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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7473#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1794 fasta sequence
[TTCTTGGCCTCGCCTCGCCTCGCCTCTGCCCATCTCCCCTCCCACTCGATTCCTCCACCTCTGCTCCGAATCTCCCTTTCCGCGTGCGCGCGTCGATTCCTCCGTGCTCTCACCACCCGATTTGGGGGCCGGTCTGAGATGGGGCAGTGGCACTGACCGGAGGACCTTCGCCGACGTCGTCCATGGCGCAGCCGCAGAAGCGAGTCTACGAAGCTTGGAAAGGGAATAATAGGTTCTTGTTTGGTGGGAGGTTGATATTCGGACCTGATGCCAAGTCCCTGCTCGTCTCTGTTTCGCTCATCGTGGTGCCTGTTCTCGTCTTCTGCGTGTTCGTTGCGCGGCATCTCCGGCATCAGTTCTCCACCTACAACGCAGGATATGCGATTCCTGCGGTTGCAGTACTCTTCATGATCTATGTACTTACCTTGTTGTTCATCACCTCAGCTCAGGATCCTGGCATTGTGCCTCGCGCATCGCATCCACCGGAGGAAGAGTTTGCCTATGGCAATCCATTGAACGGGGGCACACCAGGCAGGCTGCAATTTCCCCGTGTAAAAGAAATAATGGTTAATGGGATGCTTGTGAAAGTAAAGTATTGTGACACCTGCATGATTTACCGGCCCCCTCGGTGTTCGCACTGTTCAATATGCAACAATTGTGTCGAGCGCTTTGATCATCATTGCCCTTGGGTTGGACAATGCATTGGACAGCGCAATTATCGATTCTTTTTCCTGTTTGTTTCCTCCTCGACTCTTCTTTGCATTTAAGTATTTGCAATGTCGGCGTTATACATCAAGTTCCTCATGGAGGAGGGCTATCCTACAGTGTGGAAGGCTTTGAAACACTCTCCAGCATCTTTGGTGCTTATGATATACTGTTTCATCGCCCTCTGGTTTGTTGGTGGACTCACTGGATTTCATTCATATCTCATTTGCACTAACCAGACCACATACGAGAACTTTCGATACAGATCAGACAACAGGCCTAATGTCTATGATCAAGGATGTCTGAATAATTGCTTAGGAGTCTTCTGTAGTAAGACAAAACCTTCAAAACACAAATTCAGAGCCTATGTACAAGAGGAAGTACGAGCTCCAGTAGTTAACTTTGGCAGGCAGATGGAAGAAGAGCCAGCTGGTGGCCCTCGGGCAAAAGTAGAAGATGATCTTGAGATCGGTAGTGATCTCCTGCAGATCTCTCAGCGGCGCAACTATGGGGATGTTGATCTTGAAATGGGAAGTCAGGACTGCAGTGAGATGGAAGGCATTCCCAACGCCAAACTTGCGATAGGTTCTGAATCGCAGATTCCTGCAATCGGAAGTGAGGTACGAGTGCGGCACTCGAGCTGGGATCGTAGAAGTGGGAATTGGGACATGTCATTAGATGTAATTGGAAGAAGTGCATCAGATGTAATTAGAAGAAGTGCTTCTGGCCATGAGGCTGCACCTCCATTTCAAACAGAAACTCACTAGTCAGTTATTCGTGCATTGAGAAGATGTGTCAGAAACCTGAACTTGGATTTCAAGGCTGTTTAACTGATGATGACAGTATGACACATACCCAGAGAGCAAGAAAGAAAAATGCACATGACGCATTTTGACTTTGACTGCCGTAATTGGTATTTTCAATCATTTTTCATGTATGAACAGTTACTTTAGTCAAAGATTCCGTGCGGTTGGGGTCACATATTTGTGTTTTTTTTTTTTCTTTTTTTGTGTGGCAATCTGATCTCACAACGTCTTCATGATTCTTTATGTAAATTACTATTGCATGAAAAAAAAAGAAAAAAAAAAA]
[+] EMBL AK064076 [TTCTTGGCCTCGCCTCGCCTCGCCTCTGCCCATCTCCCCTCCCACTCGATTCCTCCACCTCTGCTCCGAATCTCCCTTTCCGCGTGCGCGCGTCGATTCCTCCGTGCTCTCACCACCCGATTTGGGGGCCGGTCTGAGATGGGGCAGTGGCACTGACCGGAGGACCTTCGCCGACGTCGTCCATGGCGCAGCCGCAGAAGCGAGTCTACGAAGCTTGGAAAGGGAATAATAGGTTCTTGTTTGGTGGGAGGTTGATATTCGGACCTGATGCCAAGTCCCTGCTCGTCTCTGTTTCGCTCATCGTGGTGCCTGTTCTCGTCTTCTGCGTGTTCGTTGCGCGGCATCTCCGGCATCAGTTCTCCACCTACAACGCAGGATATGCGATTCCTGCGGTTGCAGTACTCTTCATGATCTATGTACTTACCTTGTTGTTCATCACCTCAGCTCAGGATCCTGGCATTGTGCCTCGCGCATCGCATCCACCGGAGGAAGAGTTTGCCTATGGCAATCCATTGAACGGGGGCACACCAGGCAGGCTGCAATTTCCCCGTGTAAAAGAAATAATGGTTAATGGGATGCTTGTGAAAGTAAAGTATTGTGACACCTGCATGATTTACCGGCCCCCTCGGTGTTCGCACTGTTCAATATGCAACAATTGTGTCGAGCGCTTTGATCATCATTGCCCTTGGGTTGGACAATGCATTGGACAGCGCAATTATCGATTCTTTTTCCTGTTTGTTTCCTCCTCGACTCTTCTTTGCATTTAAGTATTTGCAATGTCGGCGTTATACATCAAGTTCCTCATGGAGGAGGGCTATCCTACAGTGTGGAAGGCTTTGAAACACTCTCCAGCATCTTTGGTGCTTATGATATACTGTTTCATCGCCCTCTGGTTTGTTGGTGGACTCACTGGATTTCATTCATATCTCATTTGCACTAACCAGACCACATACGAGAACTTTCGATACAGATCAGACAACAGGCCTAATGTCTATGATCAAGGATGTCTGAATAATTGCTTAGGAGTCTTCTGTAGTAAGACAAAACCTTCAAAACACAAATTCAGAGCCTATGTACAAGAGGAAGTACGAGCTCCAGTAGTTAACTTTGGCAGGCAGATGGAAGAAGAGCCAGCTGGTGGCCCTCGGGCAAAAGTAGAAGATGATCTTGAGATCGGTAGTGATCTCCTGCAGATCTCTCAGCGGCGCAACTATGGGGATGTTGATCTTGAAATGGGAAGTCAGGACTGCAGTGAGATGGAAGGCATTCCCAACGCCAAACTTGCGATAGGTTCTGAATCGCAGATTCCTGCAATCGGAAGTGAGGTACGAGTGCGGCACTCGAGCTGGGATCGTAGAAGTGGGAATTGGGACATGTCATTAGATGTAATTGGAAGAAGTGCATCAGATGTAATTAGAAGAAGTGCTTCTGGCCATGAGGCTGCACCTCCATTTCAAACAGAAACTCACTAGTCAGTTATTCGTGCATTGAGAAGATGTGTCAGAAACCTGAACTTGGATTTCAAGGCTGTTTAACTGATGATGACAGTATGACACATACCCAGAGAGCAAGGAAGAAAAATGCACATGACGCATTTTGACTTTGACTGCCGTAATTGGTATTTTCAATCATTTTTCATGTATGAACAGTTACTTTAGTCAAAGATTCCGTGC ]
[-] EMBL CA759812 [ GCAGGCAGATGGAAGAAGAGCCAGCTGGTGGCCCTCGGGCAAAAGTAGAAGATGATCTTGAGATCGGTAGTGATCTCCTGCAGATCTCTAAGCGGCGCAACTATGGGGATGTTGATCTTGAAATGGGAAGTCAGGACTGCAGTGAGATGGAAGGCATTCCCAACGCCAAACTTGCGATAGGTTTTGAATCGCAGATTCCTGCAATCGGAAGTGAGGTACGAGTGCGGCACTCGAGCTGGGATCGTAGAAGTGGGAATTGGGACATGTCATTAGATGTAATTGGAAGAAGTGCATCAGATGTAATTAGAAGAAGTGCTTCTGGCCATGAGGCTGCACCTCCATTTCAAACAGAAACTCACTAGTCAGTTATTCGTGCATTGAGAAGATGTGTCAGAAACCTGAACTTGGATTTCAAGGCTGTTTAACTGATGATGACAGTATGACCCATACCCAGAGAGCAAGAAAGAAAAATGCCCATGACGCATTTTGACTTTGACTGCCGTAATTGGTATTTTCAATCATTTTTCATGTATGAACAGTTACTTTAGTCAAAGATTCCGTGCGGTTGGGGTCACATATTTGTGTTTTTTTTTTTTCTTTTTTTGTGTGGCAATCTGATCTCACAACGTCTTCATGATTCTTTATGTAAATTACTATTGCATGAAAAAAAAAGAAAAAAAAAAA]
[+] EMBL AU225667 [ gccgctGAAGTCAGGACTGCAGTGAGATGGAAGGCATTCCCAACGCCAAACTTGCGATAGGTTCTGAATCGCAGATTCCTGCAATCGGAAGTGAGGTACGAGTGCGGCACTCGAGCTGGGATCGTAGAAGTGGGAATTGGGACATGTCATTAGATGTAATTGGAAGAAGTGCATCAGATGTAATTAGAAGAAGTGCTTCTGGCCATGAGGCTGCACCTCCATTTCAAACAGAAACTCACTAGTCAGTTATTCGTGCATTGAGAAGATGTGTCAGAAACCTGAACTTGGATTTCAAGGCTGTTTAACTGATGATGACAGTATGACACATACCCAGAGAGCAAGAAAGAAAAATGCACATGACGCATTTTGACTTTGACTGCCGTAATTGGTA ]
