These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7505#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 830 fasta sequence [ACGCCGCGCTCGATCTCTCGCCGCCATGGCCCGCCTCGCCGTCGCCGCCGCACTCCTCCTCGTCGCCCTCTGCCGCGTCGTCCACGGCGAGGCCGATCAGGAGACCGCCCCCGCCTACGCCAACCGTGAAGCCTACGTCGAGCACAATGGTGGTGACGCCGCCGGCACGTCCGTCGCCATCGTCCCGCCCTACCTCGACGCCGCCGCCGCCGCCCGTGACGAGCCCGCGGCGGCGGCGGCGAGCCCCGAGGGGCCTGTGATCCCGGTCGACGACGACGCGGCGGACCAGCAGGGCTTCCTCCGCTTCCCCTGCCGCTACCACTGCCGCTACCGCCACCACATGCGCCACGGCGGCCATCGCCATGGGGAGGGATTCCATGGCAAGGAGGAGAAGCAGCAGCTGGTGTTCGAGATGCCAGTCGAGCCGGCGACCCGCGGCGAGGAGCGCAGGGAGGAGGAGGAGGGGGTGGTTCTCCCCGTCGCGGAGCCAGATCCGGACTCGCGCCGCCAGTATGCCGCCGTAGCCGCCGCCGAGGAGGAAGACGAGGATGAGATGGCGAGGCTCCACCACGGCCGCCGCTCCCACCACCACCATCATCGCCACCACCATCATCACCACGACGAGAACGAGGAGGACGAGCACGAGCAGGCCGACGAGGCTTCGCCCGCCGTGGAGCGGTTGATCAGCTTCCACCGCCGCCGCCACCACCACCACCACCACGAAGACGACCACGAGCAGCGCGAGGAGGGTGCGCCCATGAAGCGGTTCCGCCACCACCACGAGGAGGAGGAGGAGTCCGAGATGAGGACCAAGCGNTTNCACCACCACC] [+] EMBL AK101438 [ACGCCGCGCTCGATCTCTCGCCGCCATGGCCCGCCTCGCCGTCGCCGCCGCACTCCTCCTCGTCGCCCTCTGCCGCGTCGTCCACGGCGAGGCCGATCAGGAGACCGCCCCCGCCTACGCCAACCGTGAAGCCTACGTCGAGCACAATGGTGGTGACGCCGCCGGCACGTCCGTCGCCATCGTCCCGCCCTACCTCGACGCCGCCGCCGCCGCCCGTGACGAGCCCGCGGCGGCGGCGGCGAGCCCCGAGGGGCCTGTGATCCCGGTCGACGACGACGCGGCGGACCAGCAGGGCTTCCTCCGCTTCCCCTGCCGCTACCACTGCCGCTACCGCCACCACATGCGCCACGGCGGCCATCGCCATGGGGAGGGATTCCATGGCAAGGAGGAGAAGCAGCAGCTGGTGTTCGAGATGCCAGTCGAGCCGGCGACCCGCGGCGAGGAGCGCAGGGAGGAGGAGGAGGGGGTGGTTCTCCCCGTCGCGGAGCCAGATCCGGACTCGCGCCGCCAGTATGCCGCCGTAGCCGCCGCCGAGGAGGAAGACGAGGATGAGATGGCGAGGCTCCACCACGGCCGCCGCTCCCACCACCACCATCATCGCCACCACCATCATCACCACGACGAGAACGAGGAGGACGAGCACGAGCAGGCCGACGAGGCTTCGCCCGCCGTGGAGCGGTTGATCAGCTTCCACCGCCGCCGCCACCACCACCACCACCACGAAGACGACCACGAGCAGCGCGAGGAGGGTGCGCCCATGAAGCGGTTCCGCCACCACCACGAGGAGGAGGAGGAGTCCGAGA ] [+] EMBL AK103464 [ACGCCGCGCTCGATCTCTCGCCGCCATGGCCCGCCTCGCCGTCGCCGCCGCACTCCTCCTCGTCGCCCTCTGCCGCGTCGTCCACGGCGAGGCCGATCAGGAGACCGCCCCCGCCTACGCCAACCGTGAAGCCTACGTCGAGCACAATGGTGGTGACGCCGCCGGCACGTCCGTCGCCATCGTCCCGCCCTACCTCGACGCCGCCGCCGCCGCCCGTGACGAGCCCGCGGCGGCGGCGGCGAGCCCCGAGGGGCCTGTGATCCCGGTCGACGACGACGCGGCGGACCAGCAGGGCTTCCTCCGCTTCCCCTGCCGCTACCACTGCCGCTACCGCCACCACATGCGCCACGGCGGCCATCGCCATGGGGAGGGATTCCATGGCAAGGAGGAGAAGCAGCAGCTGGTGTTCGAGATGCCAGTCGAGCCGGCGACCCGCGGCGAGGAGCGCAGGGAGGAGGAGGAGGGGGTGGTTCTCCCCGTCGCGGAGCCAGATCCGGACTCGCGCCGCCAGTATGCCGCCGTAGCCGCCGCCGAGGAGGAAGACGAGGATGAGATGGCGAGGCTCCACAACGGCCGCCGCTCCCACCACCACCATCATCGCCACCACCATCATCACCACGACGAGAACGAGGAGGACGAGCACGAGCAGGCCGACGAGGCTTCGCCCGCCGTGGAGCGGTTGATCAGCTTCCACCGCCGCCGCCACCACCACCACCACCACGAAGACGACCACGAGCAGCGCGAGGAGGGTGCGCCCATGAAGCGGTTCCGCCACCACCACGAGGAGGAGGAGGAGTCCGAGA ] [+] EMBL OSR25551A [ GAGAACGAGGAGGACGAGCACGAGCAGGCCGACGAGGCTTCGCCCGCCGTGGAGCGGTTGATCAGCTTCCACCGCCGCCGCCACCACCACCACCACCACGAAGACGACCACGAGCAGCGCGAGGAGGGTGCGCCCATGAAGCGGTTCCGCCACCACCACGAGGAGGAGGAGGAGTCCGAGATGAGGACCAAGCGNTTNCACCACCACC] consensusID : consensus_7505#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence [TCATTCTTTGCTACTCCGCATTGTTATTNANTCANTCTTNTCTTANTCTCTTATTATGTAATATTATAGNTAGGCTCCNTNGTATATAATATACGGTNCTATATGTCCTCACCAGTCTACATCTACTACTATATCACACTATCAACCCCTCACCAACGCACGCCCTCTATCCCACATCCTCAACAGCCACCACCTTCGAAACCGTAGCGAACCACACGTACCTTTCGTCGAACAGACTCTCAACGGCTCTACCTACGGTGTCGCGGTTGTCAGGGTTCACACCCCCCGTCCCCCCCCCCCCCCACCACGAAGACGCCCACGAGCAGCGCGAGGAGGGTGCGCCCATGAAGCGGTTCCGCCACCCCCACGAGGAGGAGGAGGAGTCCGAGAT] [-] EMBL CA757651 [TCATTCTTTGCTACTCCGCATTGTTATTNANTCANTCTTNTCTTANTCTCTTATTATGTAATATTATAGNTAGGCTCCNTNGTATATAATATACGGTNCTATATGTCCTCACCAGTCTACATCTACTACTATATCACACTATCAACCCCTCACCAACGCACGCCCTCTATCCCACATCCTCAACAGCCACCACCTTCGAAACCGTAGCGAACCACACGTACCTTTCGTCGAACAGACTCTCAACGGCTCTACCTACGGTGTCGCGGTTGTCAGGGTTCACACCCCCCGTCCCCCCCCCCCCCCACCACGAAGACGCCCACGAGCAGCGCGAGGAGGGTGCGCCCATGAAGCGGTTCCGCCACCCCCACGAGGAGGAGGAGGAGTCCGAGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7505#0 ACGCCGCGCTCGATCTCTCGCCGCCATGGCCCGCCTCGCCGTCGCCGCCGCACTCCTCCT 60 consensus_7505#1 ------------------------------------------------------------ consensus_7505#0 CGTCGCCCTCTGCCGCGTCGTCCACGGCGAGGCCGATCAGGAGACCGCCCCCGCCTACGC 120 consensus_7505#1 ------------------------------------------------------------ consensus_7505#0 CAACCGTGAAGCCTACGTCGAGCACAATGGTGGTGACGCCGCCGGCACGTCCGTCGCCAT 180 consensus_7505#1 ------------------------------------------------------------ consensus_7505#0 CGTCCCGCCCTACCTCGACGCCGCCGCCGCCGCCCGTGACGAGCCCGCGGCGGCGGCGGC 240 consensus_7505#1 ------------------------------------------------------------ consensus_7505#0 GAGCCCCGAGGGGCCTGTGATCCCGGTCGACGACGACGCGGCGGACCAGCAGGGCTTCCT 300 consensus_7505#1 ------------------------------------------------------------ consensus_7505#0 CCGCTTCCCCTGCCGCTACCACTGCCGCTACCGCCACCACATGCGCCACGGCGGCCATCG 360 consensus_7505#1 ------------------------------------------------------------ consensus_7505#0 CCATGGGGAGGGATTCCATGGCAAGGAGGAGAAGCAGCAGCTGGTGTTCGAGATGCCAGT 420 consensus_7505#1 ---------------------------------TCATTCTTTGCTACTCCGCATTGTTAT 27 ** ** * ** ** * consensus_7505#0 CGAGCCGGCGACCCGCGGCGAGGAGCGCAGGGAGGAGGAGGAGGGGGTGGTTCTCCCCGT 480 consensus_7505#1 TNANTCA---NTCTTNTCTTANTCTCTTATTATGTAATATTATAGNTAGGCTCCNTNGTA 84 * * * * * * * * * * * ** ** consensus_7505#0 CGCGGAGCCAGATCCGGACTCGCGCCGCCAGTATGCCGCCGTAGCCGCCGCCGAGGAGGA 540 consensus_7505#1 TATAATATACGGTNCTATATGTCCTCACCAGT------CTACATCTACT----------- 127 * * * * * * ***** * * * * consensus_7505#0 AGACGAGGATGAGATGGCGAGGCTCCACCACGGCCGCCGCTCCCACCACCACCATCATC- 599 consensus_7505#1 --ACTATATCACACTATCAACCCCTCACCAACGCACGCCCTCTATCCCACATCCTCAACA 185 ** * * * * * ***** ** * *** ** ** * *** * consensus_7505#0 GCCACCACCATCATCACCACGACGAGAACGAGGAGGACGAGCACGAGCAGGCCGACGA-G 658 consensus_7505#1 GCCACCACCTTCGAAACCGTAGCGAACCACACGTACCTTTCGTCGAACAGACTCTCAACG 245 ********* ** *** *** * * *** *** * * * * consensus_7505#0 GCTTCGCCCGCCGTGGAGCGGTTGATCAGCTTCCACCGCCGCCG-CCACCACCACCACCA 717 consensus_7505#1 GCTCTACCTACGGTGTCGCGGTTG-TCAGGGTTCACACCCCCCGTCCCCCCCCCCCCCCA 304 *** ** * *** ******* **** * *** ** *** ** ** ** ** *** consensus_7505#0 CCACGAAGACGACCACGAGCAGCGCGAGGAGGGTGCGCCCATGAAGCGGTTCCGCCACCA 777 consensus_7505#1 CCACGAAGACGCCCACGAGCAGCGCGAGGAGGGTGCGCCCATGAAGCGGTTCCGCCACCC 364 *********** *********************************************** consensus_7505#0 CCACGAGGAGGAGGAGGAGTCCGAGATGAGGACCAAGCGNTTNCACCACCACC 830 consensus_7505#1 CCACGAGGAGGAGGAGGAGTCCGAGAT-------------------------- 391 *************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||