTGTGCAATTGTTACTGGACTTGGGAGCATCTGTTATTGAGGCCACTATTGAAGATGGAACAACTATTGACTTAATAGGAGCTGGTAGCACCCCGCTTCATTATGCTGCATGTGGTGGGAATGCTGTCTGTTGTCAACTTCTTATTGCTCGAGGAGCTAGCCTTTCTGCACAGAATGCTAGCGGCTGGACCCCGTTGATGGTAGCTCGCTCATGGCATAGGAACTCTCTTGAGGAAATTCTTAGCAAAGAACCAGAGAGTCGAATACGCACTGTTCCTTCTCCATATTTGTGCCTCCCGCTTATGAGTATCATGAGCATTGCCAGGGAATTTGGCTGGAGGTACCTAAACCAATCACCTGTATGTATTGACCCATGTGCTGTCTGCTTAGAAGGAAGCTGCTCTGTTGCTGCAGAAGGATGCAAACATGAATTCTGCACGAGATGTGCTTTATACCTTTGCTCAACCAGTTACACATCAGTGAGCCCAGCAGGTGCCATACCATGCCCTCTCTGTCGACACCCAATCATCGCTTTCACTGCGCTTCCTGGGACAAGCCCAATAAGAGAGCTCCCAAGAAACAGTCTTTCATTGTCATTTTGCACCACATGCCCAGCTGTGAACTCCGATTCTACTCCCTCAATCGCCAGCCATCTGTACCGGACTGAATTCCAGTGTGCACGCATGCCACCTATGGGTTCATCCTCCTTCCGTTCCTTGAGCTGCCAGAGGTTGCCGGCGATGAAGCTTAACCCGTCGTTTTGTATGGGTGCTATGGATACAAATCCCTGCCTAATAAGATGCTCAAGGTTCGGACCTAGCTTTCGTCGGTCGGCTTCCCAAGGAGAAAGTAGCAGGAGAGCATGGCCTCTAACCTTTGATCCAATTGCTGCCACTGGTAGCTGATACCTGATATTTCCTCAGTTTTGTGCCCATTTTGAGGTTTACCATGTATATTCATTGGTTGCATTGGTCTGGTTTTTGCCGATGTGAGATGAACTTGCTGGTCCCAATTCCTTGTTGATATCAGTAGCAGCATGTAACTACTCCTTTCTCTTGTCTGTAAATAACCTTTGTATTGCTGTGTATTGTCCGGAAATGAAGAAATGAAATGCGGAT] consensusID : consensus_7423#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 597 fasta sequence [TTGTGAATCGCATCGGCGTTGTTTGCACCCCGCGATTCCCCAATCCATCCATCCAGTCCCCCCCCTCGCTGGAATCGTGGGTGTGGGGTGGGTTCTGAGGATTCGAGGCGGCAGGTCGCCTCCGAGGATTCCCCCTTCGAGTTCGAGGTCCCTTGTTTTCTTGCGAGGATTGGGGGCCTGATTTAGAGGGCGTTGTCGGTCGGTCTCGGTTTTGCATTTCTTCCAGCTCGGGACCGACGACCCTGGGCGATTCCCGAGGAGGAGAAAATTTTGGGCTTTCTGAACCTTGGGGTTAAAGATCGTCGGC-ATGCCTAAAGTCGGGAGCTTGATCCTGTCTGGTGATCATTCTTGAATCGAATGCGG---TTTGGGCGGCCTCGTGGATTGGGAAATTTCA--GGGTGAAGTCTTCGATTCGAGGCCTTCCCGTGCACGCTAAGAGAGGAGATCCTCAGCTTCGAGCATCCATGGGGTTCCTCAGCCTTGTGGGCAACTCATTTGGGTGCTCGGCTTCCGGCGAGCGGCTCGTCTCGGCGGCCCGCGACGGCGACCTGCAGGAGGCGCGCGCGCTGCTCGAGTACAACCCGCGGCTCGCCCGGTAC] [+] EMBL C73826 [TTGTGAATCGCATCGGCGTTGTTTGCACCCCGCGATTCCCCAATCCATCCATCCAGTCCCCCCCCTCGCTGGAATCGTGGGTGTGGGGTGGGTTCTGAGGATTCGAGGCGGCAGGTCGCCTCCGAGGATTCCCCCTTCGAGTTCGAGGTCCCTTGTTTTCTTGCGAGGATTGGGGGCCTGATTTAGAGGGCGTTGTCGGTCGGTCTCGGTTTTGCATTTCTTCCAGCTCGGGACCGACGACCCTGGGCGATTCCCGAGGAGGAGAAAATTTTGGGCTTTCTGAACCTTGGGGTTAAAGATCGTCGGCAATGCCTAAAGTCGGGAGCTTGATCCTGTCTGGTGATCAATCTTGAATCGAATGCGGGTTTTTGGCCGGNCTCGTGGATTNGGAAATTTCAAGGGGTGAAGTCTT ] [+] EMBL CB640245 [ CCCAATCCATCCATCCAGTCCCCCCCCTCGCTGGAATCGTGGGTGTGGGGTGGGTTCTGAGGATTCGAGGCGGCAGGTCGCCTCCGAGGATTCCCCCTTCGAGTTCGAGGTCCCTTGTTTTCTTGCGAGGATTGGGGGCCTGATTTAGAGGGCGTTGTCGGTCGGTCTCGGTTTTGCATTTCTTCCAGCTCGGGACCGACGACCCTGGGCGATTCCCGAGGAGGAGAAAATTTTGGGCTTTCTGAACCTTGGGGTTAAAGATCGTCGGC