These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7502#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1796 fasta sequence [AGAGAAAGGGAAAAAGGGAAAAGAAGAAGCAGCAGCAGCTCAAGACTCAACTCAAGTAGAAGAAGAAGAATAGGGAGAGAGAGAGACCATCGATCGATCTGTCTCTTTTGCCTGCTCTGCTCCTCTTGTTTTCTTTTGCCTTGTTTGCCTCCTCTGCAACGAACGCAGACCTAGCAGCATGCATATTCAGTCAAGAGTTTAATTGCAAGAAGAAGAAGAAGAAGAAGAAATCTACTACTAGTCCAGTTGCAGTTGCAGAGGCATATTGTGGTTGGATAATGGAGACGGTGTCGGTGTGCGGGCTCCACCCGGGCGTGGCGGTGACGGGGTTCTGCCCGGCCTGCCTCCGCGACCGCCTCGCCGGCCTCCACCCGCCATCCGACCTCCGCCGCTGCAAGTCCTTCTCCTACTACGCCCGCTCCTCATCCTACTTGGAGCCGCACCCGCAGCAGGATGCTCTAGTCCTGCCCGATGCTGCTGATGCTCCAACCAACACCAAGCTCGCCTTGGGCTCCCTGGGCAAGCGCTGGCAGGAATGGCGTCGCAAGTCCAAGCTCAAGCACCACCACCCGCCCCCCGCCACCGCCACCGACCCCGCGCTGCTGGCCCGCCGCTCCTGCGACGCTTTCTCCACCCGCACCATGCTGGACGAGCCCCGCGCGTCCTACCATCCCACGCTCTTCGTTCCACGCTCCGACGACCAGATCCCCGTGGAGGAGGAGGAGCGAGCTTACGTGCCCGGCGGCTCCGCCCAGACAAGGGACTACTACCTCGACTCCTCCAGCTCCAGCAGGAGGCGCCGGAGCGTCGACCGCAAGTCCTCCTCCGACGCCGGCGACCAAATCCCCAGGATGGTGGCCGCGGCTGCCAATGCCAGGGTTTCACCGGCCACAGAGCTGTACCACCAGCCCCACACGTTCCACTATCACCAGCCAAGCTTCGAGCCGCCGCCATTATTGGCCCGGGAACGACAAGAGGCAAAGAGCAAGCCTAAGAACAAGGGGATCAAGGGGTGGAGCATCTGGGGCCTCCTGCACAAGAAGAGCAGCACCACCAACAGTGTGGGTGCCACTGCCAGTGCGTTCGCCGGCGAGGCACGGGCGGCGCCACCGGAGCTCCGGGCAAGGGGTTACGACGGCCAGATGCTCCGGTGCAACAGCAGCGTCAGCGCAAGAAGCTCATTCAGTGGAATTGGAAGCTCATTCAATGGCGGCAGGTTGGGGATGAGGAGGGCAGATGAAGTTTTGCTTGAGAGGAATTTCAGCGCCAGGTACTCTTCGTCTTCCTCCTGCAGGTATCAGTTTCACAAGGATGATTACTCCAACTCCATTGCCAACAATTCTGGAGCTGGAGCTGGAAGCAGGCCTCCTCGTTCCTCCACCTTGCCGAGGACCTCACTTGGACTCTACTACTACTGAACTCAATTTTATTATTATTACCCTTAGCCGCCCTAAATCTCATCAATCAAAAATTATTAGTGTGCATAGCATAGCAGCTTATATATACTTGTTGCAGTTTTACAACTCAACTGGTGATTGCCTCCACCACGTACGGGTGCATTATACCTTACTTAATTTACACTAGTACACCCTTTTGTTTATTAATCTCCTCCAACCACGACATATGCATGTTTCTTCTTTCATCCATTCAGTCCCAGACTCAAGCCTGTCTCATAATCTCATATGCTTCAAATCAGCCATGTGTTGGATTGAAAAGAAAAACGCTTTTCCCTTCATCAGTTTGTAAGGCTCCTTTTCTTTCATATACTGATATACAACTATGCAATGAAGCTCATG] [+] EMBL AK105585 [AGAGAAAGGGAAAAAGGGAAAAGAAGAAGCAGCAGCAGCTCAAGACTCAACTCAAGTAGAAGAAGAAGAATAGGGAGAGAGAGAGACCATCGATCGATCTGTCTCTTTTGCCTGCTCTGCTCCTCTTGTTTTCTTTTGCCTTGTTTGCCTCCTCTGCAACGAACGCAGACCTAGCAGCATGCATATTCAGTCAAGAGTTTAATTGCAAGAAGAAGAAGAAGAAGAAGAAATCTACTACTAGTCCAGTTGCAGTTGCAGAGGCATATTGTGGTTGGATAATGGAGACGGTGTCGGTGTGCGGGCTCCACCCGGGCGTGGCGGTGACGGGGTTCTGCCCGGCCTGCCTCCGCGACCGCCTCGCCGGCCTCCACCCGCCATCCGACCTCCGCCGCTGCAAGTCCTTCTCCTACTACGCCCGCTCCTCATCCTACTTGGAGCCGCACCCGCAGCAGGATGCTCTAGTCCTGCCCGATGCTGCTGATGCTCCAACCAACACCAAGCTCGCCTTGGGCTCCCTGGGCAAGCGCTGGCAGGAATGGCGTCGCAAGTCCAAGCTCAAGCACCACCACCCGCCCCCCGCCACCGCCACCGACCCCGCGCTGCTGGCCCGCCGCTCCTGCGACGCTTTCTCCACCCGCACCATGCTGGACGAGCCCCGCGCGTCCTACCATCCCACGCTCTTCGTTCCACGCTCCGACGACCAGATCCCCGTGGAGGAGGAGGAGCGAGCTTACGTGCCCGGCGGCTCCGCCCAGACAAGGGACTACTACCTCGACTCCTCCAGCTCCAGCAGGAGGCGCCGGAGCGTCGACCGCAAGTCCTCCTCCGACGCCGGCGACCAAATCCCCAGGATGGTGGCCGCGGCTGCCAATGCCAGGGTTTCACCGGCCACAGAGCTGTACCACCAGCCCCACACGTTCCACTATCACCAGCCAAGCTTCGAGCCGCCGCCATTATTGGCCCGGGAACGACAAGAGGCAAAGAGCAAGCCTAAGAACAAGGGGATCAAGGGGTGGAGCATCTGGGGCCTCCTGCACAAGAAGAGCAGCACCACCAACAGTGTGGGTGCCACTGCCAGTGCGTTCGCCGGCGAGGCACGGGCGGCGCCACCGGAGCTCCGGGCAAGGGGTTACGACGGCCAGATGCTCCGGTGCAACAGCAGCGTCAGCGCAAGAAGCTCATTCAGTGGAATTGGAAGCTCATTCAATGGCGGCAGGTTGGGGATGAGGAGGGCAGATGAAGTTTTGCTTGAGAGGAATTTCAGCGCCAGGTACTCTTCGTCTTCCTCCTGCGGGTATCAGTTTCACAAGGATGATTACTCCAACTCCATTGCCAACAATTCTGGAGCTGGAGCTGGAAGCAGGCCTCCTCGTTCCTCCACCTTGCCGAGGACCTCACTTGGACTCTACTACTACTGAACTCAATTTTATTATTATTACCCTTGGCCGCCCTAAATCTCATCAATCAAAAATTATTAGTGTGCATAGCATAGCAGCTTATATATACTTGTTGCAGTTTTACAACTCAACTGGTGATTGCCTCCACCACGTACGGGTGCATTATACCTTACTTAATTTACACTAGTACACCCTTTTGTTTATTAATCTCCTCCAACCACGACATATGCATGTTTCTTCTTTCATCCATTCAGTCCCAGACTCAAGCCTGTCTCATAATCTCATATGCTTCAAATCAGCCATGTGTTGGATTGAAAAGAAAAACGCTTTTCCCTTCATCAGTTTGTAAGGCTCCTTTTCTTTCATATACTGATATACAACTATGCAATGAAGCTCATG] [+] EMBL AK072181 [ CGATCGATCTGTCTCTTTTGCCTGCTCTGCTCCTCTTGTTTTCTTTTGCCTTGTTTGCCTCCTCTGCAACGAACGCAGACCTAGCAGCATGCATATTCAGTCAAGAGTTTAATTGCAAGAAGAAGAAGAAGAAGAAGAAATCTACTACTAGTCCAGTTGCAGTTGCAGAGGCATATTGTGGTTGGATAATGGAGACGGTGTCGGTGTGCGGGCTCCACCCGGGCGTGGCGGTGACGGGGTTCTGCCCGGCCTGCCTCCGCGACCGCCTCGCCGGCCTCCACCCGCCATCCGACCTCCGCCGCTGCAAGTCCTTCTCCTACTACGCCCGCTCCTCATCCTACTTGGAGCCGCACCCGCAGCAGGATGCTCTAGTCCTGCCCGATGCTGCTGATGCTCCAACCAACACCAAGCTCGCCTTGGGCTCCCTGGGCAAGCGCTGGCAGGAATGGCGTCGCAAGTCCAAGCTCAAGCACCACCACCCGCCCCCCGCCACCGCCACCGACCCCGCGCTGCTGGCCCGCCGCTCCTGCGACGCTTTCTCCACCCGCACCATGCTGGACGAGCCCCGCGCGTCCTACCATCCCACGCTCTTCGTTCCACGCTCCGACGACCAGATCCCCGTGGAGGAGGAGGAGCGAGCTTACGTGCCCGGCGGCTCCGCCCAGACAAGGGACTACTACCTCGACTCCTCCAGCTCCAGCAGGAGGCGCCGGAGCGTCGACCGCAAGTCCTCCTCCGACGCCGGCGACCAAATCCCCAGGATGGTGGCCGCGGCTGCCAATGCCAGGGTTTCACCGGCCACAGAGCTGTACCACCAGCCCCACACGTTCCACTATCACCAGCCAAGCTTCGAGCCGCCGCCATTATTGGCCCGGGAACGACAAGAGGCAAAGAGCAAGCCTAAGAACAAGGGGATCAAGGGGTGGAGCATCTGGGGCCTCCTGCACAAGAAGAGCAGCACCACCAACAGTGTGGGTGCCACTGCCAGTGCGTTCGCCGGCGAGGCACGGGCGGCGCCACCGGAGCTCCGGGCAAGGGGTTACGACGGCCAGATGCTCCGGTGCAACAGCAGCGTCAGCGCAAGAAGCTCATTCAGTGGAATTGGAAGCTCATTCAATGGCGGCAGGTTGGGGATGAGGAGGGCAGATGAAGTTTTGCTTGAGAGGAATTTCAGCGCCAGGTACTCTTCGTCTTCCTCCTGCAGGTATCAGTTTCACAAGGATGATTACTCCAACTCCATTGCCAACAATTCTGGAGCTGGAGCTGGAAGCAGGCCTCCTCGTTCCTCCACCTTGCCGAGGACCTCACTTGGACTCTACTACTACTGAACTCAATTTTATTATTATTACCCTTAGCCGCCCTAAATCTCATCAATCAAAAATTATTAGTGTGCATAGCATAGCAGCTTATATATACTTGTTGCAGTTTTACAACTCAACTGGTGATTGCCTCCACCACGTACGGGTGCATTATACCTTACTTAATTTACACTAGTACACCCTTTTGTTTATTAATCTCCTCCAACCACGACATATGCATGTTTCTTCTTTCATCCATTCAGTCCCAGACTCAAGCCTGTCTCATAATCTCATATGCTTCAAATCAGCCATG ] [-] EMBL CB652562 [ GGTGGCCGCGGCTGCCAATGCCAGGGTTTCACCGGCCACAGAGCTGTACCACCAGCCCCACACGTTCCACTATCACCAGCCAAGCTTCGAGCCGCCGCCATTATTGGCCCGGGAACGACAAGAGGCAAAGAGCAAGCCTAAGAACAAGGGGATCAAGGGGTGGAGCATCTGGGGCCTCCTGCACAAGAAGAGCAGCACCACCAACAGTGTGGGTGCCACTGCCAGTGCGTTCGCCGGCGAGGCACGGGCGGCGCCACCGGAGCTCCGGGCAAGGGGTTACGACGGCCAGATGCTCCGGTGCAACAGCAGCGTCAGCGCAAGAAGCTCATTCAGTGGAATTGGAAGCTCATTCAATGGCGGCAGGTTGGGGATGAGGAGGGCAGATGAAGTTTTGCTTGAGAGGAATTTCAGCGCCAGGTACTCTTCGTCTTCCTCCTGCAGGTATCAGTTTCACAAGGATGATTACTCCAACTCCATTGCCAACAATTTTGGAGCTGGAGCTGGAAGCAGGCCTCCTCGTTCCTCCACCTTGCCGAGGACCTCACTTGGACTCTACTACTACTGAACTCAATTTTATTATTATTACCCTTAGCCGCCCTAAATCTCATCAATCAAAAATTGTTAGTGTGCATAGCATAGCAGCTTATATATACTTGTTGCAGTTTTACAACTCAACTGGTGATTGCCTCCAAAGGGTACGGGTGCATTATCCCTTc ] consensusID : consensus_7502#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 256 fasta sequence [TCTACTACTACTGAACTCAATTTTATTATTATTACCCTTAGCCGCCCTAAATCTCATCAATCAAAAATTATTAGTGTGCATAGCATAGCAGCTTATATATACTTGTTGCAGTTTTACAACTCAACTGGTGATTGCCTCCACCACGTACGGGTGCATTATACCTTACTTAATTTACACTAGTACACCCTTTTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU083403 [TCTACTACTACTGAACTCAATTTTATTATTATTACCCTTAGCCGCCCTAAATCTCATCAATCAAAAATTATTAGTGTGCATAGCATAGCAGCTTATATATACTTGTTGCAGTTTTACAACTCAACTGGTGATTGCCTCCACCACGTACGGGTGCATTATACCTTACTTAATTTACACTAGTACACCCTTTTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7502#0 AGAGAAAGGGAAAAAGGGAAAAGAAGAAGCAGCAGCAGCTCAAGACTCAACTCAAGTAGA 60 consensus_7502#1 ------------------------------------------------------------ consensus_7502#0 AGAAGAAGAATAGGGAGAGAGAGAGACCATCGATCGATCTGTCTCTTTTGCCTGCTCTGC 120 consensus_7502#1 ------------------------------------------------------------ consensus_7502#0 