These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_752#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1018 fasta sequence [CATATTCAGTTGGTTATATGGTCTGGTCGGTTCATGCGCACATCTTGTGATGGTAAATTCATCGTGGACAAGATCCCATATTGAAAATATTTGGAGGATACCAGAGCGTACTAGGAGGGTATACCCTCCATGTGATACTTCTGCCCTGCAGATGCTTCCACTGGAAAGATCAACTACACCTCCTATTCTTATATCAGTTGCACAGTTTCGGCCAGAAAAGGCCCATGGACTTCAGCTTGAGGCATTTGCAATTGCTCTTAAGAAGCTAAGTCCAGAATTTCCTAAGCCAAAGCTTCAATTTGTTGGAAGCTGTCGGAATAAAGAGGATCTGGAAAGATTGCAAAAGCTTAAAGACAGATCCACTGAACTACACATAGATGAGCTTGTGGAGTTCCACAAGGATATCTCTTACAGGGACTTGGTACAGCTTCTAGGTGGTGCTGTTGCTGGGCTCCATTCAATGACAGATGAGCATTTTGGGATAAGTGTTGTTGAATACATGGCTGCTGGTGCTATTCCAATTGCCCATAAATCGGCAGGACCAATGATGGACATTGTGCTAGATGAGGATGGCCAACAGACAGGATTTCTAGCCTCCGAGAAGGAAGAATATGCCGAGGCAATTGTCAAGGTCTTGCGGATGCCGGAGGCAGAGAGGCATGAGATGGCAACAGCAGCACGAAAACGCGCTCAAAGATTTTCTGAGCATAGGTTCCATGAAGATTTCACCGATGCAGTTCGCCCAATTTTGTCAGCAACATGAGCTTGACAAGCTAAGGAGTCTCCTCTTAACTGTCTGAAACACTAACAAGTTTCACATGATATGGTGACTATGAAGCTAACTGGCCAATTACTGGGTCTTGCATGCGGCATCCGTTTAAAGTGCGAGTTTTGCTTGAGTTTCCTTTTCTCTGTATTACTTACATAGAGGTGCATCATGTACAGTACAGACTACAAACCACAAAAATGATAGATTGATGACTTTGTTTGGCTTTATCTACCGTTTGGATTTGCTTAG] [+] EMBL AK110753 [CATATTCAGTTGGTTATATGGTCTGGTCGGTTCATGCGCACATCTTGTGATGGTAAATTCATCGTGGACAAGATCCCATATTGAAAATATTTGGAGGATACCAGAGCGTACTAGGAGGGTATACCCTCCATGTGATACTTCTGCCCTGCAGATGCTTCCACTGGAAAGATCAACTACACCTCCTATTCTTATATCAGTTGCACAGTTTCGGCCAGAAAAGGCCCATGGACTTCAGCTTGAGGCATTTGCAATTGCTCTTAAGAAGCTAAGTCCAGAATTTCCTAAGCCAAAGCTTCAATTTGTTGGAAGCTGTCGGAATAAAGAGGATCTGGAAAGATTGCAAAAGCTTAAAGACAGATCCACTGAACTACACATAGATGAGCTTGTGGAGTTCCACAAGGATATCTCTTACAGGGACTTGGTACAGCTTCTAGGTGGTGCTGTTGCTGGGCTCCATTCAATGACAGATGAGCATTTTGGGATAAGTGTTGTTGAATACATGGCTGCTGGTGCTATTCCAATTGCCCATAAATCGGCAGGACCAATGATGGACATTGTGCTAGATGAGGATGGCCAACAGACAGGATTTCTAGCCTCCGAGAAGGAAGAATATGCCGAGGCAATTGTCAAGGTCTTGCGGATGCCGGAGGCAGAGAGGCATGAGATGGCAACAGCAGCACGAAAACGCGCTCAAAGATTTTCTGAGCATAGGTTCCATGAAGATTTCACCGATGCAGTTCGCCCAATTTTGTCAGCAACATGAGCTTGACAAGCTAAGGAGTCTCCTCTTAACTGTCTGAAACACTAACAAGTTTCACATGATATGGTGACTATGAAGCTAACTGGCCAATTACTGGGTCTTGCATGCGGCATCCGTTTAAAGTGCGAGTTTTGCTTGAGTTTCCTTTTCTCTGTATTACTTACATAGAGGTGCATCATGTACAGTACAGACTACAAACCACAAAAATGATAGATTGATGACTTTGTTTGGCTTTATCTACCGTTTGGATTTGCTTAG] consensusID : consensus_752#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence [CTGTGGGGCCGGTTTTTGAGGGGGGCCTTGTTTGTGGGCCCCCCTTCCACTGGCGGGTGTCGCCTTTTGGGGATAAGCGGTTGTGGAATACATGGCTGGTGGGGGTTTTTCCCGTTGCCCATTAATCGGCGGGGCCCTGTGTGGGCCTTGTGTTTGATGGGGATGGCCCCCACCCAGGGTTTTTTGCCTCCCAGAAGGAAGATTTTGCCGGGGCAATTGTCAAGGTTTTTCGGATGCCGGGGGCAGAAAGGCTTTAAATGGCAACAGCAGCCCGAAAACGCGCTCAAAGATTTTTTGAGCATAGGTTCCCTGAAGATTTTCCCGGTGCGGTTTGCCCCATTTTGTTAGCACCCTTAGCTTGCCAAGCTTTGGGGTTTCCTTTTAACTGTTTGAAACCCTAACCAGTTTCCCCTGATTTGGGGGCTTTGAAGCTAACTGGCCCATTTTTGGGCCTTGCCTGCGGCATCCGTTTAAAGTGCGAGTTTTGCCTGAGTTTCCCTTTTTTTGTATTACTTACAAAGAGGGGCCTCATGTTCCGTTCCGGCTTCCAACCCCAAAAATGATAGATTGGGGGCTTTGTTTGGCTTTTTTTCCCGTTTGGGTTTGGTTAGTTGTCCCGTCAATGTTTCCGTTTGTTTTGCCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA759333 [CTGTGGGGCCGGTTTTTGAGGGGGGCCTTGTTTGTGGGCCCCCCTTCCACTGGCGGGTGTCGCCTTTTGGGGATAAGCGGTTGTGGAATACATGGCTGGTGGGGGTTTTTCCCGTTGCCCATTAATCGGCGGGGCCCTGTGTGGGCCTTGTGTTTGATGGGGATGGCCCCCACCCAGGGTTTTTTGCCTCCCAGAAGGAAGATTTTGCCGGGGCAATTGTCAAGGTTTTTCGGATGCCGGGGGCAGAAAGGCTTTAAATGGCAACAGCAGCCCGAAAACGCGCTCAAAGATTTTTTGAGCATAGGTTCCCTGAAGATTTTCCCGGTGCGGTTTGCCCCATTTTGTTAGCACCCTTAGCTTGCCAAGCTTTGGGGTTTCCTTTTAACTGTTTGAAACCCTAACCAGTTTCCCCTGATTTGGGGGCTTTGAAGCTAACTGGCCCATTTTTGGGCCTTGCCTGCGGCATCCGTTTAAAGTGCGAGTTTTGCCTGAGTTTCCCTTTTTTTGTATTACTTACAAAGAGGGGCCTCATGTTCCGTTCCGGCTTCCAACCCCAAAAATGATAGATTGGGGGCTTTGTTTGGCTTTTTTTCCCGTTTGGGTTTGGTTAGTTGTCCCGTCAATGTTTCCGTTTGTTTTGCCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_752#0 CATATTCAGTTGGTTATATGGTCTGGTCGGTTCATGCGCACATCTTGTGATGGTAAATTC 60 consensus_752#1 ------------------------------------------------------------ consensus_752#0 ATCGTGGACAAGATCCCATATTGAAAATATTTGGAGGATACCAGAGCGTACTAGGAGGGT 120 consensus_752#1 ------------------------------------------------------------ consensus_752#0 ATACCCTCCATGTGATACTTCTGCCCTGCAGATGCTTCCACTGGAAAGATCAACTACACC 180 consensus_752#1 ------------------------------------------------------------ consensus_752#0 TCCTATTCTTATATCAGTTGCACAGTTTCGGCCAGAAAAGGCCCATGGACTTCAGCTTGA 240 consensus_752#1 ------------------------------------------------------------ consensus_752#0 GGCATTTGCAATTGCTCTTAAGAAGCTAAGTCCAGAATTTCCTAAGCCAAAGCTTCAATT 300 consensus_752#1 ------------------------------------------------------------ consensus_752#0 TGTTGGAAGCTGTCGGAATAAAGAGGATCTGGAAAGATTGCAAAAGCTTAAAGACAGATC 360 consensus_752#1 ------------------------------------------------------------ consensus_752#0 CACTGAACTACACATAGATGAGCTTGTGGAGTTCCACAAGGATATCTCTTACAGGGACTT 420 consensus_752#1 -------------------------------------------------------CTGTG 5 * consensus_752#0 GGTACAGCTTCTAGGTGGTGC--TGTTGCTGGGCTCCATT--CAATGACAGATG--AGCA 