ATGCCTAAAGTCGGGAGCTTGATCCTGTCTGGTGATCATTCTTGAATCGAATGCGG TTTGGGCGGCCTCGTGGATTGGGAAATTTCA GGGTGAAGTCTTCGATTCGAGGCCTTCCCGTGCACGCTAAGAGAGGAGATCCTCAGCTTCGAGCATCCATGGGGTTCCTCAGCCTTGTGGGCAACTCATTTGGGTGCTCGGCTTCCGGCGAGCGGCTCG ] [+] EMBL AU164212 [ TTCGAGGTCCCTTGTTTTCTTGCGAGGATTGGGGGCCTGATTTAGAGGGCGTTGTCGGTCGGTCTCGGTTTTGCATTTCTTCCAGCTCGGGACCGACGACCCTGGGCGATTCCCGAGGAGGAGAAAATTTTGGGCTTTCTGAACCTTGGGGTTAAAGATCGTCGGC ATGCCTAAAGTCGGGAGCTTGATCCTGTCTGGTGATCATTCTTGAATCGAATGCGG TTTGGGCGGCCTCGTGGATTGGGAAATTTCA GGGTGAAGTCTTCGATTCGAGGCCTTCCCGTGCACGCTAAGAGAGGAGATCCTCAGCTTCGAGCATCCATGGGGTTCCTCAGCCTTGTGGGCAACTCATTTGGGTGCTCGGCTTCCGGCGAGCGGCTCGTCTCGGCGGCCCGCGACGGCGACCTGCAGGAGGCGCGCGCGCTGCTCGAGTACAACCCGCGGCTCGCCCGGTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7423#0 --------------------------------CGATTCCCCAATCCATCCATCCAGTCCC 28 consensus_7423#1 TTGTGAATCGCATCGGCGTTGTTTGCACCCCGCGATTCCCCAATCCATCCATCCAGTCCC 60 **************************** consensus_7423#0 CCCCCTCGCTGGAATCGTGGGTGTGGGGTGGGTTCTGAGGATTCGAGGCGGCAGGTCGCC 88 consensus_7423#1 CCCCCTCGCTGGAATCGTGGGTGTGGGGTGGGTTCTGAGGATTCGAGGCGGCAGGTCGCC 120 ************************************************************ consensus_7423#0 TCCGAGGATTCCCCCTTCGAGTTCGAGGTCCCTTGTTTTCTTGCGAGGATTGGGGGCCTG 148 consensus_7423#1 TCCGAGGATTCCCCCTTCGAGTTCGAGGTCCCTTGTTTTCTTGCGAGGATTGGGGGCCTG 180 ************************************************************ consensus_7423#0 ATTTAGAGGGCGTTGTCGGTCGGTCTCGGTTTTGCATTTCTTCCAGCTCGGGACCGACGA 208 consensus_7423#1 ATTTAGAGGGCGTTGTCGGTCGGTCTCGGTTTTGCATTTCTTCCAGCTCGGGACCGACGA 240 ************************************************************ consensus_7423#0 CCCTGGGCGATTCCCGAGGAGGAGTGAGTTCCACTCTGATTTCTTGGTGTAGCGCGGAAA 268 consensus_7423#1 CCCTGGGCGATTCCCGAGGAGGAG------------------------------------ 264 ************************ consensus_7423#0 GTTGGCTTTTTTGGGTCGAATTGTTGGTAGTCTCGCTGCAATTGGAAAATTTTGGGCTTT 328 consensus_7423#1 ---------------------------------------------AAAATTTTGGGCTTT 279 *************** consensus_7423#0 CTGAACCTTGGGGTTAAAGATCGTCGGCATGCCTAAAGTCGGGAGCTTGATCCTGTCTGG 388 consensus_7423#1 CTGAACCTTGGGGTTAAAGATCGTCGGCATGCCTAAAGTCGGGAGCTTGATCCTGTCTGG 339 ************************************************************ consensus_7423#0 TGATCATTCTTGAATCGAATGCGGTTTGGGCGGCCTCGTGGATTGGGAAATTTCAGGGTG 448 consensus_7423#1 TGATCATTCTTGAATCGAATGCGGTTTGGGCGGCCTCGTGGATTGGGAAATTTCAGGGTG 399 ************************************************************ consensus_7423#0 