consensusID : consensus_7473#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence
[CTTAGCGGGCAACTATGGGGATGTTGATCTTGAAATGGGAAGTCAGGACTGCAGCGAGATGGAAGGCATTCCCAACGCCAAACTTGCGATAGGTTCTGAATCGCAGATTCCTGCAATCGGAAGTGAGGTACGAGTGCGGCACTCGAGCTGGGATCGTAGAAGTGGGAATTGGGACATGTCATTAGATGTAATTGGAAGAAGTGCATCAGATGTAATTAGAAGAAGTGCTTCTGGCCATGAGGCTGCACCTCCATTTCAAACAGAAACTCACTAGTCAGTTATTCGTGCATTGAGAAGATGTGTCAGAAACCTGAACTTGGATTTCAAGGCTGTTTAACTGATGATGACAGTATGACACATACCCAGAGAGCAAGAAAGAAAAATGCACATGACGCATTTTGACTTTGACTGCCGTAATTGGTATTTTCAATCATTTTTCATGTATGGACAGTTACTTTAGTCAAAGATTCCGTGCGGTTGGGGTCACATATTTGTGTTTTTTTTTTCATTTTTTGTGTGGCAATCTGATCTCACAGCGTCTTCATGATTCTTTATGTAAATTACTATTGCATGATACTCATCCACCTGTAATTCCTCTGCAGCTTCCTTCAGGAATTTCTGTAGTGCATCTCCATTAGCTTTCAAAAAA]
[-] EMBL CA759813 [CTTAGCGGGCAACTATGGGGATGTTGATCTTGAAATGGGAAGTCAGGACTGCAGCGAGATGGAAGGCATTCCCAACGCCAAACTTGCGATAGGTTCTGAATCGCAGATTCCTGCAATCGGAAGTGAGGTACGAGTGCGGCACTCGAGCTGGGATCGTAGAAGTGGGAATTGGGACATGTCATTAGATGTAATTGGAAGAAGTGCATCAGATGTAATTAGAAGAAGTGCTTCTGGCCATGAGGCTGCACCTCCATTTCAAACAGAAACTCACTAGTCAGTTATTCGTGCATTGAGAAGATGTGTCAGAAACCTGAACTTGGATTTCAAGGCTGTTTAACTGATGATGACAGTATGACACATACCCAGAGAGCAAGAAAGAAAAATGCACATGACGCATTTTGACTTTGACTGCCGTAATTGGTATTTTCAATCATTTTTCATGTATGGACAGTTACTTTAGTCAAAGATTCCGTGCGGTTGGGGTCACATATTTGTGTTTTTTTTTTCATTTTTTGTGTGGCAATCTGATCTCACAGCGTCTTCATGATTCTTTATGTAAATTACTATTGCATGATACTCATCCACCTGTAATTCCTCTGCAGCTTCCTTCAGGAATTTCTGTAGTGCATCTCCATTAGCTTTCAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7473#0 TTCTTGGCCTCGCCTCGCCTCGCCTCTGCCCATCTCCCCTCCCACTCGATTCCTCCACCT 60
consensus_7473#1 ------------------------------------------------------------
consensus_7473#0 CTGCTCCGAATCTCCCTTTCCGCGTGCGCGCGTCGATTCCTCCGTGCTCTCACCACCCGA 120
consensus_7473#1 ------------------------------------------------------------
consensus_7473#0 TTTGGGGGCCGGTCTGAGATGGGGCAGTGGCACTGACCGGAGGACCTTCGCCGACGTCGT 180
consensus_7473#1 ------------------------------------------------------------
consensus_7473#0 CCATGGCGCAGCCGCAGAAGCGAGTCTACGAAGCTTGGAAAGGGAATAATAGGTTCTTGT 240
consensus_7473#1 ------------------------------------------------------------
consensus_7473#0 TTGGTGGGAGGTTGATATTCGGACCTGATGCCAAGTCCCTGCTCGTCTCTGTTTCGCTCA 300
consensus_7473#1 ------------------------------------------------------------
consensus_7473#0 TCGTGGTGCCTGTTCTCGTCTTCTGCGTGTTCGTTGCGCGGCATCTCCGGCATCAGTTCT 360