TCCTCTTGTTTTCTTTTGCCTTGTTTGCCTCCTCTGCAACGAACGCAGACCTAGCAGCAT 180 consensus_7502#1 ------------------------------------------------------------ consensus_7502#0 GCATATTCAGTCAAGAGTTTAATTGCAAGAAGAAGAAGAAGAAGAAGAAATCTACTACTA 240 consensus_7502#1 ------------------------------------------------------------ consensus_7502#0 GTCCAGTTGCAGTTGCAGAGGCATATTGTGGTTGGATAATGGAGACGGTGTCGGTGTGCG 300 consensus_7502#1 ------------------------------------------------------------ consensus_7502#0 GGCTCCACCCGGGCGTGGCGGTGACGGGGTTCTGCCCGGCCTGCCTCCGCGACCGCCTCG 360 consensus_7502#1 ------------------------------------------------------------ consensus_7502#0 CCGGCCTCCACCCGCCATCCGACCTCCGCCGCTGCAAGTCCTTCTCCTACTACGCCCGCT 420 consensus_7502#1 ------------------------------------------------------------ consensus_7502#0 CCTCATCCTACTTGGAGCCGCACCCGCAGCAGGATGCTCTAGTCCTGCCCGATGCTGCTG 480 consensus_7502#1 ------------------------------------------------------------ consensus_7502#0 ATGCTCCAACCAACACCAAGCTCGCCTTGGGCTCCCTGGGCAAGCGCTGGCAGGAATGGC 540 consensus_7502#1 ------------------------------------------------------------ consensus_7502#0 GTCGCAAGTCCAAGCTCAAGCACCACCACCCGCCCCCCGCCACCGCCACCGACCCCGCGC 600 consensus_7502#1 ------------------------------------------------------------ consensus_7502#0 TGCTGGCCCGCCGCTCCTGCGACGCTTTCTCCACCCGCACCATGCTGGACGAGCCCCGCG 660 consensus_7502#1 ------------------------------------------------------------ consensus_7502#0 CGTCCTACCATCCCACGCTCTTCGTTCCACGCTCCGACGACCAGATCCCCGTGGAGGAGG 720 consensus_7502#1 ------------------------------------------------------------ consensus_7502#0 AGGAGCGAGCTTACGTGCCCGGCGGCTCCGCCCAGACAAGGGACTACTACCTCGACTCCT 780 consensus_7502#1 ------------------------------------------------------------ consensus_7502#0 CCAGCTCCAGCAGGAGGCGCCGGAGCGTCGACCGCAAGTCCTCCTCCGACGCCGGCGACC 840 consensus_7502#1 ------------------------------------------------------------ consensus_7502#0 AAATCCCCAGGATGGTGGCCGCGGCTGCCAATGCCAGGGTTTCACCGGCCACAGAGCTGT 900 consensus_7502#1 ------------------------------------------------------------ consensus_7502#0 ACCACCAGCCCCACACGTTCCACTATCACCAGCCAAGCTTCGAGCCGCCGCCATTATTGG 960 consensus_7502#1 ------------------------------------------------------------ consensus_7502#0 CCCGGGAACGACAAGAGGCAAAGAGCAAGCCTAAGAACAAGGGGATCAAGGGGTGGAGCA 1020 consensus_7502#1 ------------------------------------------------------------ consensus_7502#0 TCTGGGGCCTCCTGCACAAGAAGAGCAGCACCACCAACAGTGTGGGTGCCACTGCCAGTG 1080 consensus_7502#1 ------------------------------------------------------------ consensus_7502#0 CGTTCGCCGGCGAGGCACGGGCGGCGCCACCGGAGCTCCGGGCAAGGGGTTACGACGGCC 1140 consensus_7502#1 ------------------------------------------------------------ consensus_7502#0 AGATGCTCCGGTGCAACAGCAGCGTCAGCGCAAGAAGCTCATTCAGTGGAATTGGAAGCT 1200 consensus_7502#1 ------------------------------------------------------------ consensus_7502#0 CATTCAATGGCGGCAGGTTGGGGATGAGGAGGGCAGATGAAGTTTTGCTTGAGAGGAATT 1260 consensus_7502#1 ------------------------------------------------------------ consensus_7502#0 TCAGCGCCAGGTACTCTTCGTCTTCCTCCTGCAGGTATCAGTTTCACAAGGATGATTACT 1320 consensus_7502#1 ------------------------------------------------------------ consensus_7502#0 CCAACTCCATTGCCAACAATTCTGGAGCTGGAGCTGGAAGCAGGCCTCCTCGTTCCTCCA 1380 consensus_7502#1 ------------------------------------------------------------ consensus_7502#0 CCTTGCCGAGGACCTCACTTGGACTCTACTACTACTGAACTCAATTTTATTATTATTACC 1440 consensus_7502#1 ------------------------TCTACTACTACTGAACTCAATTTTATTATTATTACC 36 ************************************ consensus_7502#0 CTTAGCCGCCCTAAATCTCATCAATCAAAAATTATTAGTGTGCATAGCATAGCAGCTTAT 1500 consensus_7502#1 CTTAGCCGCCCTAAATCTCATCAATCAAAAATTATTAGTGTGCATAGCATAGCAGCTTAT 96 ************************************************************ consensus_7502#0 ATATACTTGTTGCAGTTTTACAACTCAACTGGTGATTGCCTCCACCACGTACGGGTGCAT 1560 consensus_7502#1 ATATACTTGTTGCAGTTTTACAACTCAACTGGTGATTGCCTCCACCACGTACGGGTGCAT 156 ************************************************************ consensus_7502#0 TATACCTTACTTAATTTACACTAGTACACCCTTTTGTTTATTAATCTCCTCCAACCACGA 1620 consensus_7502#1 TATACCTTACTTAATTTACACTAGTACACCCTTTTGTTTAAAAAAAAAAAAAAAAAAAAA 216 **************************************** ** ** * * consensus_7502#0 CATATGCATGTTTCTTCTTTCATCCATTCAGTCCCAGACTCAAGCCTGTCTCATAATCTC 1680 consensus_7502#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------------- 256 * * * * * * * * consensus_7502#0 ATATGCTTCAAATCAGCCATGTGTTGGATTGAAAAGAAAAACGCTTTTCCCTTCATCAGT 1740 consensus_7502#1 ------------------------------------------------------------ consensus_7502#0 TTGTAAGGCTCCTTTTCTTTCATATACTGATATACAACTATGCAATGAAGCTCATG 1796 consensus_7502#1 -------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||