AAGTCTTCGATTCGAGGCCTTCCCGTGCACGCTAAGAGAGGAGATCCTCAGCTTCGAGCA 508 consensus_7423#1 AAGTCTTCGATTCGAGGCCTTCCCGTGCACGCTAAGAGAGGAGATCCTCAGCTTCGAGCA 459 ************************************************************ consensus_7423#0 TCCATGGGGTTCCTCAGCCTTGTGGGCAACTCATTTGGGTGCTCGGCTTCCGGCGAGCGG 568 consensus_7423#1 TCCATGGGGTTCCTCAGCCTTGTGGGCAACTCATTTGGGTGCTCGGCTTCCGGCGAGCGG 519 ************************************************************ consensus_7423#0 CTCGTCTCGGCGGCCCGCGACGGCGACCTGCAGGAGGCGCGCGCGCTGCTCGAGTACAAC 628 consensus_7423#1 CTCGTCTCGGCGGCCCGCGACGGCGACCTGCAGGAGGCGCGCGCGCTGCTCGAGTACAAC 579 ************************************************************ consensus_7423#0 CCGCGGCTCGCCCGGTACTCCACTTTCGGCGGCCGCAACTCGCCGCTGCACTACGCCGCC 688 consensus_7423#1 CCGCGGCTCGCCCGGTAC------------------------------------------ 597 ****************** consensus_7423#0 GCGCAGGGTCACCATGAGATTGTTTCTCTGTTGCTCGAATCCGGCGTCGAGATCAACCTC 748 consensus_7423#1 ------------------------------------------------------------ consensus_7423#0 AGGAATTACAGGGGCCAGACTGCTTTAATGCAAGCCTGTCAATATGGCCACTGGGAGGTT 808 consensus_7423#1 ------------------------------------------------------------ consensus_7423#0 GTTCAGACACTGATGCTTTTCAATGCAAATGTTCATAGGACAGATTATTTGAATGGCGGT 868 consensus_7423#1 ------------------------------------------------------------ consensus_7423#0 AGTGCTCTCCATTTTGCTGCACTACATGGTCATGCCCGGTGCCTTCGTCTTGTGCTTGCG 928 consensus_7423#1 ------------------------------------------------------------ consensus_7423#0 GATTATGTTCCCAGCATGCCAAACTTCTGGAACTCGATGAAGGACAGCCTATCTGAAGAA 988 consensus_7423#1 ------------------------------------------------------------ consensus_7423#0 GGTCCATCTGCTGATCTTGATGAAGATGGTTTGTTCAAGATGGTAAATCAGAAGGCGGAT 1048 consensus_7423#1 ------------------------------------------------------------ consensus_7423#0 GGAGGACTGACTCCGCTTCATATGGCAGCGTTAAATGGGCATGTAGAGTGTGTGCAATTG 1108 consensus_7423#1 ------------------------------------------------------------ consensus_7423#0 TTACTGGACTTGGGAGCATCTGTTATTGAGGCCACTATTGAAGATGGAACAACTATTGAC 1168 consensus_7423#1 ------------------------------------------------------------ consensus_7423#0 TTAATAGGAGCTGGTAGCACCCCGCTTCATTATGCTGCATGTGGTGGGAATGCTGTCTGT 1228 consensus_7423#1 ------------------------------------------------------------ consensus_7423#0 TGTCAACTTCTTATTGCTCGAGGAGCTAGCCTTTCTGCACAGAATGCTAGCGGCTGGACC 1288 consensus_7423#1 ------------------------------------------------------------ consensus_7423#0 