474 consensus_752#1 GGGCCGGTTTTTGAGGGGGGCCTTGTTTGTGGGCCCCCCTTCCACTGGCGGGTGTCGCCT 65 ** * * ** * * ** ** **** ***** ** * ** ** * * ** * consensus_752#0 TTTTGGGATAAGTG-TTGTTGAATACATGGCTGCTGGTG-CTATTCCAATTGCCCATAAA 532 consensus_752#1 TTTGGGGATAAGCGGTTGTGGAATACATGGCTGGTGGGGGTTTTTCCCGTTGCCCATTAA 125 *** ******** * **** ************* *** * * **** ******** ** consensus_752#0 TCGGCAGGACCAATGATGGACATTGTGCTAGATGAGGATGGCCAACAGACAGGATTTCTA 592 consensus_752#1 TCGGCGGGGCCCTGTGTGGGCCTTGTGTTTGATGGGGATGGCCCCCACCCAGGGTTTTTT 185 ***** ** ** *** * ***** * **** ******** ** **** *** * consensus_752#0 GCCTCCGAGAAGGAAGAATATGCCGAGGCAATTGTCAAGGTCTTGCGGATGCCGGAGGCA 652 consensus_752#1 GCCTCCCAGAAGGAAGATTTTGCCGGGGCAATTGTCAAGGTTTTTCGGATGCCGGGGGCA 245 ****** ********** * ***** *************** ** ********** **** consensus_752#0 GAGAGGCATGAGATGGCAACAGCAGCACGAAAACGCGCTCAAAGATTTTCTGAGCATAGG 712 consensus_752#1 GAAAGGCTTTAAATGGCAACAGCAGCCCGAAAACGCGCTCAAAGATTTTTTGAGCATAGG 305 ** **** * * ************** ********************** ********** consensus_752#0 TTCCATGAAGATTTCACCGATGCAGTTCGCCCAATTTTGTCAGCAACATGAGCTTGACAA 772 consensus_752#1 TTCCCTGAAGATTTTCCCGGTGCGGTTTGCCCCATTTTGTTAGCACCCTTAGCTTGCCAA 365 **** ********* *** *** *** **** ******* **** * * ****** *** consensus_752#0 GCTAAGGAGTCTCCTCTTAACTGTCTGAAACACTAACAAGTTTCACATGATATGGTGACT 832 consensus_752#1 GCTTTGGGGTTTCCTTTTAACTGTTTGAAACCCTAACCAGTTTCCCCTGATTTGGGGGCT 425 *** ** ** **** ******** ****** ***** ****** * **** *** * ** consensus_752#0 ATGAAGCTAACTGGCCAATTACTGGGTCTTGCATGCGGCATCCGTTTAAAGTGCGAGTTT 892 consensus_752#1 TTGAAGCTAACTGGCCCATTTTTGGGCCTTGCCTGCGGCATCCGTTTAAAGTGCGAGTTT 485 *************** *** **** ***** *************************** consensus_752#0 TGCTTGAGTTTCCTTTTCTCTGTATTACTTACATAGAGGTGCATCATGTACAGTACAGAC 952 consensus_752#1 TGCCTGAGTTTCCCTTTTTTTGTATTACTTACAAAGAGGGGCCTCATGTTCCGTTCCGGC 545 *** ********* *** * ************* ***** ** ****** * ** * * * consensus_752#0 TACAAACCACAAAAATGATAGATTGATGACTTTGTTTGGCTTTATCTACCGTTTGGATTT 1012 consensus_752#1 TTCCAACCCCAAAAATGATAGATTGGGGGCTTTGTTTGGCTTTTTTTCCCGTTTGGGTTT 605 * * **** **************** * ************** * * ******** *** consensus_752#0 GCTTAG------------------------------------------------------ 1018 consensus_752#1 GGTTAGTTGTCCCGTCAATGTTTCCGTTTGTTTTGCCCCCAAAAAAAAAAAAAAAAAAAA 665 * **** consensus_752#0 ------------------- consensus_752#1 AAAAAAAAAAAAAAAAAAA 684 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||