consensus_7473#1 ------------------------------------------------------------
consensus_7473#0 CCACCTACAACGCAGGATATGCGATTCCTGCGGTTGCAGTACTCTTCATGATCTATGTAC 420
consensus_7473#1 ------------------------------------------------------------
consensus_7473#0 TTACCTTGTTGTTCATCACCTCAGCTCAGGATCCTGGCATTGTGCCTCGCGCATCGCATC 480
consensus_7473#1 ------------------------------------------------------------
consensus_7473#0 CACCGGAGGAAGAGTTTGCCTATGGCAATCCATTGAACGGGGGCACACCAGGCAGGCTGC 540
consensus_7473#1 ------------------------------------------------------------
consensus_7473#0 AATTTCCCCGTGTAAAAGAAATAATGGTTAATGGGATGCTTGTGAAAGTAAAGTATTGTG 600
consensus_7473#1 ------------------------------------------------------------
consensus_7473#0 ACACCTGCATGATTTACCGGCCCCCTCGGTGTTCGCACTGTTCAATATGCAACAATTGTG 660
consensus_7473#1 ------------------------------------------------------------
consensus_7473#0 TCGAGCGCTTTGATCATCATTGCCCTTGGGTTGGACAATGCATTGGACAGCGCAATTATC 720
consensus_7473#1 ------------------------------------------------------------
consensus_7473#0 GATTCTTTTTCCTGTTTGTTTCCTCCTCGACTCTTCTTTGCATTTAAGTATTTGCAATGT 780
consensus_7473#1 ------------------------------------------------------------
consensus_7473#0 CGGCGTTATACATCAAGTTCCTCATGGAGGAGGGCTATCCTACAGTGTGGAAGGCTTTGA 840
consensus_7473#1 ------------------------------------------------------------
consensus_7473#0 AACACTCTCCAGCATCTTTGGTGCTTATGATATACTGTTTCATCGCCCTCTGGTTTGTTG 900
consensus_7473#1 ------------------------------------------------------------
consensus_7473#0 GTGGACTCACTGGATTTCATTCATATCTCATTTGCACTAACCAGACCACATACGAGAACT 960
consensus_7473#1 ------------------------------------------------------------
consensus_7473#0 TTCGATACAGATCAGACAACAGGCCTAATGTCTATGATCAAGGATGTCTGAATAATTGCT 1020
consensus_7473#1 ------------------------------------------------------------
consensus_7473#0 TAGGAGTCTTCTGTAGTAAGACAAAACCTTCAAAACACAAATTCAGAGCCTATGTACAAG 1080
consensus_7473#1 ------------------------------------------------------------
consensus_7473#0 AGGAAGTACGAGCTCCAGTAGTTAACTTTGGCAGGCAGATGGAAGAAGAGCCAGCTGGTG 1140
consensus_7473#1 ------------------------------------------------------------
consensus_7473#0 GCCCTCGGGCAAAAGTAGAAGATGATCTTGAGATCGGTAGTGATCTCCTGCAGATCTCTC 1200
consensus_7473#1 ---------------------------------------------------------CTT 3
**
consensus_7473#0 AGCGGCGCAACTATGGGGATGTTGATCTTGAAATGGGAAGTCAGGACTGCAGTGAGATGG 1260