CCGTTGATGGTAGCTCGCTCATGGCATAGGAACTCTCTTGAGGAAATTCTTAGCAAAGAA 1348 consensus_7423#1 ------------------------------------------------------------ consensus_7423#0 CCAGAGAGTCGAATACGCACTGTTCCTTCTCCATATTTGTGCCTCCCGCTTATGAGTATC 1408 consensus_7423#1 ------------------------------------------------------------ consensus_7423#0 ATGAGCATTGCCAGGGAATTTGGCTGGAGGTACCTAAACCAATCACCTGTATGTATTGAC 1468 consensus_7423#1 ------------------------------------------------------------ consensus_7423#0 CCATGTGCTGTCTGCTTAGAAGGAAGCTGCTCTGTTGCTGCAGAAGGATGCAAACATGAA 1528 consensus_7423#1 ------------------------------------------------------------ consensus_7423#0 TTCTGCACGAGATGTGCTTTATACCTTTGCTCAACCAGTTACACATCAGTGAGCCCAGCA 1588 consensus_7423#1 ------------------------------------------------------------ consensus_7423#0 GGTGCCATACCATGCCCTCTCTGTCGACACCCAATCATCGCTTTCACTGCGCTTCCTGGG 1648 consensus_7423#1 ------------------------------------------------------------ consensus_7423#0 ACAAGCCCAATAAGAGAGCTCCCAAGAAACAGTCTTTCATTGTCATTTTGCACCACATGC 1708 consensus_7423#1 ------------------------------------------------------------ consensus_7423#0 CCAGCTGTGAACTCCGATTCTACTCCCTCAATCGCCAGCCATCTGTACCGGACTGAATTC 1768 consensus_7423#1 ------------------------------------------------------------ consensus_7423#0 CAGTGTGCACGCATGCCACCTATGGGTTCATCCTCCTTCCGTTCCTTGAGCTGCCAGAGG 1828 consensus_7423#1 ------------------------------------------------------------ consensus_7423#0 TTGCCGGCGATGAAGCTTAACCCGTCGTTTTGTATGGGTGCTATGGATACAAATCCCTGC 1888 consensus_7423#1 ------------------------------------------------------------ consensus_7423#0 CTAATAAGATGCTCAAGGTTCGGACCTAGCTTTCGTCGGTCGGCTTCCCAAGGAGAAAGT 1948 consensus_7423#1 ------------------------------------------------------------ consensus_7423#0 AGCAGGAGAGCATGGCCTCTAACCTTTGATCCAATTGCTGCCACTGGTAGCTGATACCTG 2008 consensus_7423#1 ------------------------------------------------------------ consensus_7423#0 ATATTTCCTCAGTTTTGTGCCCATTTTGAGGTTTACCATGTATATTCATTGGTTGCATTG 2068 consensus_7423#1 ------------------------------------------------------------ consensus_7423#0 GTCTGGTTTTTGCCGATGTGAGATGAACTTGCTGGTCCCAATTCCTTGTTGATATCAGTA 2128 consensus_7423#1 ------------------------------------------------------------ consensus_7423#0 GCAGCATGTAACTACTCCTTTCTCTTGTCTGTAAATAACCTTTGTATTGCTGTGTATTGT 2188 consensus_7423#1 ------------------------------------------------------------ consensus_7423#0 CCGGAAATGAAGAAATGAAATGCGGAT 2215 consensus_7423#1 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||