These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7584#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 728 fasta sequence [TGGTCATTGCCTACCGGTAAACTCCCATACTTCCTTCTTTTGTTCGAGGGAGGCCATACATCTTCCTTCTTTGGTTGGATCCAGGTCAGAAAGTTATAGGGTGTGCGCAAACAAGTCTGAATTAATAAGAAGGGGCAGTACACTACCCATTTGGGAATTGGCAAATCACAGTCATACTTCTTAGAGTGGGGTGGAGCACCAGCACCTTAAGCTGCACCAGTATCTTAGTAAGATAGACACCGATTAAGAAACCGAGAAGTCTAGATTATGGGGACTCTATAAGTTTTTCTCAGATTTCCTGTCTCTTCCTTCTCCCATCTCTTCCTCTACCTCCTCTGGATCCGCCCCCTCCCCTCTCCTCCCCACTTCTTAGGCGCTCTCCTCCCCACTTCTCAGGCGGCGGCGCCCGGGCGGCCGCGGAGGCGGCCTCATGCGCCCTCATGCGGTAGCTGGGCGGCGAGGTACAACGCGCGGTGGGCGGCGGGGCAGCGCGTGGCGTGGGCGGCGGGGCCGCGCACGGGGCGGCAGCGCGCCGGCTCTCCTCTCTTTTTTTTTTAATAATTTGTGATTGAGATATGTATAATTTCTTTTTTAGAATTTGTGATTGATTGCATGGATCTGAGTTGTATAATTGTGATGCATTTGATTTGTGTGTAATTTTTTTAAGATTTGTGATCTATTTGATTTGTGTGTAAGTAACTTAGGATTTGTATTATGATGTGAATGAT] [+] EMBL AK107728 [TGGTCATTGCCTACCGGTAAACTCCCATACTTCCTTCTTTTGTTCGAGGGAGGCCATACATCTTCCTTCTTTGGTTGGATCCAGGTCAGAAAGTTATAGGGTGTGCGCAAACAAGTCTGAATTAATAAGAAGGGGCAGTACACTACCCATTTGGGAATTGGCAAATCACAGTCATACTTCTTAGAGTGGGGTGGAGCACCAGCACCTTAAGCTGCACCAGTATCTTAGTAAGATAGACACCGATTAAGAAACCGAGAAGTCTAGATTATGGGGACTCTATAAGTTTTTCTCAGATTTCCTGTCTCTTCCTTCTCCCATCTCTTCCTCTACCTCCTCTGGATCCGCCCCCTCCCCTCTCCTCCCCACTTCTTAGGCGCTCTCCTCCCCACTTCTCAGGCGGCGGCGCCCGGGCGGCCGCGGAGGCGGCCTCATGCGCCCTCATGCGGTAGCTGGGCGGCGAGGTACAACGCGCGGTGGGCGGCGGGGCAGCGCGTGGCGTGGGCGGCGGGGCCGCGCACGGGGCGGCAGCGCGCCGGCTCTCCTCTCTTTTTTTTTTAATAATTTGTGATTGAGATATGTATAATTTCTTTTTTAGAATTTGTGATTGATTGCATGGATCTGAGTTGTATAATTGTGATGCATTTGATTTGTGTGTAATTTTTTTAAGATTTGTGATCTATTTGATTTGTGTGTAAGTAACTTAGGATTTGTATTATGATGTGAATGAT] consensusID : consensus_7584#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 290 fasta sequence [TCACATCCGACGGCCGGCGTCTGCGGGCAGGTGGCCAGCGGGCGGCGGGGCAGCACGCGCGGCGGGCGGCGGGGCTGCGCATAGGGCGGCAGCGCGCCAACCATGGTGAGTGGCGGCAGGCGGGCGGCAGTGCACCGGTTCTCCTCTCCTTTTTTTTAATAATTTGTGATTGAGAGATGTATAATTTCTTTTATTACAATTTGTGATTCATTGGATGGATCTGAGATGTGTAATCGATTTGTGATGCATTTAATTTGTGTGTAATTTTTTTAAAATTTGTGATGTAAAAA] [+] EMBL AU076062 [TCACATCCGACGGCCGGCGTCTGCGGGCAGGTGGCCAGCGGGCGGCGGGGCAGCACGCGCGGCGGGCGGCGGGGCTGCGCATAGGGCGGCAGCGCGCCAACCATGGTGAGTGGCGGCAGGCGGGCGGCAGTGCACCGGTTCTCCTCTCCTTTTTTTTAATAATTTGTGATTGAGAGATGTATAATTTCTTTTATTACAATTTGTGATTCATTGGATGGATCTGAGATGTGTAATCGATTTGTGATGCATTTAATTTGTGTGTAATTTTTTTAAAATTTGTGATGTAAAAA] [+] EMBL AU076155 [TCACATCCGACGGCCGGCGTCTGCGGGCAGGTGGCCAGCGGGCGGCGGGGCAGCACGCGCGGCGGGCGGCGGGGCTGCGCATAGGGCGGCA NGCGCCAACCATGGTGAGTGGCGGCAGGCGGGCGGCAGTGCACCGGTTCTCCTCTCCTTTTTTTTAATAATTTGTGATTGAGAGATGTATAATTTCTTTTATTACAATTTGTGATTCATTGGATGGATCTGAGATGTGTAATCGATTTGTGATGCATTTAATTTGTGTGTAATTTTTTTAAAATTTGTGATGTAAAAA] consensusID : consensus_7584#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 206 fasta sequence [GNNNNNNGAGGCAGCCTCGCNNNNNNNGGCGGCGCGGAGNNGAAGGCAGCCTCACGCGCCCTCATGTGGTGGCCGGGCGGCGAGGCACAGCGCGTGGCGTGGGCGGCGGGGCCGCGCACGGGGCGGCAGCGCGCCGGTTCTCCTCTTTTTTTTTATAATTTGTGATTGAGAGATGTATAATTTCTTTTTTAGAATTTGTGATTCAT] [-] EMBL CF196641 [GNNNNNNGAGGCAGCCTCGCNNNNNNNGGCGGCGCGGAGNNGAAGGCAGCCTCACGCGCCCTCATGTGGTGGCCGGGCGGCGAGGCACAGCGCGTGGCGTGGGCGGCGGGGCCGCGCACGGGGCGGCAGCGCGCCGGTTCTCCTCTTTTTTTTTATAATTTGTGATTGAGAGATGTATAATTTCTTTTTTAGAATTTGTGATTCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7584#0 