These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7462#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 688 fasta sequence [CTGTCAACGATACGCTACGTAACGGCATGACTGTGTTTTTTTTTTTTTTTTTCTTTTTTAAAAGGACTCATCTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTAGACCATATCGAGTCAACTGACAACCATAGACTAGACCAAAAATACGGCGGACTGCATAGATAAAACATCAGTGTCGAGCAGAAGGAACCGCTCAGCACTTGACCTCCTTCAGCCCATGAGAGAAGTAAAGGAAGGTTGGGTCGGTGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGCCATCATCATGCATGCTCTCACCAACAAAGAACTGAAGGTCCTTGAGCTTTCCAAGCAAGTACTTGGTGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTTCCGCATCCAGCTT-GGCGGAGAGGTTCTTGATGTAGCGCTTCATGAAGGTCACAAACTGCTTCTTGTCAAAAGGAGGTTGCTCCTGAAGACGGAAGGTGTCCACAATGTCGACCACCTTCACAGCTTGGTCATCAACACCCTCATCATCACCACCACCCTCAGCAGATGGGTTGGCACCAATGTCCACATCAATAGCTCCTTGAACGACCCACTTGCCATCGACTTCCCAGAGGATGCCGTTCTCGATCTCTCTGTAGGGGAACGAATCCGACAGGAACTCGTC] [+] EMBL CF320702 [CTGTCAACGATACGCTACGTAACGGCATGACTGTGTTTTTTTTTTTTTTTTTCTTTTTTAAAAGGACTCATCTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTAGACCATATCGAGTCAACTGACAACCATAGACTAGACCAAAAATACGGCGGACTGCATAGATAAAACATCAGTGTCGAGCAGAAGGAACCGCTCAGCACTTGACCTCCTTCAGCCCATGAGAGAAGTAAAGGAAGGTTGGGTCGGTGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGCCATCATCATGCATGCTCTCACCAACAAAGAACTGAAGGTCCTTGAGCTTTCCAAGCAAGTACTTGGTGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTTCCGCATCCAGCTT GGCGGAGAGGTTCTTGATGTAGCGCTTCATGAAGGTCACAAACTGCTTCTTGTCAAAAGGAGGTTGCTCCTGAAGACGGAAGGTGTCCACAATGTCGACCACCTTCACAGCTTGGTCATCAACACCCTCATCATCACCACCACCCTCAGCAGATGGGTTGGCACCAATGTCCACATCAATAGCTCCTTGAACGACCCACTTGCC ] [+] EMBL CF319318 [ CGGCATGACAGTGTTTTTTTTTTT TTTTTTAAAAGGACTCATCTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTAGACCATATCGAGTCAACTGACAACCATAGACTAGACCAAAAATACGGCGGACTGCATAGATAAAACATCAGTGTCGAGCAGAAGGAACCGCTCAGCACTTGACCTCCTTCAGCCCATGAGAGAAGTAAAGGAAGGTTGGGTCGGTGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGCCATCATCATGCATGCTCTCACCAACAAAGAACTGAAGGTCCTTGAGCTTTCCAAGCAAGTACTTGGTGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTTCCGCATCCAGCTTGGGCGGAGAGGTTCTTGATGTAGCGCTTCATGAAGGTCACAAACTGCTTCTTGTCAAAAGGAGGTTGCTCCTGAAGACGGAAGGTGTCCACAATGTCGACCACCTTCACAGCTTGGTCATCAACACCCTCATCATCACCACCACCCTCAGCAGATGGGTTGGCACCAATGTCCACATCAATAGCTCCTTGAACGACCCACTTGCCATCGACTTCCCAGAGGATGCCGTTCTCGATCTCTCTGTAGGGGAACGAATCCGACAGGAACTCGTC] [+] EMBL CF319513 [ TTTTTTTTTTTTTTTTTTTTTTTAAAAGGACTCATTTTAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAA ] consensusID : consensus_7462#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 185 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAGGACTCATCTCAACATCCATAACAAGCAAACGATAGTTGCTTCCGACACCAACATTAGACCATATCGAGTCAGCTGACAACCATAGACTAGACCAAAAATACGGCGGACTGCATAGATAAAGCATCAGTGTCGAGCAGAAGGAACCGAT] [-] EMBL CF318121 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAGGACTCATCTCAACATCCATAACAAGCAAACGATAGTTGCTTCCGACACCAACATTAGACCATATCGAGTCAGCTGACAACCATAGACTAGACCAAAAATACGGCGGACTGCATAGATAAAGCATCAGTGTCGAGCAGAAGGAACCGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7462#0 CTGTCAACGATACGCTACGTAACGGCATGACTGTGTTTTTTTTTTTTTTTTTCTTTTTTA 60 consensus_7462#1 ---------------------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA 33 * * * ***************** **** * consensus_7462#0 AAAGGACTCATCTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTA 120 consensus_7462#1 AAAGGACTCATCTCAACATCCATAACAAGCAAACGATAGTTGCTTCCGACACCAACATTA 93 ****************************************** ***************** consensus_7462#0 GACCATATCGAGTCAACTGACAACCATAGACTAGACCAAAAATACGGCGGACTGCATAGA 180 consensus_7462#1 GACCATATCGAGTCAGCTGACAACCATAGACTAGACCAAAAATACGGCGGACTGCATAGA 153 *************** ******************************************** consensus_7462#0 TAAAACATCAGTGTCGAGCAGAAGGAACCGCTCAGCACTTGACCTCCTTCAGCCCATGAG 240 consensus_7462#1 TAAAGCATCAGTGTCGAGCAGAAGGAACCGAT---------------------------- 185 **** ************************* * consensus_7462#0 AGAAGTAAAGGAAGGTTGGGTCGGTGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGC 300 consensus_7462#1 ------------------------------------------------------------ consensus_7462#0 CATCATCATGCATGCTCTCACCAACAAAGAACTGAAGGTCCTTGAGCTTTCCAAGCAAGT 360 consensus_7462#1 ------------------------------------------------------------ consensus_7462#0 ACTTGGTGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTTCCGCATCCAGCTTGG 420 consensus_7462#1 ------------------------------------------------------------ consensus_7462#0 CGGAGAGGTTCTTGATGTAGCGCTTCATGAAGGTCACAAACTGCTTCTTGTCAAAAGGAG 480 consensus_7462#1 ------------------------------------------------------------ consensus_7462#0 GTTGCTCCTGAAGACGGAAGGTGTCCACAATGTCGACCACCTTCACAGCTTGGTCATCAA 540 consensus_7462#1 ------------------------------------------------------------ consensus_7462#0 CACCCTCATCATCACCACCACCCTCAGCAGATGGGTTGGCACCAATGTCCACATCAATAG 600 consensus_7462#1 ------------------------------------------------------------ consensus_7462#0 CTCCTTGAACGACCCACTTGCCATCGACTTCCCAGAGGATGCCGTTCTCGATCTCTCTGT 660 consensus_7462#1 ------------------------------------------------------------ consensus_7462#0 AGGGGAACGAATCCGACAGGAACTCGTC 688 consensus_7462#1 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||