consensus_7473#1 AGCGG-GCAACTATGGGGATGTTGATCTTGAAATGGGAAGTCAGGACTGCAGCGAGATGG 62
***** ********************************************** *******
consensus_7473#0 AAGGCATTCCCAACGCCAAACTTGCGATAGGTTCTGAATCGCAGATTCCTGCAATCGGAA 1320
consensus_7473#1 AAGGCATTCCCAACGCCAAACTTGCGATAGGTTCTGAATCGCAGATTCCTGCAATCGGAA 122
************************************************************
consensus_7473#0 GTGAGGTACGAGTGCGGCACTCGAGCTGGGATCGTAGAAGTGGGAATTGGGACATGTCAT 1380
consensus_7473#1 GTGAGGTACGAGTGCGGCACTCGAGCTGGGATCGTAGAAGTGGGAATTGGGACATGTCAT 182
************************************************************
consensus_7473#0 TAGATGTAATTGGAAGAAGTGCATCAGATGTAATTAGAAGAAGTGCTTCTGGCCATGAGG 1440
consensus_7473#1 TAGATGTAATTGGAAGAAGTGCATCAGATGTAATTAGAAGAAGTGCTTCTGGCCATGAGG 242
************************************************************
consensus_7473#0 CTGCACCTCCATTTCAAACAGAAACTCACTAGTCAGTTATTCGTGCATTGAGAAGATGTG 1500
consensus_7473#1 CTGCACCTCCATTTCAAACAGAAACTCACTAGTCAGTTATTCGTGCATTGAGAAGATGTG 302
************************************************************
consensus_7473#0 TCAGAAACCTGAACTTGGATTTCAAGGCTGTTTAACTGATGATGACAGTATGACACATAC 1560
consensus_7473#1 TCAGAAACCTGAACTTGGATTTCAAGGCTGTTTAACTGATGATGACAGTATGACACATAC 362
************************************************************
consensus_7473#0 CCAGAGAGCAAGAAAGAAAAATGCACATGACGCATTTTGACTTTGACTGCCGTAATTGGT 1620
consensus_7473#1 CCAGAGAGCAAGAAAGAAAAATGCACATGACGCATTTTGACTTTGACTGCCGTAATTGGT 422
************************************************************
consensus_7473#0 ATTTTCAATCATTTTTCATGTATGAACAGTTACTTTAGTCAAAGATTCCGTGCGGTTGGG 1680
consensus_7473#1 ATTTTCAATCATTTTTCATGTATGGACAGTTACTTTAGTCAAAGATTCCGTGCGGTTGGG 482
************************ ***********************************
consensus_7473#0 GTCACATATTTGTGTTTTTTTTTTTTCTTTTTTTGTGTGGCAATCTGATCTCACAACGTC 1740
consensus_7473#1 GTCACATATTTGTGTTTTTTTTT--TCATTTTTTGTGTGGCAATCTGATCTCACAGCGTC 540
*********************** ** *************************** ****
consensus_7473#0 TTCATGATTCTTTATGTAAATTACTATTGCATGAAAAAAAAAGAAAAAAAAAAA------ 1794
consensus_7473#1 TTCATGATTCTTTATGTAAATTACTATTGCATGATACTCATCCACCTGTAATTCCTCTGC 600
********************************** * * * **
consensus_7473#0 -------------------------------------------------
consensus_7473#1 AGCTTCCTTCAGGAATTTCTGTAGTGCATCTCCATTAGCTTTCAAAAAA 649
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||