TGGTCATTGCCTACCGGTAAACTCCCATACTTCCTTCTTTTGTTCGAGGGAGGCCATACA 60 consensus_7584#2 ------------------------------------------------------------ consensus_7584#1 ------------------------------------------------------------ consensus_7584#0 TCTTCCTTCTTTGGTTGGATCCAGGTCAGAAAGTTATAGGGTGTGCGCAAACAAGTCTGA 120 consensus_7584#2 ------------------------------------------------------------ consensus_7584#1 ------------------------------------------------------------ consensus_7584#0 ATTAATAAGAAGGGGCAGTACACTACCCATTTGGGAATTGGCAAATCACAGTCATACTTC 180 consensus_7584#2 ------------------------------------------------------------ consensus_7584#1 ------------------------------------------------------------ consensus_7584#0 TTAGAGTGGGGTGGAGCACCAGCACCTTAAGCTGCACCAGTATCTTAGTAAGATAGACAC 240 consensus_7584#2 ------------------------------------------------------------ consensus_7584#1 ------------------------------------------------------------ consensus_7584#0 CGATTAAGAAACCGAGAAGTCTAGATTATGGGGACTCTATAAGTTTTTCTCAGATTTCCT 300 consensus_7584#2 ------------------------------------------------------------ consensus_7584#1 ------------------------------------------------------------ consensus_7584#0 GTCTCTTCCTTCTCCCATCTCTTCCTCTACCTCCTCTGGATCCGCCCCCTCCCCTCTCCT 360 consensus_7584#2 ------------------------------------------------------------ consensus_7584#1 ------------------------------------------------------------ consensus_7584#0 CCCCACTTCTTAGGCGCTCTCCTCCCCACTTCTCAGGCGGCGGCGCCCGGGCGGCCGCGG 420 consensus_7584#2 --------------GNNNNNNGAGGCAGCCTCGCNNNNNNNGGCG---GCGCGGAGNNGA 43 consensus_7584#1 ---------------TCACATCCGACGGCCG-GCGTCTGCGGGCAGGTGGCCAGCGGGCG 44 * * * *** * * * consensus_7584#0 AGGCGGCCTCATGCGCC-CTCATGCGGTAGCTGGGCGGCGAGGTACAACGCGCGGTGGGC 479 consensus_7584#2 AGGCAGCCTCACGCGCC-CTCATGTGGTGGCCGGGCGGCGAGGCACA------------- 89 consensus_7584#1 GCGGGGCAGCACGCGCGGCGGGCGGCGGGGCTGCGCATAGGGCGGCAGC----------- 93 * ** ** **** * * * ** * ** * * ** consensus_7584#0 GGCGGGGCAGCGCGTGGCGTGGGCGGCGGGGCCGCGCACGGGGCGGCAGCGCGCCGGCTC 539 consensus_7584#2 ---------GCGCGTGGCGTGGGCGGCGGGGCCGCGCACGGGGCGGCAGCGCGCCGGTTC 140 consensus_7584#1 ---------GCGCCAACCATGGTGAGTGGCGGCAGGC---GGGCGGCAGTGCACCGGTTC 141 **** * *** * ** * * ** ********* ** **** ** consensus_7584#0 TCCTCTCTTTTTTTTTTAATAATTTGTGATTGAGATATGTATAATTTCTTTT-TTAGAAT 598 consensus_7584#2 TCCTCTTTTTTTTT----ATAATTTGTGATTGAGAGATGTATAATTTCTTTT-TTAGAAT 195 consensus_7584#1 TCCTCTCCTTTTTTTT-AATAATTTGTGATTGAGAGATGTATAATTTCTTTTATTACAAT 200 ****** ****** ***************** **************** *** *** consensus_7584#0 TTGTGATTGATTGCATGGATCTGAGTTGTATAAT-----TGTGATGCATTTGATTTGTGT 653 consensus_7584#2 TTGTGATTCAT------------------------------------------------- 206 consensus_7584#1 TTGTGATTCATTGGATGGATCTGAGATGTGTAATCGATTTGTGATGCATTTAATTTGTGT 260 ******** ** consensus_7584#0 GTAATTTTTTTAAGATTTGTGATCTATTTGATTTGTGTGTAAGTAACTTAGGATTTGTAT 713 consensus_7584#2 ------------------------------------------------------------ consensus_7584#1 GTAATTTTTTTAAAATTTGTGATGTAAAAA------------------------------ 290 consensus_7584#0 TATGATGTGAATGAT 728 consensus_7584#2 --------------- consensus_7584#1 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||